Ggra3748.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3748.t1
Unique NameGgra3748.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length248
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1297763..1298506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr48253
PFAMsBACK,BTB,Kelch_1,Kelch_4,Kelch_6
Max annot lvl2759|Eukaryota
KEGG koko:K10442,ko:K20285,ko:K21912
Evalue1.86e-25
EggNOG OGsKOG4441@1|root,KOG4441@2759|Eukaryota
Descriptionprotein ubiquitination
COG categoryKLT
BRITEko00000,ko04121,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3748Ggra3748Gracilaria gracilis GNS1m malegenetig00000850_pilon 1297763..1298506 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3748.t1.stop1Ggra3748.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 1297763..1297765 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3748.t1.CDS1Ggra3748.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1297763..1298506 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3748.t1.exon1Ggra3748.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 1297763..1298506 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3748.t1.start1Ggra3748.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 1298504..1298506 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3748.t1Ggra3748.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 1297763..1298506 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3748.t1 ID=Ggra3748.t1|Name=Ggra3748.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=248bp
MRYLKQITLFTVAALWLVIGAAGNQNPCHADKTLQGVNVTCGVVAIPPGL
CSACRLKPIKAGGHFEDCTSIYDVRAASCSAKLEEYVSLNKHCDPVRAEQ
VPEMMTSEKARQGIDYFMYSICEQCCDCIPRGTHISQYGFRKSIDKLFNV
GRGNCPAHAVYDVCKVWPKVRAVIRPGQSRKIRAAMVCPHLKTWLRNPDN
ENWLYRNQVKYHAAVGKFLNSFVNVTECGQRSSWEACVRLETMQRRL*
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spliced messenger RNA

>Ggra3748.t1 ID=Ggra3748.t1|Name=Ggra3748.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=744bp|location=Sequence derived from alignment at tig00000850_pilon:1297763..1298506- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGATATCTCAAGCAGATTACGTTGTTCACAGTTGCGGCTCTTTGGCT
GGTGATAGGTGCAGCTGGAAACCAAAATCCATGCCATGCGGACAAGACGT
TACAGGGTGTGAACGTGACGTGCGGGGTTGTGGCCATTCCACCAGGTCTG
TGTTCGGCATGCAGGCTGAAGCCAATTAAGGCGGGCGGTCATTTTGAGGA
CTGCACGTCGATTTACGACGTTCGCGCCGCCAGTTGCAGCGCAAAGCTTG
AAGAATATGTAAGCTTGAACAAGCACTGTGACCCGGTTCGCGCAGAGCAG
GTGCCCGAAATGATGACGTCTGAAAAGGCGAGGCAGGGCATTGACTACTT
TATGTACTCCATCTGCGAGCAATGTTGTGATTGTATCCCAAGAGGGACGC
ATATCTCGCAGTACGGATTTCGCAAGTCAATTGATAAGCTGTTCAACGTA
GGACGCGGCAACTGCCCAGCGCATGCTGTGTACGACGTGTGCAAGGTATG
GCCAAAGGTTCGGGCGGTGATTCGACCAGGACAATCTAGAAAGATCAGGG
CAGCCATGGTGTGCCCGCATCTGAAAACATGGCTGCGAAACCCAGACAAC
GAAAACTGGCTGTACAGGAACCAGGTGAAGTACCACGCAGCGGTAGGAAA
GTTCCTCAACTCGTTTGTGAACGTGACGGAGTGCGGGCAGCGCAGCAGCT
GGGAAGCTTGCGTGAGACTGGAGACGATGCAGCGCCGGTTGTGA
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protein sequence of Ggra3748.t1

>Ggra3748.t1 ID=Ggra3748.t1|Name=Ggra3748.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=248bp
MRYLKQITLFTVAALWLVIGAAGNQNPCHADKTLQGVNVTCGVVAIPPGL
CSACRLKPIKAGGHFEDCTSIYDVRAASCSAKLEEYVSLNKHCDPVRAEQ
VPEMMTSEKARQGIDYFMYSICEQCCDCIPRGTHISQYGFRKSIDKLFNV
GRGNCPAHAVYDVCKVWPKVRAVIRPGQSRKIRAAMVCPHLKTWLRNPDN
ENWLYRNQVKYHAAVGKFLNSFVNVTECGQRSSWEACVRLETMQRRL*
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mRNA from alignment at tig00000850_pilon:1297763..1298506-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3748.t1 ID=Ggra3748.t1|Name=Ggra3748.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=744bp|location=Sequence derived from alignment at tig00000850_pilon:1297763..1298506- (Gracilaria gracilis GNS1m male)
ATGAGATATCTCAAGCAGATTACGTTGTTCACAGTTGCGGCTCTTTGGCT
GGTGATAGGTGCAGCTGGAAACCAAAATCCATGCCATGCGGACAAGACGT
TACAGGGTGTGAACGTGACGTGCGGGGTTGTGGCCATTCCACCAGGTCTG
TGTTCGGCATGCAGGCTGAAGCCAATTAAGGCGGGCGGTCATTTTGAGGA
CTGCACGTCGATTTACGACGTTCGCGCCGCCAGTTGCAGCGCAAAGCTTG
AAGAATATGTAAGCTTGAACAAGCACTGTGACCCGGTTCGCGCAGAGCAG
GTGCCCGAAATGATGACGTCTGAAAAGGCGAGGCAGGGCATTGACTACTT
TATGTACTCCATCTGCGAGCAATGTTGTGATTGTATCCCAAGAGGGACGC
ATATCTCGCAGTACGGATTTCGCAAGTCAATTGATAAGCTGTTCAACGTA
GGACGCGGCAACTGCCCAGCGCATGCTGTGTACGACGTGTGCAAGGTATG
GCCAAAGGTTCGGGCGGTGATTCGACCAGGACAATCTAGAAAGATCAGGG
CAGCCATGGTGTGCCCGCATCTGAAAACATGGCTGCGAAACCCAGACAAC
GAAAACTGGCTGTACAGGAACCAGGTGAAGTACCACGCAGCGGTAGGAAA
GTTCCTCAACTCGTTTGTGAACGTGACGGAGTGCGGGCAGCGCAGCAGCT
GGGAAGCTTGCGTGAGACTGGAGACGATGCAGCGCCGGTTGTGA
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Coding sequence (CDS) from alignment at tig00000850_pilon:1297763..1298506-

>Ggra3748.t1 ID=Ggra3748.t1|Name=Ggra3748.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=744bp|location=Sequence derived from alignment at tig00000850_pilon:1297763..1298506- (Gracilaria gracilis GNS1m male)
ATGAGATATCTCAAGCAGATTACGTTGTTCACAGTTGCGGCTCTTTGGCT
GGTGATAGGTGCAGCTGGAAACCAAAATCCATGCCATGCGGACAAGACGT
TACAGGGTGTGAACGTGACGTGCGGGGTTGTGGCCATTCCACCAGGTCTG
TGTTCGGCATGCAGGCTGAAGCCAATTAAGGCGGGCGGTCATTTTGAGGA
CTGCACGTCGATTTACGACGTTCGCGCCGCCAGTTGCAGCGCAAAGCTTG
AAGAATATGTAAGCTTGAACAAGCACTGTGACCCGGTTCGCGCAGAGCAG
GTGCCCGAAATGATGACGTCTGAAAAGGCGAGGCAGGGCATTGACTACTT
TATGTACTCCATCTGCGAGCAATGTTGTGATTGTATCCCAAGAGGGACGC
ATATCTCGCAGTACGGATTTCGCAAGTCAATTGATAAGCTGTTCAACGTA
GGACGCGGCAACTGCCCAGCGCATGCTGTGTACGACGTGTGCAAGGTATG
GCCAAAGGTTCGGGCGGTGATTCGACCAGGACAATCTAGAAAGATCAGGG
CAGCCATGGTGTGCCCGCATCTGAAAACATGGCTGCGAAACCCAGACAAC
GAAAACTGGCTGTACAGGAACCAGGTGAAGTACCACGCAGCGGTAGGAAA
GTTCCTCAACTCGTTTGTGAACGTGACGGAGTGCGGGCAGCGCAGCAGCT
GGGAAGCTTGCGTGAGACTGGAGACGATGCAGCGCCGGTTGTGA
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