Ggra376.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra376.t1
Unique NameGgra376.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length169
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000950_piloncontigtig00000950_pilon:196354..196860 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707296.1
PFAMsPGI
Max annot lvl2759|Eukaryota
KEGG rclassRC00376,RC00563
KEGG koko:K01810
KEGG ReactionR02739,R02740,R03321
KEGG Pathwayko00010,ko00030,ko00500,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00500,map00520,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00001,M00004,M00114
Evalue4.54e-85
EggNOG OGsCOG0166@1|root,KOG2446@2759|Eukaryota
EC5.3.1.9
Descriptionglucose-6-phosphate isomerase activity
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra376Ggra376Gracilaria gracilis GNS1m malegenetig00000950_pilon 196354..196860 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra376.t1.stop1Ggra376.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000950_pilon 196354..196356 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra376.t1.CDS1Ggra376.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000950_pilon 196354..196860 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra376.t1.exon1Ggra376.t1.exon1Gracilaria gracilis GNS1m maleexontig00000950_pilon 196354..196860 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra376.t1.start1Ggra376.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000950_pilon 196858..196860 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra376.t1Ggra376.t1Gracilaria gracilis GNS1m malepolypeptidetig00000950_pilon 196354..196860 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra376.t1 ID=Ggra376.t1|Name=Ggra376.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=169bp
MGQTVPCTFIGFIESQNPTCQDGEPVSNHDELMSNFFAQPDALARGKTGE
ECRAEGRPEWLVPHVTFSGNRPSLSLLLPVLNAYSCGQLLSIFEHRTAVQ
GFIWDINSFDQWGVELGKVLATKVRKQLNQARYHGKDVTGFNASTKRLVE
RYLFGSVGCAFDEIIDYE*
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spliced messenger RNA

>Ggra376.t1 ID=Ggra376.t1|Name=Ggra376.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=507bp|location=Sequence derived from alignment at tig00000950_pilon:196354..196860- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACAGACTGTGCCGTGTACCTTCATCGGCTTCATTGAGTCTCAGAA
TCCAACTTGTCAGGATGGCGAACCAGTCAGCAATCACGATGAACTCATGT
CGAACTTCTTTGCGCAGCCGGATGCGCTAGCGAGAGGAAAGACTGGTGAG
GAATGCCGGGCGGAGGGGCGACCCGAGTGGTTGGTTCCTCATGTTACGTT
CAGTGGAAATCGCCCCTCGCTGTCTCTCTTGCTTCCCGTGCTGAATGCGT
ATAGTTGCGGACAACTGTTGTCCATATTTGAACACCGCACGGCTGTGCAG
GGATTCATATGGGACATCAACAGCTTCGATCAATGGGGAGTTGAGCTCGG
GAAGGTTCTGGCCACAAAGGTTCGCAAGCAGCTTAACCAGGCGAGATACC
ACGGAAAGGATGTCACCGGGTTCAACGCGTCCACGAAGCGTCTTGTTGAA
CGCTACTTGTTTGGCTCAGTCGGGTGTGCGTTTGACGAGATTATCGATTA
CGAGTAA
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protein sequence of Ggra376.t1

>Ggra376.t1 ID=Ggra376.t1|Name=Ggra376.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=169bp
MGQTVPCTFIGFIESQNPTCQDGEPVSNHDELMSNFFAQPDALARGKTGE
ECRAEGRPEWLVPHVTFSGNRPSLSLLLPVLNAYSCGQLLSIFEHRTAVQ
GFIWDINSFDQWGVELGKVLATKVRKQLNQARYHGKDVTGFNASTKRLVE
RYLFGSVGCAFDEIIDYE*
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mRNA from alignment at tig00000950_pilon:196354..196860-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra376.t1 ID=Ggra376.t1|Name=Ggra376.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=507bp|location=Sequence derived from alignment at tig00000950_pilon:196354..196860- (Gracilaria gracilis GNS1m male)
ATGGGACAGACTGTGCCGTGTACCTTCATCGGCTTCATTGAGTCTCAGAA
TCCAACTTGTCAGGATGGCGAACCAGTCAGCAATCACGATGAACTCATGT
CGAACTTCTTTGCGCAGCCGGATGCGCTAGCGAGAGGAAAGACTGGTGAG
GAATGCCGGGCGGAGGGGCGACCCGAGTGGTTGGTTCCTCATGTTACGTT
CAGTGGAAATCGCCCCTCGCTGTCTCTCTTGCTTCCCGTGCTGAATGCGT
ATAGTTGCGGACAACTGTTGTCCATATTTGAACACCGCACGGCTGTGCAG
GGATTCATATGGGACATCAACAGCTTCGATCAATGGGGAGTTGAGCTCGG
GAAGGTTCTGGCCACAAAGGTTCGCAAGCAGCTTAACCAGGCGAGATACC
ACGGAAAGGATGTCACCGGGTTCAACGCGTCCACGAAGCGTCTTGTTGAA
CGCTACTTGTTTGGCTCAGTCGGGTGTGCGTTTGACGAGATTATCGATTA
CGAGTAA
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Coding sequence (CDS) from alignment at tig00000950_pilon:196354..196860-

>Ggra376.t1 ID=Ggra376.t1|Name=Ggra376.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=507bp|location=Sequence derived from alignment at tig00000950_pilon:196354..196860- (Gracilaria gracilis GNS1m male)
ATGGGACAGACTGTGCCGTGTACCTTCATCGGCTTCATTGAGTCTCAGAA
TCCAACTTGTCAGGATGGCGAACCAGTCAGCAATCACGATGAACTCATGT
CGAACTTCTTTGCGCAGCCGGATGCGCTAGCGAGAGGAAAGACTGGTGAG
GAATGCCGGGCGGAGGGGCGACCCGAGTGGTTGGTTCCTCATGTTACGTT
CAGTGGAAATCGCCCCTCGCTGTCTCTCTTGCTTCCCGTGCTGAATGCGT
ATAGTTGCGGACAACTGTTGTCCATATTTGAACACCGCACGGCTGTGCAG
GGATTCATATGGGACATCAACAGCTTCGATCAATGGGGAGTTGAGCTCGG
GAAGGTTCTGGCCACAAAGGTTCGCAAGCAGCTTAACCAGGCGAGATACC
ACGGAAAGGATGTCACCGGGTTCAACGCGTCCACGAAGCGTCTTGTTGAA
CGCTACTTGTTTGGCTCAGTCGGGTGTGCGTTTGACGAGATTATCGATTA
CGAGTAA
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