Ggra3731.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3731.t1
Unique NameGgra3731.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length296
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1242981..1243868 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3731Ggra3731Gracilaria gracilis GNS1m malegenetig00000850_pilon 1242981..1243868 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3731.t1.stop1Ggra3731.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 1242981..1242983 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3731.t1.CDS1Ggra3731.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1242981..1243868 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3731.t1.exon1Ggra3731.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 1242981..1243868 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3731.t1.start1Ggra3731.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 1243866..1243868 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3731.t1Ggra3731.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 1242981..1243868 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3731.t1 ID=Ggra3731.t1|Name=Ggra3731.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=296bp
MKFYNNMNQKKLQEINVWDSTCERNPLYKSLSEWASDVPDICFSTFGEPN
SWCLDILTIANNAIRFELNDMYEMHRAMVFLKQQLTFHDVKLATLWFRTM
WKFLTRNVLQWHGDILLPWIESRIPQTTSSNETLTTLKRRRGMLEIMSNA
SCSVESLVSRNVSTEADGLLVQCNFAKCIKNVNELGERVLEYLRNCEVLL
SPLLIGAGVSSEERDSAIQDLIVHILQAGRESMEIPILLSWMPVSTKKEF
IKTFLSDNRQRPISRTLYKEWQETEFEARHRDIIRWMSTRARGLQ*
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spliced messenger RNA

>Ggra3731.t1 ID=Ggra3731.t1|Name=Ggra3731.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=888bp|location=Sequence derived from alignment at tig00000850_pilon:1242981..1243868- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTTCTATAACAATATGAACCAGAAGAAACTTCAGGAAATTAATGT
TTGGGATTCAACGTGCGAACGTAATCCCTTGTACAAAAGTCTCTCGGAAT
GGGCATCTGATGTACCAGATATTTGTTTTTCCACCTTTGGAGAGCCCAAT
TCTTGGTGCCTTGACATCTTGACAATAGCGAACAATGCGATTCGGTTCGA
GTTGAACGATATGTACGAAATGCACCGGGCAATGGTATTCCTAAAGCAGC
AACTGACGTTCCATGATGTCAAGCTAGCAACGCTTTGGTTTCGGACGATG
TGGAAGTTCCTCACTAGAAACGTGTTACAATGGCACGGTGACATTCTGCT
TCCATGGATTGAATCTCGCATCCCACAGACAACTTCTTCCAATGAAACTT
TGACCACACTGAAGAGACGAAGAGGTATGTTAGAGATCATGTCTAATGCA
TCATGTTCTGTAGAATCCCTGGTGTCTCGTAATGTTTCGACCGAAGCAGA
TGGTCTTCTTGTACAGTGCAACTTCGCCAAATGCATAAAAAACGTGAACG
AGCTGGGGGAGCGGGTTCTCGAATACTTAAGAAACTGTGAAGTTCTGCTC
TCTCCACTTCTTATTGGAGCTGGCGTTAGCTCAGAGGAACGAGACTCTGC
GATCCAGGATCTTATAGTTCATATACTTCAAGCAGGACGGGAAAGCATGG
AAATTCCCATTCTCCTATCATGGATGCCAGTTTCAACGAAGAAGGAGTTC
ATCAAGACTTTCCTAAGTGACAACCGGCAGCGCCCTATTTCTCGAACGTT
GTACAAAGAATGGCAAGAAACAGAATTCGAAGCAAGACATAGAGATATCA
TCCGGTGGATGAGTACTCGCGCTAGAGGACTGCAGTAA
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protein sequence of Ggra3731.t1

>Ggra3731.t1 ID=Ggra3731.t1|Name=Ggra3731.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=296bp
MKFYNNMNQKKLQEINVWDSTCERNPLYKSLSEWASDVPDICFSTFGEPN
SWCLDILTIANNAIRFELNDMYEMHRAMVFLKQQLTFHDVKLATLWFRTM
WKFLTRNVLQWHGDILLPWIESRIPQTTSSNETLTTLKRRRGMLEIMSNA
SCSVESLVSRNVSTEADGLLVQCNFAKCIKNVNELGERVLEYLRNCEVLL
SPLLIGAGVSSEERDSAIQDLIVHILQAGRESMEIPILLSWMPVSTKKEF
IKTFLSDNRQRPISRTLYKEWQETEFEARHRDIIRWMSTRARGLQ*
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mRNA from alignment at tig00000850_pilon:1242981..1243868-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3731.t1 ID=Ggra3731.t1|Name=Ggra3731.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=888bp|location=Sequence derived from alignment at tig00000850_pilon:1242981..1243868- (Gracilaria gracilis GNS1m male)
ATGAAGTTCTATAACAATATGAACCAGAAGAAACTTCAGGAAATTAATGT
TTGGGATTCAACGTGCGAACGTAATCCCTTGTACAAAAGTCTCTCGGAAT
GGGCATCTGATGTACCAGATATTTGTTTTTCCACCTTTGGAGAGCCCAAT
TCTTGGTGCCTTGACATCTTGACAATAGCGAACAATGCGATTCGGTTCGA
GTTGAACGATATGTACGAAATGCACCGGGCAATGGTATTCCTAAAGCAGC
AACTGACGTTCCATGATGTCAAGCTAGCAACGCTTTGGTTTCGGACGATG
TGGAAGTTCCTCACTAGAAACGTGTTACAATGGCACGGTGACATTCTGCT
TCCATGGATTGAATCTCGCATCCCACAGACAACTTCTTCCAATGAAACTT
TGACCACACTGAAGAGACGAAGAGGTATGTTAGAGATCATGTCTAATGCA
TCATGTTCTGTAGAATCCCTGGTGTCTCGTAATGTTTCGACCGAAGCAGA
TGGTCTTCTTGTACAGTGCAACTTCGCCAAATGCATAAAAAACGTGAACG
AGCTGGGGGAGCGGGTTCTCGAATACTTAAGAAACTGTGAAGTTCTGCTC
TCTCCACTTCTTATTGGAGCTGGCGTTAGCTCAGAGGAACGAGACTCTGC
GATCCAGGATCTTATAGTTCATATACTTCAAGCAGGACGGGAAAGCATGG
AAATTCCCATTCTCCTATCATGGATGCCAGTTTCAACGAAGAAGGAGTTC
ATCAAGACTTTCCTAAGTGACAACCGGCAGCGCCCTATTTCTCGAACGTT
GTACAAAGAATGGCAAGAAACAGAATTCGAAGCAAGACATAGAGATATCA
TCCGGTGGATGAGTACTCGCGCTAGAGGACTGCAGTAA
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Coding sequence (CDS) from alignment at tig00000850_pilon:1242981..1243868-

>Ggra3731.t1 ID=Ggra3731.t1|Name=Ggra3731.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=888bp|location=Sequence derived from alignment at tig00000850_pilon:1242981..1243868- (Gracilaria gracilis GNS1m male)
ATGAAGTTCTATAACAATATGAACCAGAAGAAACTTCAGGAAATTAATGT
TTGGGATTCAACGTGCGAACGTAATCCCTTGTACAAAAGTCTCTCGGAAT
GGGCATCTGATGTACCAGATATTTGTTTTTCCACCTTTGGAGAGCCCAAT
TCTTGGTGCCTTGACATCTTGACAATAGCGAACAATGCGATTCGGTTCGA
GTTGAACGATATGTACGAAATGCACCGGGCAATGGTATTCCTAAAGCAGC
AACTGACGTTCCATGATGTCAAGCTAGCAACGCTTTGGTTTCGGACGATG
TGGAAGTTCCTCACTAGAAACGTGTTACAATGGCACGGTGACATTCTGCT
TCCATGGATTGAATCTCGCATCCCACAGACAACTTCTTCCAATGAAACTT
TGACCACACTGAAGAGACGAAGAGGTATGTTAGAGATCATGTCTAATGCA
TCATGTTCTGTAGAATCCCTGGTGTCTCGTAATGTTTCGACCGAAGCAGA
TGGTCTTCTTGTACAGTGCAACTTCGCCAAATGCATAAAAAACGTGAACG
AGCTGGGGGAGCGGGTTCTCGAATACTTAAGAAACTGTGAAGTTCTGCTC
TCTCCACTTCTTATTGGAGCTGGCGTTAGCTCAGAGGAACGAGACTCTGC
GATCCAGGATCTTATAGTTCATATACTTCAAGCAGGACGGGAAAGCATGG
AAATTCCCATTCTCCTATCATGGATGCCAGTTTCAACGAAGAAGGAGTTC
ATCAAGACTTTCCTAAGTGACAACCGGCAGCGCCCTATTTCTCGAACGTT
GTACAAAGAATGGCAAGAAACAGAATTCGAAGCAAGACATAGAGATATCA
TCCGGTGGATGAGTACTCGCGCTAGAGGACTGCAGTAA
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