Ggra3760.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3760.t1
Unique NameGgra3760.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length395
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1363265..1364870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3760Ggra3760Gracilaria gracilis GNS1m malegenetig00000850_pilon 1363265..1364870 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3760.t1Ggra3760.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 1363265..1364870 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3760.t1.stop1Ggra3760.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 1363265..1363267 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3760.t1.CDS1Ggra3760.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1363265..1363773 -
Ggra3760.t1.CDS2Ggra3760.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1363893..1363972 -
Ggra3760.t1.CDS3Ggra3760.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1364275..1364870 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3760.t1.exon1Ggra3760.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 1363265..1363773 -
Ggra3760.t1.exon2Ggra3760.t1.exon2Gracilaria gracilis GNS1m maleexontig00000850_pilon 1363893..1363972 -
Ggra3760.t1.exon3Ggra3760.t1.exon3Gracilaria gracilis GNS1m maleexontig00000850_pilon 1364275..1364870 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3760.t1.intron1Ggra3760.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000850_pilon 1363774..1363892 -
Ggra3760.t1.intron2Ggra3760.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000850_pilon 1363973..1364274 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3760.t1.start1Ggra3760.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 1364868..1364870 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3760.t1 ID=Ggra3760.t1|Name=Ggra3760.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=395bp
MTDQTQSLVSGTPPPPAEDLELVSLAPLAKHDLNNIALDGIPTDGCDPQV
LTQIDCTLPVDLDPIATYFAPSETEQQRSAQQTHSNAAKACMGLQIPVNT
KRNNRTALNSLCAFCVAWFEKENGALETTPQPNEDANTALFAKGCCILFG
DDNGGALPHGYSQWTDAQLCRARYNLIEFAVNYRKSDGGDIAPTIMKTES
QFTKVVRNNQIVWLNTGAVGGNNGSYVGRFVSWDGQVFLAINVRATAVHA
FLKRQHLGKNFFSRIVRTVCMKEGVTGMGSKYWPTTHSLRATLSSLLIEA
GHADSAVAKRTGHRDLRSLKSYQHIQGAEGAQQQRDILGLEPESPRKRLR
GNDVQPHESGADSTSFSTHRDGVESNGDCGDIESWRRLCHQSAQ*
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spliced messenger RNA

>Ggra3760.t1 ID=Ggra3760.t1|Name=Ggra3760.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1185bp|location=Sequence derived from alignment at tig00000850_pilon:1363265..1364870- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGATCAAACGCAATCATTGGTATCAGGCACACCTCCGCCGCCTGC
AGAAGATCTAGAACTAGTATCACTCGCGCCCTTGGCTAAACACGATCTCA
ACAACATTGCACTTGATGGCATTCCCACTGACGGCTGCGATCCTCAGGTT
TTGACGCAAATCGACTGCACTCTCCCTGTCGATCTTGATCCTATCGCAAC
CTACTTTGCCCCGTCGGAAACCGAGCAGCAACGCTCTGCGCAACAGACAC
ACTCCAATGCCGCAAAGGCCTGCATGGGACTTCAAATTCCCGTTAATACA
AAGCGCAACAACCGCACCGCTCTAAATTCTCTTTGCGCCTTCTGCGTCGC
ATGGTTCGAAAAGGAAAATGGGGCTCTCGAGACAACACCACAACCAAACG
AAGACGCTAATACCGCACTATTTGCAAAAGGTTGTTGCATTTTGTTTGGG
GACGACAACGGCGGGGCCTTGCCGCATGGGTACAGCCAGTGGACTGATGC
ACAGTTATGCCGAGCAAGGTATAACTTAATTGAGTTCGCTGTCAATTACC
GTAAGAGCGATGGCGGAGACATCGCCCCCACCATTATGAAGACCGAGTCG
CAGTTCACCAAAGTGGTGCGCAATAATCAGATCGTATGGCTCAATACTGG
TGCTGTCGGTGGCAATAATGGCTCTTATGTAGGACGATTTGTCTCCTGGG
ACGGACAGGTTTTTTTAGCGATCAATGTAAGAGCAACAGCAGTACATGCC
TTTCTTAAGCGGCAGCATTTAGGGAAGAACTTCTTTTCAAGGATTGTGAG
AACTGTGTGTATGAAGGAGGGAGTGACAGGAATGGGTTCTAAATACTGGC
CTACAACGCATTCGTTGCGTGCTACGCTGTCCTCGTTACTGATCGAGGCT
GGTCACGCTGATTCTGCCGTCGCTAAGCGCACTGGCCATCGTGATTTGCG
ATCTCTCAAAAGCTACCAACACATTCAGGGGGCGGAGGGCGCACAGCAGC
AACGCGACATATTGGGTTTGGAGCCGGAGTCGCCGCGAAAGCGTCTTCGT
GGCAATGATGTGCAACCGCACGAAAGCGGTGCTGACAGTACTTCTTTTTC
AACCCACAGAGACGGTGTGGAATCGAATGGTGATTGTGGAGATATTGAGT
CCTGGCGAAGACTCTGTCATCAATCGGCACAGTGA
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protein sequence of Ggra3760.t1

>Ggra3760.t1 ID=Ggra3760.t1|Name=Ggra3760.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=395bp
MTDQTQSLVSGTPPPPAEDLELVSLAPLAKHDLNNIALDGIPTDGCDPQV
LTQIDCTLPVDLDPIATYFAPSETEQQRSAQQTHSNAAKACMGLQIPVNT
KRNNRTALNSLCAFCVAWFEKENGALETTPQPNEDANTALFAKGCCILFG
DDNGGALPHGYSQWTDAQLCRARYNLIEFAVNYRKSDGGDIAPTIMKTES
QFTKVVRNNQIVWLNTGAVGGNNGSYVGRFVSWDGQVFLAINVRATAVHA
FLKRQHLGKNFFSRIVRTVCMKEGVTGMGSKYWPTTHSLRATLSSLLIEA
GHADSAVAKRTGHRDLRSLKSYQHIQGAEGAQQQRDILGLEPESPRKRLR
GNDVQPHESGADSTSFSTHRDGVESNGDCGDIESWRRLCHQSAQ*
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mRNA from alignment at tig00000850_pilon:1363265..1364870-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3760.t1 ID=Ggra3760.t1|Name=Ggra3760.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1606bp|location=Sequence derived from alignment at tig00000850_pilon:1363265..1364870- (Gracilaria gracilis GNS1m male)
ATGACCGATCAAACGCAATCATTGGTATCAGGCACACCTCCGCCGCCTGC
AGAAGATCTAGAACTAGTATCACTCGCGCCCTTGGCTAAACACGATCTCA
ACAACATTGCACTTGATGGCATTCCCACTGACGGCTGCGATCCTCAGGTT
TTGACGCAAATCGACTGCACTCTCCCTGTCGATCTTGATCCTATCGCAAC
CTACTTTGCCCCGTCGGAAACCGAGCAGCAACGCTCTGCGCAACAGACAC
ACTCCAATGCCGCAAAGGCCTGCATGGGACTTCAAATTCCCGTTAATACA
AAGCGCAACAACCGCACCGCTCTAAATTCTCTTTGCGCCTTCTGCGTCGC
ATGGTTCGAAAAGGAAAATGGGGCTCTCGAGACAACACCACAACCAAACG
AAGACGCTAATACCGCACTATTTGCAAAAGGTTGTTGCATTTTGTTTGGG
GACGACAACGGCGGGGCCTTGCCGCATGGGTACAGCCAGTGGACTGATGC
ACAGTTATGCCGAGCAAGGTATAACTTAATTGAGTTCGCTGTCAATTACC
GTAAGAGCGATGGCGGAGACATCGCCCCCACCATTATGAAGACCGAGTGT
TGTCAATTCAGCGCGCATTTTTCATGGACTGGGTTACAAGCTTTCATTGT
TCGAAGGACCAGTTTTCGTCTGCCCTAAGAATGGGTTCATGGCGGTATTA
GACAACAAAGCAAGGCAGCTGCAACGGCAGGGCAATCACGTATCGCACCA
TAATGCGCTAACGAAGAAAGACATACTAAAACCCTACAATTCAAGGTCGC
TTTCGAAGGATACACCGTCAGGGTTTCAGGCCAGAATGGTTTTTTAATCT
AGGTATACTCACTGCAATGCGGCCTAGCGCTCTACACGTTTTGACTAGGT
CGCAGTTCACCAAAGTGGTGCGCAATAATCAGATCGTATGGCTCAATACT
GGTGCTGTCGGTGGCAATAATGGCTCTTGTAAGGCGTGGAAAGGGGGCTG
GAAAGCCATAGGACAAGACCCCCCAACGATATGTGTTTGGAATGAGACCT
ATGGTGGATTTCTAAATTTTTTTGAGGACTTGGACACCTATCTACAGATG
TAGGACGATTTGTCTCCTGGGACGGACAGGTTTTTTTAGCGATCAATGTA
AGAGCAACAGCAGTACATGCCTTTCTTAAGCGGCAGCATTTAGGGAAGAA
CTTCTTTTCAAGGATTGTGAGAACTGTGTGTATGAAGGAGGGAGTGACAG
GAATGGGTTCTAAATACTGGCCTACAACGCATTCGTTGCGTGCTACGCTG
TCCTCGTTACTGATCGAGGCTGGTCACGCTGATTCTGCCGTCGCTAAGCG
CACTGGCCATCGTGATTTGCGATCTCTCAAAAGCTACCAACACATTCAGG
GGGCGGAGGGCGCACAGCAGCAACGCGACATATTGGGTTTGGAGCCGGAG
TCGCCGCGAAAGCGTCTTCGTGGCAATGATGTGCAACCGCACGAAAGCGG
TGCTGACAGTACTTCTTTTTCAACCCACAGAGACGGTGTGGAATCGAATG
GTGATTGTGGAGATATTGAGTCCTGGCGAAGACTCTGTCATCAATCGGCA
CAGTGA
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Coding sequence (CDS) from alignment at tig00000850_pilon:1363265..1364870-

>Ggra3760.t1 ID=Ggra3760.t1|Name=Ggra3760.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1185bp|location=Sequence derived from alignment at tig00000850_pilon:1363265..1364870- (Gracilaria gracilis GNS1m male)
ATGACCGATCAAACGCAATCATTGGTATCAGGCACACCTCCGCCGCCTGC
AGAAGATCTAGAACTAGTATCACTCGCGCCCTTGGCTAAACACGATCTCA
ACAACATTGCACTTGATGGCATTCCCACTGACGGCTGCGATCCTCAGGTT
TTGACGCAAATCGACTGCACTCTCCCTGTCGATCTTGATCCTATCGCAAC
CTACTTTGCCCCGTCGGAAACCGAGCAGCAACGCTCTGCGCAACAGACAC
ACTCCAATGCCGCAAAGGCCTGCATGGGACTTCAAATTCCCGTTAATACA
AAGCGCAACAACCGCACCGCTCTAAATTCTCTTTGCGCCTTCTGCGTCGC
ATGGTTCGAAAAGGAAAATGGGGCTCTCGAGACAACACCACAACCAAACG
AAGACGCTAATACCGCACTATTTGCAAAAGGTTGTTGCATTTTGTTTGGG
GACGACAACGGCGGGGCCTTGCCGCATGGGTACAGCCAGTGGACTGATGC
ACAGTTATGCCGAGCAAGGTATAACTTAATTGAGTTCGCTGTCAATTACC
GTAAGAGCGATGGCGGAGACATCGCCCCCACCATTATGAAGACCGAGTCG
CAGTTCACCAAAGTGGTGCGCAATAATCAGATCGTATGGCTCAATACTGG
TGCTGTCGGTGGCAATAATGGCTCTTATGTAGGACGATTTGTCTCCTGGG
ACGGACAGGTTTTTTTAGCGATCAATGTAAGAGCAACAGCAGTACATGCC
TTTCTTAAGCGGCAGCATTTAGGGAAGAACTTCTTTTCAAGGATTGTGAG
AACTGTGTGTATGAAGGAGGGAGTGACAGGAATGGGTTCTAAATACTGGC
CTACAACGCATTCGTTGCGTGCTACGCTGTCCTCGTTACTGATCGAGGCT
GGTCACGCTGATTCTGCCGTCGCTAAGCGCACTGGCCATCGTGATTTGCG
ATCTCTCAAAAGCTACCAACACATTCAGGGGGCGGAGGGCGCACAGCAGC
AACGCGACATATTGGGTTTGGAGCCGGAGTCGCCGCGAAAGCGTCTTCGT
GGCAATGATGTGCAACCGCACGAAAGCGGTGCTGACAGTACTTCTTTTTC
AACCCACAGAGACGGTGTGGAATCGAATGGTGATTGTGGAGATATTGAGT
CCTGGCGAAGACTCTGTCATCAATCGGCACAGTGA
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