Ggra375.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra375.t1
Unique NameGgra375.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length549
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000950_piloncontigtig00000950_pilon:194175..195821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5786.XP_003294930.1
PFAMsATG16,WD40
Max annot lvl554915|Amoebozoa
KEGG koko:K17890
KEGG Pathwayko04136,ko04138,ko04140,ko04621,map04136,map04138,map04140,map04621
GOsGO:0000045,GO:0000421,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005776,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006897,GO:0006907,GO:0006909,GO:0006914,GO:0006996,GO:0007033,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0016020,GO:0016043,GO:0016192,GO:0016236,GO:0016740,GO:0019538,GO:0019776,GO:0019941,GO:0022607,GO:0030163,GO:0030587,GO:0031090,GO:0031154,GO:0032502,GO:0032991,GO:0034274,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048856,GO:0051179,GO:0051234,GO:0051603,GO:0051703,GO:0051704,GO:0061919,GO:0070925,GO:0071704,GO:0071840,GO:0090382,GO:0090702,GO:0098588,GO:0098657,GO:0098805,GO:0099120,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905037,GO:1990234
Evalue1.23e-14
EggNOG OGsKOG0288@1|root,KOG0288@2759|Eukaryota,3X8KV@554915|Amoebozoa
DescriptionWD domain, G-beta repeat
COG categoryS
BRITEko00000,ko00001,ko03029,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra375Ggra375Gracilaria gracilis GNS1m malegenetig00000950_pilon 194175..195821 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra375.t1.start1Ggra375.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000950_pilon 194175..194177 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra375.t1.CDS1Ggra375.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000950_pilon 194175..195821 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra375.t1.exon1Ggra375.t1.exon1Gracilaria gracilis GNS1m maleexontig00000950_pilon 194175..195821 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra375.t1.stop1Ggra375.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000950_pilon 195819..195821 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra375.t1Ggra375.t1Gracilaria gracilis GNS1m malepolypeptidetig00000950_pilon 194175..195821 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra375.t1 ID=Ggra375.t1|Name=Ggra375.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=549bp
MAAAEALVASLRDMITEQTFAQGPCLDDTPTGPAPSAENDLDLILSRISD
GTDLKKPPDFSELQSNTVSVENSGVDPEVISIDMNDLQPLSQATNEIEDT
AAVTPSDIPPNDQLMTNRPASFQEATTNAAVTSQQTFAATPSRRQQRHSM
PVVPSDSVSPAQQSHTTSNLLLSAFGQATNAPHQASTIRTSAVQSDDDLP
PEVVPLGKGDGAIFRVHSPQPIPSTGCSRACSAHSGEIYALASTLDGNWI
ASGGDDRVVNIYNTSGTSCASISESPRSITALQFNQSVEQSNAEFNVIYA
GSSDGSIRSLKKHPRRRGKWTLGAVFPVHTQAVRRMICTNSNQVLSCSTD
RTIKVSDVENAKRPFAAAASSAVLDIDMFESWNGLIVSGHKDGCVRMWSL
KDQDTCIGGTKLHTKGIISVACLADGHGVVSLGRDNVIRLSDTRMNTVGA
VREMDGIVDTVSDWHRLSVNGQHVSCGMGRQGDVGFWNVESGKLVRRITS
QGSASDADVIDMVTRKLRNPGSVVVPHWTPLGQFVCAHRMRQVSFWGA*
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spliced messenger RNA

>Ggra375.t1 ID=Ggra375.t1|Name=Ggra375.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1647bp|location=Sequence derived from alignment at tig00000950_pilon:194175..195821+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atggccgctGCCGAAGCTCTTGTAGCATCTTTGCGTGACATGATCACCGA
GCAGACTTTCGCACAGGGCCCTTGCTTGGACGATACACCGACGGGGCCAG
CACCCTCTGCAGAAAATGACCTGGACTTGATACTTAGTCGCATATCAGAT
GGAACCGATCTGAAGAAGCCGCCAGACTTCTCCGAGCTACAATCGAATAC
CGTCTCGGTTGAGAACTCTGGAGTCGATCCGGAGGTGATCTCAATAGACA
TGAATGACCTGCAACCACTCTCACAAGCAACTAACGAAATTGAAGATACG
GCCGCAGTGACGCCTTCTGATATTCCTCCCAATGACCAGTTGATGACAAA
CAGGCCGGCTTCTTTCCAGGAGGCAACAACCAATGCAGCAGTGACCTCTC
AGCAGACTTTCGCTGCCACACCTTCGCGACGCCAGCAACGGCATTCGATG
CCTGTTGTCCCTTCAGACTCGGTTTCTCCCGCTCAGCAGTCGCACACAAC
ATCTAATCTGCTACTTTCCGCGTTTGGCCAGGCGACCAATGCTCCTCATC
AAGCTTCTACCATCCGCACTTCTGCTGTTCAATCAGATGACGACCTTCCC
CCCGAAGTTGTCCCATTAGGAAAAGGAGATGGCGCGATATTCAGAGTTCA
TAGCCCCCAGCCTATACCGAGCACGGGATGTTCTCGGGCTTGTAGCGCTC
ACAGTGGGGAAATCTATGCTCTTGCATCAACTCTCGATGGAAACTGGATT
GCGTCTGGGGGCGACGACAGGGTTGTGAACATATACAACACTTCGGGAAC
GTCTTGCGCCTCCATTTCCGAGAGTCCACGCTCGATTACAGCTCTGCAAT
TCAACCAATCGGTGGAGCAAAGCAATGCGGAATTCAACGTGATCTACGCG
GGCAGCAGTGATGGTTCTATCCGCAGTTTGAAGAAGCATCCAAGGCGCCG
AGGGAAGTGGACTCTAGGCGCTGTCTTTCCTGTGCACACCCAAGCCGTAA
GACGCATGATTTGTACAAACTCAAACCAGGTACTCTCATGTTCGACAGAT
CGCACAATCAAGGTTTCGGATGTTGAAAACGCGAAAAGACCATTTGCAGC
TGCTGCCTCGTCTGCAGTGCTCGATATTGACATGTTCGAGTCATGGAACG
GACTCATAGTATCAGGACACAAAGACGGATGTGTACGTATGTGGTCCCTA
AAAGACCAAGACACTTGCATTGGAGGAACAAAACTGCATACTAAGGGCAT
TATTTCCGTGGCCTGTCTCGCAGACGGACACGGAGTTGTCTCACTGGGGA
GGGATAATGTCATTCGTTTAAGTGATACCAGAATGAACACTGTTGGTGCA
GTTCGGGAGATGGATGGAATAGTCGACACCGTTTCAGATTGGCATCGCTT
GTCAGTGAATGGCCAACATGTTTCATGTGGCATGGGGCGCCAAGGAGATG
TAGGTTTCTGGAATGTCGAATCTGGAAAGCTCGTGCGCCGTATCACATCT
CAAGGCTCAGCATCAGATGCCGATGTCATCGATATGGTAACGCGAAAGCT
TCGTAATCCTGGATCAGTTGTGGTTCCGCATTGGACACCCTTGGGGCAGT
TTGTTTGCGCTCATCGCATGCGGCAGGTTTCATTCTGGGGTGCCTAG
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protein sequence of Ggra375.t1

>Ggra375.t1 ID=Ggra375.t1|Name=Ggra375.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=549bp
MAAAEALVASLRDMITEQTFAQGPCLDDTPTGPAPSAENDLDLILSRISD
GTDLKKPPDFSELQSNTVSVENSGVDPEVISIDMNDLQPLSQATNEIEDT
AAVTPSDIPPNDQLMTNRPASFQEATTNAAVTSQQTFAATPSRRQQRHSM
PVVPSDSVSPAQQSHTTSNLLLSAFGQATNAPHQASTIRTSAVQSDDDLP
PEVVPLGKGDGAIFRVHSPQPIPSTGCSRACSAHSGEIYALASTLDGNWI
ASGGDDRVVNIYNTSGTSCASISESPRSITALQFNQSVEQSNAEFNVIYA
GSSDGSIRSLKKHPRRRGKWTLGAVFPVHTQAVRRMICTNSNQVLSCSTD
RTIKVSDVENAKRPFAAAASSAVLDIDMFESWNGLIVSGHKDGCVRMWSL
KDQDTCIGGTKLHTKGIISVACLADGHGVVSLGRDNVIRLSDTRMNTVGA
VREMDGIVDTVSDWHRLSVNGQHVSCGMGRQGDVGFWNVESGKLVRRITS
QGSASDADVIDMVTRKLRNPGSVVVPHWTPLGQFVCAHRMRQVSFWGA*
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mRNA from alignment at tig00000950_pilon:194175..195821+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra375.t1 ID=Ggra375.t1|Name=Ggra375.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1647bp|location=Sequence derived from alignment at tig00000950_pilon:194175..195821+ (Gracilaria gracilis GNS1m male)
atggccgctGCCGAAGCTCTTGTAGCATCTTTGCGTGACATGATCACCGA
GCAGACTTTCGCACAGGGCCCTTGCTTGGACGATACACCGACGGGGCCAG
CACCCTCTGCAGAAAATGACCTGGACTTGATACTTAGTCGCATATCAGAT
GGAACCGATCTGAAGAAGCCGCCAGACTTCTCCGAGCTACAATCGAATAC
CGTCTCGGTTGAGAACTCTGGAGTCGATCCGGAGGTGATCTCAATAGACA
TGAATGACCTGCAACCACTCTCACAAGCAACTAACGAAATTGAAGATACG
GCCGCAGTGACGCCTTCTGATATTCCTCCCAATGACCAGTTGATGACAAA
CAGGCCGGCTTCTTTCCAGGAGGCAACAACCAATGCAGCAGTGACCTCTC
AGCAGACTTTCGCTGCCACACCTTCGCGACGCCAGCAACGGCATTCGATG
CCTGTTGTCCCTTCAGACTCGGTTTCTCCCGCTCAGCAGTCGCACACAAC
ATCTAATCTGCTACTTTCCGCGTTTGGCCAGGCGACCAATGCTCCTCATC
AAGCTTCTACCATCCGCACTTCTGCTGTTCAATCAGATGACGACCTTCCC
CCCGAAGTTGTCCCATTAGGAAAAGGAGATGGCGCGATATTCAGAGTTCA
TAGCCCCCAGCCTATACCGAGCACGGGATGTTCTCGGGCTTGTAGCGCTC
ACAGTGGGGAAATCTATGCTCTTGCATCAACTCTCGATGGAAACTGGATT
GCGTCTGGGGGCGACGACAGGGTTGTGAACATATACAACACTTCGGGAAC
GTCTTGCGCCTCCATTTCCGAGAGTCCACGCTCGATTACAGCTCTGCAAT
TCAACCAATCGGTGGAGCAAAGCAATGCGGAATTCAACGTGATCTACGCG
GGCAGCAGTGATGGTTCTATCCGCAGTTTGAAGAAGCATCCAAGGCGCCG
AGGGAAGTGGACTCTAGGCGCTGTCTTTCCTGTGCACACCCAAGCCGTAA
GACGCATGATTTGTACAAACTCAAACCAGGTACTCTCATGTTCGACAGAT
CGCACAATCAAGGTTTCGGATGTTGAAAACGCGAAAAGACCATTTGCAGC
TGCTGCCTCGTCTGCAGTGCTCGATATTGACATGTTCGAGTCATGGAACG
GACTCATAGTATCAGGACACAAAGACGGATGTGTACGTATGTGGTCCCTA
AAAGACCAAGACACTTGCATTGGAGGAACAAAACTGCATACTAAGGGCAT
TATTTCCGTGGCCTGTCTCGCAGACGGACACGGAGTTGTCTCACTGGGGA
GGGATAATGTCATTCGTTTAAGTGATACCAGAATGAACACTGTTGGTGCA
GTTCGGGAGATGGATGGAATAGTCGACACCGTTTCAGATTGGCATCGCTT
GTCAGTGAATGGCCAACATGTTTCATGTGGCATGGGGCGCCAAGGAGATG
TAGGTTTCTGGAATGTCGAATCTGGAAAGCTCGTGCGCCGTATCACATCT
CAAGGCTCAGCATCAGATGCCGATGTCATCGATATGGTAACGCGAAAGCT
TCGTAATCCTGGATCAGTTGTGGTTCCGCATTGGACACCCTTGGGGCAGT
TTGTTTGCGCTCATCGCATGCGGCAGGTTTCATTCTGGGGTGCCTAG
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Coding sequence (CDS) from alignment at tig00000950_pilon:194175..195821+

>Ggra375.t1 ID=Ggra375.t1|Name=Ggra375.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1647bp|location=Sequence derived from alignment at tig00000950_pilon:194175..195821+ (Gracilaria gracilis GNS1m male)
atggccgctGCCGAAGCTCTTGTAGCATCTTTGCGTGACATGATCACCGA
GCAGACTTTCGCACAGGGCCCTTGCTTGGACGATACACCGACGGGGCCAG
CACCCTCTGCAGAAAATGACCTGGACTTGATACTTAGTCGCATATCAGAT
GGAACCGATCTGAAGAAGCCGCCAGACTTCTCCGAGCTACAATCGAATAC
CGTCTCGGTTGAGAACTCTGGAGTCGATCCGGAGGTGATCTCAATAGACA
TGAATGACCTGCAACCACTCTCACAAGCAACTAACGAAATTGAAGATACG
GCCGCAGTGACGCCTTCTGATATTCCTCCCAATGACCAGTTGATGACAAA
CAGGCCGGCTTCTTTCCAGGAGGCAACAACCAATGCAGCAGTGACCTCTC
AGCAGACTTTCGCTGCCACACCTTCGCGACGCCAGCAACGGCATTCGATG
CCTGTTGTCCCTTCAGACTCGGTTTCTCCCGCTCAGCAGTCGCACACAAC
ATCTAATCTGCTACTTTCCGCGTTTGGCCAGGCGACCAATGCTCCTCATC
AAGCTTCTACCATCCGCACTTCTGCTGTTCAATCAGATGACGACCTTCCC
CCCGAAGTTGTCCCATTAGGAAAAGGAGATGGCGCGATATTCAGAGTTCA
TAGCCCCCAGCCTATACCGAGCACGGGATGTTCTCGGGCTTGTAGCGCTC
ACAGTGGGGAAATCTATGCTCTTGCATCAACTCTCGATGGAAACTGGATT
GCGTCTGGGGGCGACGACAGGGTTGTGAACATATACAACACTTCGGGAAC
GTCTTGCGCCTCCATTTCCGAGAGTCCACGCTCGATTACAGCTCTGCAAT
TCAACCAATCGGTGGAGCAAAGCAATGCGGAATTCAACGTGATCTACGCG
GGCAGCAGTGATGGTTCTATCCGCAGTTTGAAGAAGCATCCAAGGCGCCG
AGGGAAGTGGACTCTAGGCGCTGTCTTTCCTGTGCACACCCAAGCCGTAA
GACGCATGATTTGTACAAACTCAAACCAGGTACTCTCATGTTCGACAGAT
CGCACAATCAAGGTTTCGGATGTTGAAAACGCGAAAAGACCATTTGCAGC
TGCTGCCTCGTCTGCAGTGCTCGATATTGACATGTTCGAGTCATGGAACG
GACTCATAGTATCAGGACACAAAGACGGATGTGTACGTATGTGGTCCCTA
AAAGACCAAGACACTTGCATTGGAGGAACAAAACTGCATACTAAGGGCAT
TATTTCCGTGGCCTGTCTCGCAGACGGACACGGAGTTGTCTCACTGGGGA
GGGATAATGTCATTCGTTTAAGTGATACCAGAATGAACACTGTTGGTGCA
GTTCGGGAGATGGATGGAATAGTCGACACCGTTTCAGATTGGCATCGCTT
GTCAGTGAATGGCCAACATGTTTCATGTGGCATGGGGCGCCAAGGAGATG
TAGGTTTCTGGAATGTCGAATCTGGAAAGCTCGTGCGCCGTATCACATCT
CAAGGCTCAGCATCAGATGCCGATGTCATCGATATGGTAACGCGAAAGCT
TCGTAATCCTGGATCAGTTGTGGTTCCGCATTGGACACCCTTGGGGCAGT
TTGTTTGCGCTCATCGCATGCGGCAGGTTTCATTCTGGGGTGCCTAG
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