Ggra3735.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3735.t1
Unique NameGgra3735.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length218
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1259517..1260170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3735Ggra3735Gracilaria gracilis GNS1m malegenetig00000850_pilon 1259517..1260170 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3735.t1.start1Ggra3735.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 1259517..1259519 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3735.t1.CDS1Ggra3735.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1259517..1260170 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3735.t1.exon1Ggra3735.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 1259517..1260170 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3735.t1.stop1Ggra3735.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 1260168..1260170 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3735.t1Ggra3735.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 1259517..1260170 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3735.t1 ID=Ggra3735.t1|Name=Ggra3735.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=218bp
MIRNPRLVTLLLLVCALACLDTNVNASAPDQHLPPVRTEVTFQEDKQQKS
DDPNKAWEEWDETDQSRKNPFPRRQRKIELGMDINTIMGMAMKQPKVVTA
VLTPHFGSDHKIGQMVTQKFRNQLAAAGIGCRLWFVPHGRQVVANCDTIR
DGHMAKDYMISQHEIMRTVIDNVPFTPKPTPADDDDDDDDDDDDDDDHAA
AHRLTAAATNMEEKSEL*
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spliced messenger RNA

>Ggra3735.t1 ID=Ggra3735.t1|Name=Ggra3735.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=654bp|location=Sequence derived from alignment at tig00000850_pilon:1259517..1260170+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCCGCAACCCTCGCCTTGTCACACTACTTCTACTTGTATGCGCCCT
TGCGTGCCTTGATACCAACGTCAATGCGTCGGCGCCAGACCAGCATCTGC
CGCCAGTTCGCACGGAGGTGACATTTCAAGAAGACAAGCAACAAAAAAGC
GATGATCCAAACAAAGCCTGGGAAGAGTGGGACGAAACCGACCAATCTCG
TAAGAATCCATTCCCCCGCCGTCAGCGCAAAATCGAGCTGGGCATGGACA
TCAACACCATCATGGGAATGGCCATGAAACAACCCAAAGTGGTTACGGCT
GTTCTTACTCCGCACTTTGGTTCCGACCACAAAATCGGCCAAATGGTCAC
GCAAAAGTTTAGAAATCAACTCGCTGCCGCTGGCATTGGCTGCCGACTGT
GGTTCGTTCCTCACGGCAGACAGGTGGTTGCCAACTGCGATACCATACGC
GATGGTCACATGGCCAAGGATTACATGATTTCGCAGCACGAGATTATGAG
AACCGTCATTGATAATGTGCCCTTCACCCCGAAACCTACGCCTgccgacg
acgatgatgacgacgatgatgatgacgacgacgatgacgaccacGCCGCC
GCCCACCGCCTCACGGCAGCTGCTACCAACATGGAAGAAAAATCAGAACT
ATAA
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protein sequence of Ggra3735.t1

>Ggra3735.t1 ID=Ggra3735.t1|Name=Ggra3735.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=218bp
MIRNPRLVTLLLLVCALACLDTNVNASAPDQHLPPVRTEVTFQEDKQQKS
DDPNKAWEEWDETDQSRKNPFPRRQRKIELGMDINTIMGMAMKQPKVVTA
VLTPHFGSDHKIGQMVTQKFRNQLAAAGIGCRLWFVPHGRQVVANCDTIR
DGHMAKDYMISQHEIMRTVIDNVPFTPKPTPADDDDDDDDDDDDDDDHAA
AHRLTAAATNMEEKSEL*
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mRNA from alignment at tig00000850_pilon:1259517..1260170+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3735.t1 ID=Ggra3735.t1|Name=Ggra3735.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=654bp|location=Sequence derived from alignment at tig00000850_pilon:1259517..1260170+ (Gracilaria gracilis GNS1m male)
ATGATCCGCAACCCTCGCCTTGTCACACTACTTCTACTTGTATGCGCCCT
TGCGTGCCTTGATACCAACGTCAATGCGTCGGCGCCAGACCAGCATCTGC
CGCCAGTTCGCACGGAGGTGACATTTCAAGAAGACAAGCAACAAAAAAGC
GATGATCCAAACAAAGCCTGGGAAGAGTGGGACGAAACCGACCAATCTCG
TAAGAATCCATTCCCCCGCCGTCAGCGCAAAATCGAGCTGGGCATGGACA
TCAACACCATCATGGGAATGGCCATGAAACAACCCAAAGTGGTTACGGCT
GTTCTTACTCCGCACTTTGGTTCCGACCACAAAATCGGCCAAATGGTCAC
GCAAAAGTTTAGAAATCAACTCGCTGCCGCTGGCATTGGCTGCCGACTGT
GGTTCGTTCCTCACGGCAGACAGGTGGTTGCCAACTGCGATACCATACGC
GATGGTCACATGGCCAAGGATTACATGATTTCGCAGCACGAGATTATGAG
AACCGTCATTGATAATGTGCCCTTCACCCCGAAACCTACGCCTgccgacg
acgatgatgacgacgatgatgatgacgacgacgatgacgaccacGCCGCC
GCCCACCGCCTCACGGCAGCTGCTACCAACATGGAAGAAAAATCAGAACT
ATAA
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Coding sequence (CDS) from alignment at tig00000850_pilon:1259517..1260170+

>Ggra3735.t1 ID=Ggra3735.t1|Name=Ggra3735.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=654bp|location=Sequence derived from alignment at tig00000850_pilon:1259517..1260170+ (Gracilaria gracilis GNS1m male)
ATGATCCGCAACCCTCGCCTTGTCACACTACTTCTACTTGTATGCGCCCT
TGCGTGCCTTGATACCAACGTCAATGCGTCGGCGCCAGACCAGCATCTGC
CGCCAGTTCGCACGGAGGTGACATTTCAAGAAGACAAGCAACAAAAAAGC
GATGATCCAAACAAAGCCTGGGAAGAGTGGGACGAAACCGACCAATCTCG
TAAGAATCCATTCCCCCGCCGTCAGCGCAAAATCGAGCTGGGCATGGACA
TCAACACCATCATGGGAATGGCCATGAAACAACCCAAAGTGGTTACGGCT
GTTCTTACTCCGCACTTTGGTTCCGACCACAAAATCGGCCAAATGGTCAC
GCAAAAGTTTAGAAATCAACTCGCTGCCGCTGGCATTGGCTGCCGACTGT
GGTTCGTTCCTCACGGCAGACAGGTGGTTGCCAACTGCGATACCATACGC
GATGGTCACATGGCCAAGGATTACATGATTTCGCAGCACGAGATTATGAG
AACCGTCATTGATAATGTGCCCTTCACCCCGAAACCTACGCCTgccgacg
acgatgatgacgacgatgatgatgacgacgacgatgacgaccacGCCGCC
GCCCACCGCCTCACGGCAGCTGCTACCAACATGGAAGAAAAATCAGAACT
ATAA
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