Ggra3745.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3745.t1
Unique Name	Ggra3745.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	286

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000850_pilon	contig	tig00000850_pilon:1293074..1293931 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4787.PITG_00461T0
PFAMs	Mito_carr
Max annot lvl	4776\|Peronosporales
Evalue	4.98e-109
EggNOG OGs	KOG0756@1\|root,KOG0756@2759\|Eukaryota,3Q780@4776\|Peronosporales
Description	Mitochondrial carrier protein
COG category	C

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3745	Ggra3745	Gracilaria gracilis GNS1m male	gene	tig00000850_pilon 1293074..1293931 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3745.t1.start1	Ggra3745.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000850_pilon 1293074..1293076 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3745.t1.CDS1	Ggra3745.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000850_pilon 1293074..1293931 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3745.t1.exon1	Ggra3745.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000850_pilon 1293074..1293931 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3745.t1.stop1	Ggra3745.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000850_pilon 1293929..1293931 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3745.t1	Ggra3745.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000850_pilon 1293074..1293931 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000850_pilon:1293074..1293931+
coding sequence from alignment at tig00000850_pilon:1293074..1293931+

mRNA sequence

>Ggra3745.t1 ID=Ggra3745.t1|Name=Ggra3745.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=286bp
MAPGGRKSATDVRNGALLQMAEAATLGLPFEVWKTRMGRFRNESTIQAFK
NVYSSAGGGMNGVGAFWRGFGPKMIESATKGAVLMVSKETLREAGTSAGL
SPFAAAVMGGAGGGVCQVVVMGPCTYLVTAAVTGGGSTSGVELAKQTYAK
SGIRGFYPGGSAIAFRQATNWASRQGLTEFVRIRMRRFKHGDDTAKLSKG
EEGLCGVIGGTLSSWNHPFEVARIEMQARANAGQPRLSLVQVLGMVVKEQ
GPLGLFQGVIPRIGLNIWQTLFMVSLVHVIGDIKK*

spliced messenger RNA

>Ggra3745.t1 ID=Ggra3745.t1|Name=Ggra3745.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=858bp|location=Sequence derived from alignment at tig00000850_pilon:1293074..1293931+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACCGGGCGGCAGGAAATCTGCTACAGACGTTCGCAATGGAGCATT
ACTGCAGATGGCAGAAGCCGCCACATTAGGACTGCCCTTTGAGGTCTGGA
AAACGCGCATGGGGCGCTTTCGCAATGAATCTACCATCCAAGCGTTCAAG
AATGTGTACTCTTCCGCCGGTGGGGGGATGAATGGAGTCGGCGCATTTTG
GCGGGGATTCGGTCCAAAGATGATCGAAAGCGCTACAAAAGGTGCCGTGC
TGATGGTATCAAAGGAAACTCTGAGGGAAGCTGGAACATCTGCTGGTCTT
TCACCGTTTGCCGCGGCTGTGATGGGTGGTGCCGGTGGAGGCGTCTGTCA
AGTGGTCGTCATGGGTCCGTGTACGTACCTTGTTACGGCAGCTGTGACCG
GCGGGGGATCAACATCGGGCGTGGAATTGGCGAAGCAGACATATGCAAAG
AGCGGAATCCGGGGTTTCTATCCTGGTGGCAGTGCGATTGCTTTCAGGCA
GGCCACAAACTGGGCATCCCGACAGGGTTTGACAGAATTTGTGCGTATTC
GCATGCGTCGTTTTAAGCACGGTGACGATACCGCAAAGTTGTCAAAAGGA
GAGGAGGGATTATGCGGGGTGATTGGCGGGACGTTATCAAGCTGGAATCA
TCCATTTGAAGTTGCGCGTATTGAGATGCAAGCCAGGGCGAACGCAGGAC
AACCGCGGTTGAGTTTGGTGCAAGTACTGGGGATGGTTGTGAAGGAGCAG
GGACCATTAGGTCTGTTTCAGGGAGTAATACCGCGCATAGGACTCAATAT
TTGGCAGACTTTGTTTATGGTGAGCCTAGTTCATGTAATAGGAGACATTA
AGAAGTAA

protein sequence of Ggra3745.t1

>Ggra3745.t1 ID=Ggra3745.t1|Name=Ggra3745.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=286bp
MAPGGRKSATDVRNGALLQMAEAATLGLPFEVWKTRMGRFRNESTIQAFK
NVYSSAGGGMNGVGAFWRGFGPKMIESATKGAVLMVSKETLREAGTSAGL
SPFAAAVMGGAGGGVCQVVVMGPCTYLVTAAVTGGGSTSGVELAKQTYAK
SGIRGFYPGGSAIAFRQATNWASRQGLTEFVRIRMRRFKHGDDTAKLSKG
EEGLCGVIGGTLSSWNHPFEVARIEMQARANAGQPRLSLVQVLGMVVKEQ
GPLGLFQGVIPRIGLNIWQTLFMVSLVHVIGDIKK*

mRNA from alignment at tig00000850_pilon:1293074..1293931+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3745.t1 ID=Ggra3745.t1|Name=Ggra3745.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=858bp|location=Sequence derived from alignment at tig00000850_pilon:1293074..1293931+ (Gracilaria gracilis GNS1m male)
ATGGCACCGGGCGGCAGGAAATCTGCTACAGACGTTCGCAATGGAGCATT
ACTGCAGATGGCAGAAGCCGCCACATTAGGACTGCCCTTTGAGGTCTGGA
AAACGCGCATGGGGCGCTTTCGCAATGAATCTACCATCCAAGCGTTCAAG
AATGTGTACTCTTCCGCCGGTGGGGGGATGAATGGAGTCGGCGCATTTTG
GCGGGGATTCGGTCCAAAGATGATCGAAAGCGCTACAAAAGGTGCCGTGC
TGATGGTATCAAAGGAAACTCTGAGGGAAGCTGGAACATCTGCTGGTCTT
TCACCGTTTGCCGCGGCTGTGATGGGTGGTGCCGGTGGAGGCGTCTGTCA
AGTGGTCGTCATGGGTCCGTGTACGTACCTTGTTACGGCAGCTGTGACCG
GCGGGGGATCAACATCGGGCGTGGAATTGGCGAAGCAGACATATGCAAAG
AGCGGAATCCGGGGTTTCTATCCTGGTGGCAGTGCGATTGCTTTCAGGCA
GGCCACAAACTGGGCATCCCGACAGGGTTTGACAGAATTTGTGCGTATTC
GCATGCGTCGTTTTAAGCACGGTGACGATACCGCAAAGTTGTCAAAAGGA
GAGGAGGGATTATGCGGGGTGATTGGCGGGACGTTATCAAGCTGGAATCA
TCCATTTGAAGTTGCGCGTATTGAGATGCAAGCCAGGGCGAACGCAGGAC
AACCGCGGTTGAGTTTGGTGCAAGTACTGGGGATGGTTGTGAAGGAGCAG
GGACCATTAGGTCTGTTTCAGGGAGTAATACCGCGCATAGGACTCAATAT
TTGGCAGACTTTGTTTATGGTGAGCCTAGTTCATGTAATAGGAGACATTA
AGAAGTAA

Coding sequence (CDS) from alignment at tig00000850_pilon:1293074..1293931+

>Ggra3745.t1 ID=Ggra3745.t1|Name=Ggra3745.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=858bp|location=Sequence derived from alignment at tig00000850_pilon:1293074..1293931+ (Gracilaria gracilis GNS1m male)
ATGGCACCGGGCGGCAGGAAATCTGCTACAGACGTTCGCAATGGAGCATT
ACTGCAGATGGCAGAAGCCGCCACATTAGGACTGCCCTTTGAGGTCTGGA
AAACGCGCATGGGGCGCTTTCGCAATGAATCTACCATCCAAGCGTTCAAG
AATGTGTACTCTTCCGCCGGTGGGGGGATGAATGGAGTCGGCGCATTTTG
GCGGGGATTCGGTCCAAAGATGATCGAAAGCGCTACAAAAGGTGCCGTGC
TGATGGTATCAAAGGAAACTCTGAGGGAAGCTGGAACATCTGCTGGTCTT
TCACCGTTTGCCGCGGCTGTGATGGGTGGTGCCGGTGGAGGCGTCTGTCA
AGTGGTCGTCATGGGTCCGTGTACGTACCTTGTTACGGCAGCTGTGACCG
GCGGGGGATCAACATCGGGCGTGGAATTGGCGAAGCAGACATATGCAAAG
AGCGGAATCCGGGGTTTCTATCCTGGTGGCAGTGCGATTGCTTTCAGGCA
GGCCACAAACTGGGCATCCCGACAGGGTTTGACAGAATTTGTGCGTATTC
GCATGCGTCGTTTTAAGCACGGTGACGATACCGCAAAGTTGTCAAAAGGA
GAGGAGGGATTATGCGGGGTGATTGGCGGGACGTTATCAAGCTGGAATCA
TCCATTTGAAGTTGCGCGTATTGAGATGCAAGCCAGGGCGAACGCAGGAC
AACCGCGGTTGAGTTTGGTGCAAGTACTGGGGATGGTTGTGAAGGAGCAG
GGACCATTAGGTCTGTTTCAGGGAGTAATACCGCGCATAGGACTCAATAT
TTGGCAGACTTTGTTTATGGTGAGCCTAGTTCATGTAATAGGAGACATTA
AGAAGTAA