Ggra3734.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3734.t1
Unique NameGgra3734.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length515
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1255728..1257475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707714.1
PFAMsPH,Pkinase
Max annot lvl2759|Eukaryota
KEGG koko:K04456,ko:K13303
KEGG Pathwayko01521,ko01522,ko01524,ko04010,ko04012,ko04014,ko04015,ko04022,ko04024,ko04062,ko04066,ko04068,ko04071,ko04072,ko04140,ko04150,ko04151,ko04152,ko04210,ko04211,ko04212,ko04213,ko04218,ko04261,ko04370,ko04371,ko04380,ko04510,ko04550,ko04611,ko04620,ko04630,ko04660,ko04662,ko04664,ko04666,ko04668,ko04722,ko04725,ko04728,ko04910,ko04914,ko04915,ko04917,ko04919,ko04920,ko04922,ko04923,ko04926,ko04931,ko04932,ko04933,ko04973,ko05142,ko05145,ko05152,ko05160,ko05161,ko05162,ko05164,ko05165,ko05166,ko05167,ko05169,ko05200,ko05205,ko05210,ko05211,ko05212,ko05213,ko05214,ko05215,ko05218,ko05220,ko05221,ko05222,ko05223,ko05224,ko05225,ko05226,ko05230,ko05231,ko05418,map01521,map01522,map01524,map04010,map04012,map04014,map04015,map04022,map04024,map04062,map04066,map04068,map04071,map04072,map04140,map04150,map04151,map04152,map04210,map04211,map04212,map04213,map04218,map04261,map04370,map04371,map04380,map04510,map04550,map04611,map04620,map04630,map04660,map04662,map04664,map04666,map04668,map04722,map04725,map04728,map04910,map04914,map04915,map04917,map04919,map04920,map04922,map04923,map04926,map04931,map04932,map04933,map04973,map05142,map05145,map05152,map05160,map05161,map05162,map05164,map05165,map05166,map05167,map05169,map05200,map05205,map05210,map05211,map05212,map05213,map05214,map05215,map05218,map05220,map05221,map05222,map05223,map05224,map05225,map05226,map05230,map05231,map05418
KEGG ModuleM00676
Evalue2.98e-97
EggNOG OGsKOG0598@1|root,KOG0598@2759|Eukaryota
EC2.7.11.1
Descriptionprotein serine/threonine kinase activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3734Ggra3734Gracilaria gracilis GNS1m malegenetig00000850_pilon 1255728..1257475 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3734.t1Ggra3734.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 1255728..1257475 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3734.t1.stop1Ggra3734.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 1255728..1255730 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3734.t1.CDS1Ggra3734.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1255728..1255733 -
Ggra3734.t1.CDS2Ggra3734.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1255860..1255893 -
Ggra3734.t1.CDS3Ggra3734.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1255971..1257475 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3734.t1.exon1Ggra3734.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 1255728..1255733 -
Ggra3734.t1.exon2Ggra3734.t1.exon2Gracilaria gracilis GNS1m maleexontig00000850_pilon 1255860..1255893 -
Ggra3734.t1.exon3Ggra3734.t1.exon3Gracilaria gracilis GNS1m maleexontig00000850_pilon 1255971..1257475 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3734.t1.intron1Ggra3734.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000850_pilon 1255734..1255859 -
Ggra3734.t1.intron2Ggra3734.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000850_pilon 1255894..1255970 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3734.t1.start1Ggra3734.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 1257473..1257475 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3734.t1 ID=Ggra3734.t1|Name=Ggra3734.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=515bp
MNGSRVARSSHEEALGLVRRIPAVKSAWVYARPVGNLRWRASKRCWAELR
GNTLLLHVVGEQSSRANPEQLARRTASENVMMINLKDSRIRSDTKKNRIR
IKRSSGDHSIELKMKDSVETKKWHSALVRAATHRATSLNDFEILSQVGKG
ASGRVFLVRDRLTAEHLALKVIEKSFVYENDDAYRHALDERLVLEMACDH
PFILNLRYAFQTSKRLYIVTEFCDGGDLFDYLKRRGKPFKEPEGRRIAAE
ILLALEYIHSLGVVYRDLKLENVLLDLDGHVRIADFGLSKLLGKRRHHSR
RPPPIPSPNLRIAPPKPVNMTKTFCGTREYIAPEMLNGSEYGQSVDLWAF
GILLYEILCGRTPFYSRNREEVYTKIESGPLRFPRNLSAEVVSLIRGLLD
RNPNTRLGLGPQGISEIKQHDFFHSMDWEALFMKEDHPDNIVVERNPIEI
ASSNSASSKSDPAKLKASKKPVNEIDMAGKEADMLLEDESREEKKRPDVF
ALCARKCTTITVEF*
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spliced messenger RNA

>Ggra3734.t1 ID=Ggra3734.t1|Name=Ggra3734.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1545bp|location=Sequence derived from alignment at tig00000850_pilon:1255728..1257475- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGGCTCCCGCGTAGCTCGCAGCTCGCACGAGGAGGCGCTCGGCCT
CGTGCGGCGCATCCCCGCCGTCAAGTCCGCGTGGGTGTACGCCCGTCCCG
TCGGCAACTTGCGCTGGCGTGCCTCCAAGCGCTGTTGGGCCGAGCTTCGA
GGCAACACCCTTCTTCTCCACGTCGTGGGCGAACAAAGCTCACGCGCCAA
CCCCGAACAACTTGCGCGTCGCACCGCCTCGGAGAACGTCATGATGATCA
ACCTCAAAGACTCCCGCATCCGCAGCGACACCAAGAAGAACCGCATTCGT
ATCAAGCGCTCGTCGGGCGATCACTCCATCGAGCTCAAGATGAAGGATTC
CGTCGAGACCAAAAAGTGGCACTCCGCGCTTGTGCGCGCTGCCACACACC
GAGCTACTTCTCTCAATGACTTTGAGATTTTGTCACAGGTCGGTAAGGGC
GCCAGTGGTCGTGTCTTCCTTGTTCGCGATAGGCTTACCGCCGAGCACCT
AGCACTCAAGGTCATCGAGAAGAGTTTTGTCTATGAGAACGACGATGCAT
ACCGTCACGCCCTCGATGAGCGCCTTGTTCTGGAAATGGCATGTGACCAC
CCCTTTATTCTCAACCTTCGTTACGCTTTTCAGACTTCCAAACGTCTGTA
CATCGTCACTGAGTTTTGCGACGGCGGTGACTTGTTCGACTACCTCAAGA
GACGCGGCAAGCCTTTCAAGGAACCTGAAGGACGCCGCATTGCCGCCGAA
ATCTTGCTTGCGCTGGAGTACATTCACAGCCTGGGTGTCGTGTATCGTGA
CCTCAAGCTTGAAAACGTCCTGCTTGACCTCGATGGTCACGTTCGAATTG
CTGATTTTGGCTTGTCAAAGCTTTTGGGCAAGAGAAGGCATCATTCGCGC
AGACCACCTCCTATTCCTTCACCCAATTTGCGCATCGCTCCACCGAAACC
TGTCAATATGACCAAGACCTTCTGTGGTACTCGCGAATACATTGCTCCGG
AGATGCTCAACGGTAGCGAGTATGGTCAGTCCGTTGACTTGTGGGCTTTT
GGTATTTTGTTGTACGAAATTTTGTGTGGTAGAACCCCTTTTTACTCGCG
CAACCGTGAGGAAGTGTACACCAAGATTGAGAGCGGTCCATTGCGCTTTC
CGAGAAACCTGTCGGCAGAGGTTGTGTCATTGATACGCGGTTTACTTGAT
CGCAACCCTAATACGAGGTTGGGTCTTGGTCCTCAAGGGATCAGTGAAAT
CAAACAACACGATTTCTTCCACAGTATGGACTGGGAAGCGCTGTTCATGA
AGGAAGATCACCCTGATAATATTGTGGTGGAAAGAAATCCGATTGAGATT
GCCAGTTCGAACAGTGCGTCCTCCAAGTCGGATCCGGCGAAGCTTAAGGC
GTCCAAGAAGCCAGTCAACGAAATAGATATGGCTGGGAAGGAAGCTGATA
TGTTGCTCGAAGACGAATCACGTGAAGAAAAGAAGCGACCAGACGTGTTC
GCCCTATGTGCAAGGAAGTGCACAACTATCACGGTAGAGTTTTGA
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protein sequence of Ggra3734.t1

>Ggra3734.t1 ID=Ggra3734.t1|Name=Ggra3734.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=515bp
MNGSRVARSSHEEALGLVRRIPAVKSAWVYARPVGNLRWRASKRCWAELR
GNTLLLHVVGEQSSRANPEQLARRTASENVMMINLKDSRIRSDTKKNRIR
IKRSSGDHSIELKMKDSVETKKWHSALVRAATHRATSLNDFEILSQVGKG
ASGRVFLVRDRLTAEHLALKVIEKSFVYENDDAYRHALDERLVLEMACDH
PFILNLRYAFQTSKRLYIVTEFCDGGDLFDYLKRRGKPFKEPEGRRIAAE
ILLALEYIHSLGVVYRDLKLENVLLDLDGHVRIADFGLSKLLGKRRHHSR
RPPPIPSPNLRIAPPKPVNMTKTFCGTREYIAPEMLNGSEYGQSVDLWAF
GILLYEILCGRTPFYSRNREEVYTKIESGPLRFPRNLSAEVVSLIRGLLD
RNPNTRLGLGPQGISEIKQHDFFHSMDWEALFMKEDHPDNIVVERNPIEI
ASSNSASSKSDPAKLKASKKPVNEIDMAGKEADMLLEDESREEKKRPDVF
ALCARKCTTITVEF*
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mRNA from alignment at tig00000850_pilon:1255728..1257475-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3734.t1 ID=Ggra3734.t1|Name=Ggra3734.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1748bp|location=Sequence derived from alignment at tig00000850_pilon:1255728..1257475- (Gracilaria gracilis GNS1m male)
ATGAACGGCTCCCGCGTAGCTCGCAGCTCGCACGAGGAGGCGCTCGGCCT
CGTGCGGCGCATCCCCGCCGTCAAGTCCGCGTGGGTGTACGCCCGTCCCG
TCGGCAACTTGCGCTGGCGTGCCTCCAAGCGCTGTTGGGCCGAGCTTCGA
GGCAACACCCTTCTTCTCCACGTCGTGGGCGAACAAAGCTCACGCGCCAA
CCCCGAACAACTTGCGCGTCGCACCGCCTCGGAGAACGTCATGATGATCA
ACCTCAAAGACTCCCGCATCCGCAGCGACACCAAGAAGAACCGCATTCGT
ATCAAGCGCTCGTCGGGCGATCACTCCATCGAGCTCAAGATGAAGGATTC
CGTCGAGACCAAAAAGTGGCACTCCGCGCTTGTGCGCGCTGCCACACACC
GAGCTACTTCTCTCAATGACTTTGAGATTTTGTCACAGGTCGGTAAGGGC
GCCAGTGGTCGTGTCTTCCTTGTTCGCGATAGGCTTACCGCCGAGCACCT
AGCACTCAAGGTCATCGAGAAGAGTTTTGTCTATGAGAACGACGATGCAT
ACCGTCACGCCCTCGATGAGCGCCTTGTTCTGGAAATGGCATGTGACCAC
CCCTTTATTCTCAACCTTCGTTACGCTTTTCAGACTTCCAAACGTCTGTA
CATCGTCACTGAGTTTTGCGACGGCGGTGACTTGTTCGACTACCTCAAGA
GACGCGGCAAGCCTTTCAAGGAACCTGAAGGACGCCGCATTGCCGCCGAA
ATCTTGCTTGCGCTGGAGTACATTCACAGCCTGGGTGTCGTGTATCGTGA
CCTCAAGCTTGAAAACGTCCTGCTTGACCTCGATGGTCACGTTCGAATTG
CTGATTTTGGCTTGTCAAAGCTTTTGGGCAAGAGAAGGCATCATTCGCGC
AGACCACCTCCTATTCCTTCACCCAATTTGCGCATCGCTCCACCGAAACC
TGTCAATATGACCAAGACCTTCTGTGGTACTCGCGAATACATTGCTCCGG
AGATGCTCAACGGTAGCGAGTATGGTCAGTCCGTTGACTTGTGGGCTTTT
GGTATTTTGTTGTACGAAATTTTGTGTGGTAGAACCCCTTTTTACTCGCG
CAACCGTGAGGAAGTGTACACCAAGATTGAGAGCGGTCCATTGCGCTTTC
CGAGAAACCTGTCGGCAGAGGTTGTGTCATTGATACGCGGTTTACTTGAT
CGCAACCCTAATACGAGGTTGGGTCTTGGTCCTCAAGGGATCAGTGAAAT
CAAACAACACGATTTCTTCCACAGTATGGACTGGGAAGCGCTGTTCATGA
AGGAAGATCACCCTGATAATATTGTGGTGGAAAGAAATCCGATTGAGATT
GCCAGTTCGAACAGTGCGTCCTCCAAGTCGGATCCGGCGAAGCTTAAGGC
GTCCAAGAAGCCAGTCAACGAAATAGATATGGCTGGGAAGGAAGCTGATA
TGTTGCTCGAAGACGAATCACGTGAAGAAAAGAAGCGACCAGACGTGTTC
GCCCTGTTCGTCGCAACTAAGAAGAAGTCTGCTAACATCGCGGGCTATTC
GTATGCCGCTGTACCTCAACCTCCAAGGGCAGATGTGCAAGGAAGTGCAC
AACTATCACGGTAGAGGTATGTAAATTTAACAAGGAACAGGAGGAACTTA
ATATGTGAATGTAACGAGTGCTAGACTTGTGATATGCAGCACATTTGTGA
TTATACTGATAGAGCCTAACAAACAACTATCCCTATATACAGTTTTGA
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Coding sequence (CDS) from alignment at tig00000850_pilon:1255728..1257475-

>Ggra3734.t1 ID=Ggra3734.t1|Name=Ggra3734.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1545bp|location=Sequence derived from alignment at tig00000850_pilon:1255728..1257475- (Gracilaria gracilis GNS1m male)
ATGAACGGCTCCCGCGTAGCTCGCAGCTCGCACGAGGAGGCGCTCGGCCT
CGTGCGGCGCATCCCCGCCGTCAAGTCCGCGTGGGTGTACGCCCGTCCCG
TCGGCAACTTGCGCTGGCGTGCCTCCAAGCGCTGTTGGGCCGAGCTTCGA
GGCAACACCCTTCTTCTCCACGTCGTGGGCGAACAAAGCTCACGCGCCAA
CCCCGAACAACTTGCGCGTCGCACCGCCTCGGAGAACGTCATGATGATCA
ACCTCAAAGACTCCCGCATCCGCAGCGACACCAAGAAGAACCGCATTCGT
ATCAAGCGCTCGTCGGGCGATCACTCCATCGAGCTCAAGATGAAGGATTC
CGTCGAGACCAAAAAGTGGCACTCCGCGCTTGTGCGCGCTGCCACACACC
GAGCTACTTCTCTCAATGACTTTGAGATTTTGTCACAGGTCGGTAAGGGC
GCCAGTGGTCGTGTCTTCCTTGTTCGCGATAGGCTTACCGCCGAGCACCT
AGCACTCAAGGTCATCGAGAAGAGTTTTGTCTATGAGAACGACGATGCAT
ACCGTCACGCCCTCGATGAGCGCCTTGTTCTGGAAATGGCATGTGACCAC
CCCTTTATTCTCAACCTTCGTTACGCTTTTCAGACTTCCAAACGTCTGTA
CATCGTCACTGAGTTTTGCGACGGCGGTGACTTGTTCGACTACCTCAAGA
GACGCGGCAAGCCTTTCAAGGAACCTGAAGGACGCCGCATTGCCGCCGAA
ATCTTGCTTGCGCTGGAGTACATTCACAGCCTGGGTGTCGTGTATCGTGA
CCTCAAGCTTGAAAACGTCCTGCTTGACCTCGATGGTCACGTTCGAATTG
CTGATTTTGGCTTGTCAAAGCTTTTGGGCAAGAGAAGGCATCATTCGCGC
AGACCACCTCCTATTCCTTCACCCAATTTGCGCATCGCTCCACCGAAACC
TGTCAATATGACCAAGACCTTCTGTGGTACTCGCGAATACATTGCTCCGG
AGATGCTCAACGGTAGCGAGTATGGTCAGTCCGTTGACTTGTGGGCTTTT
GGTATTTTGTTGTACGAAATTTTGTGTGGTAGAACCCCTTTTTACTCGCG
CAACCGTGAGGAAGTGTACACCAAGATTGAGAGCGGTCCATTGCGCTTTC
CGAGAAACCTGTCGGCAGAGGTTGTGTCATTGATACGCGGTTTACTTGAT
CGCAACCCTAATACGAGGTTGGGTCTTGGTCCTCAAGGGATCAGTGAAAT
CAAACAACACGATTTCTTCCACAGTATGGACTGGGAAGCGCTGTTCATGA
AGGAAGATCACCCTGATAATATTGTGGTGGAAAGAAATCCGATTGAGATT
GCCAGTTCGAACAGTGCGTCCTCCAAGTCGGATCCGGCGAAGCTTAAGGC
GTCCAAGAAGCCAGTCAACGAAATAGATATGGCTGGGAAGGAAGCTGATA
TGTTGCTCGAAGACGAATCACGTGAAGAAAAGAAGCGACCAGACGTGTTC
GCCCTATGTGCAAGGAAGTGCACAACTATCACGGTAGAGTTTTGA
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