Ggra3730.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3730.t1
Unique Name	Ggra3730.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	441

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000850_pilon	contig	tig00000850_pilon:1241657..1242979 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1192034.CAP_4233
PFAMs	Methyltransf_32
Max annot lvl	28221\|Deltaproteobacteria
Evalue	2.2e-27
EggNOG OGs	2C7MP@1\|root,2Z7Q4@2\|Bacteria,1NHK1@1224\|Proteobacteria,4308Z@68525\|delta/epsilon subdivisions,2WVCK@28221\|Deltaproteobacteria,2Z2TE@29\|Myxococcales
Description	Methyltransferase domain
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3730	Ggra3730	Gracilaria gracilis GNS1m male	gene	tig00000850_pilon 1241657..1242979 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3730.t1.start1	Ggra3730.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000850_pilon 1241657..1241659 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3730.t1.CDS1	Ggra3730.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000850_pilon 1241657..1242979 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3730.t1.exon1	Ggra3730.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000850_pilon 1241657..1242979 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3730.t1.stop1	Ggra3730.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000850_pilon 1242977..1242979 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3730.t1	Ggra3730.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000850_pilon 1241657..1242979 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000850_pilon:1241657..1242979+
coding sequence from alignment at tig00000850_pilon:1241657..1242979+

mRNA sequence

>Ggra3730.t1 ID=Ggra3730.t1|Name=Ggra3730.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=441bp
MERRVYETKTNRRLSFMFRTPPPSQALNVLIPHADTICSLLHHRIHSPTP
PAHLDPLTVEFLTSIPDSFLRQIELKGAWNVLPDMDIPPFLRNLTTLAAD
ISHYFPCVGSYHENQALVLEHNLSSPKPFPRRRIKLAKLHQIQSVTNCTR
YIASQVTPHSIQRVVDMGAGHAHLAASLGTVLDLPTVAIDRDPTLIQTAK
DLYGTIPNLTLHGSAIETLNNSTLKVTRNDMLVGLHSCGSLGEMILKASV
EKQVAAVFLVSCCLQKLHPSALFREPLSDVVLQEPKLRKLLTMERRFLGA
TNRSRNASHNSKRARVTRYALKKLLADRGLSCQHGDEVSGLSRHAFKHGL
LHVAKKFVDAHNMDLRLEETEASQRMQAAAVDYRHMQALNIPRAIAGEVL
EMAIILDRASMLENSFPTVRTMRVWPESISVKNLAIAAWR*

spliced messenger RNA

>Ggra3730.t1 ID=Ggra3730.t1|Name=Ggra3730.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1323bp|location=Sequence derived from alignment at tig00000850_pilon:1241657..1242979+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCGCCGTGTATATGAAACGAAAACGAACAGACGCCTTTCGTTCAT
GTTTCGCACCCCACCACCGTCTCAAGCTCTAAACGTCCTCATTCCTCATG
CTGATACAATATGTTCACTTTTGCACCATCGCATTCATTCTCCGACCCCT
CCGGCTCACCTCGATCCACTTACCGTCGAATTTCTTACAAGTATTCCCGA
CTCGTTTCTTCGTCAAATCGAGCTCAAGGGTGCATGGAACGTTTTGCCCG
ACATGGATATCCCACCTTTCCTTCGAAATCTCACTACCCTGGCTGCTGAT
ATTTCTCATTATTTTCCTTGCGTAGGGAGTTATCATGAAAACCAAGCGCT
TGTCTTGGAACACAACTTATCATCGCCGAAGCCATTCCCCCGAAGGCGAA
TTAAATTAGCGAAGCTGCATCAGATTCAATCAGTGACCAATTGCACAAGG
TATATTGCGTCGCAAGTCACTCCACATTCAATACAAAGAGTCGTTGATAT
GGGTGCAGGTCACGCTCACCTTGCCGCGAGTCTTGGGACTGTTCTTGATT
TACCTACTGTTGCTATTGATCGGGACCCTACCTTGATCCAAACTGCGAAA
GACTTGTACGGGACAATACCCAACCTAACTCTACATGGGTCTGCAATCGA
AACGCTGAATAACAGTACACTGAAAGTTACCCGGAACGATATGCTCGTTG
GACTTCATTCCTGTGGTAGCCTTGGGGAAATGATCTTGAAGGCATCTGTA
GAAAAGCAAGTTGCAGCGGTGTTTCTTGTATCATGCTGTTTGCAGAAGTT
GCATCCATCTGCGTTATTTCGCGAACCTCTCTCTGACGTAGTCCTGCAAG
AACCGAAACTAAGAAAACTATTGACGATGGAAAGGCGTTTTCTTGGAGCG
ACAAATAGATCAAGGAACGCGTCGCATAATTCAAAGAGGGCCCGAGTGAC
GCGGTATGCTCTAAAAAAGTTATTGGCTGATCGTGGATTGAGTTGCCAAC
ACGGTGACGAGGTTTCGGGGTTGTCGCGCCATGCTTTCAAACACGGTTTA
CTGCATGTAGCCAAGAAGTTTGTAGATGCACATAACATGGATTTGAGATT
AGAAGAAACTGAAGCTTCTCAGCGAATGCAGGCTGCTGCTGTTGACTACC
GTCACATGCAAGCGTTGAACATCCCTAGGGCAATTGCGGGTGAGGTTCTG
GAAATGGCAATAATTCTAGATAGAGCTTCCATGTTGGAAAATTCATTCCC
GACAGTCCGCACTATGCGAGTATGGCCCGAGTCCATCAGTGTGAAGAATT
TGGCCATAGCAGCATGGAGGTGA

protein sequence of Ggra3730.t1

>Ggra3730.t1 ID=Ggra3730.t1|Name=Ggra3730.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=441bp
MERRVYETKTNRRLSFMFRTPPPSQALNVLIPHADTICSLLHHRIHSPTP
PAHLDPLTVEFLTSIPDSFLRQIELKGAWNVLPDMDIPPFLRNLTTLAAD
ISHYFPCVGSYHENQALVLEHNLSSPKPFPRRRIKLAKLHQIQSVTNCTR
YIASQVTPHSIQRVVDMGAGHAHLAASLGTVLDLPTVAIDRDPTLIQTAK
DLYGTIPNLTLHGSAIETLNNSTLKVTRNDMLVGLHSCGSLGEMILKASV
EKQVAAVFLVSCCLQKLHPSALFREPLSDVVLQEPKLRKLLTMERRFLGA
TNRSRNASHNSKRARVTRYALKKLLADRGLSCQHGDEVSGLSRHAFKHGL
LHVAKKFVDAHNMDLRLEETEASQRMQAAAVDYRHMQALNIPRAIAGEVL
EMAIILDRASMLENSFPTVRTMRVWPESISVKNLAIAAWR*

mRNA from alignment at tig00000850_pilon:1241657..1242979+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3730.t1 ID=Ggra3730.t1|Name=Ggra3730.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1323bp|location=Sequence derived from alignment at tig00000850_pilon:1241657..1242979+ (Gracilaria gracilis GNS1m male)
ATGGAGCGCCGTGTATATGAAACGAAAACGAACAGACGCCTTTCGTTCAT
GTTTCGCACCCCACCACCGTCTCAAGCTCTAAACGTCCTCATTCCTCATG
CTGATACAATATGTTCACTTTTGCACCATCGCATTCATTCTCCGACCCCT
CCGGCTCACCTCGATCCACTTACCGTCGAATTTCTTACAAGTATTCCCGA
CTCGTTTCTTCGTCAAATCGAGCTCAAGGGTGCATGGAACGTTTTGCCCG
ACATGGATATCCCACCTTTCCTTCGAAATCTCACTACCCTGGCTGCTGAT
ATTTCTCATTATTTTCCTTGCGTAGGGAGTTATCATGAAAACCAAGCGCT
TGTCTTGGAACACAACTTATCATCGCCGAAGCCATTCCCCCGAAGGCGAA
TTAAATTAGCGAAGCTGCATCAGATTCAATCAGTGACCAATTGCACAAGG
TATATTGCGTCGCAAGTCACTCCACATTCAATACAAAGAGTCGTTGATAT
GGGTGCAGGTCACGCTCACCTTGCCGCGAGTCTTGGGACTGTTCTTGATT
TACCTACTGTTGCTATTGATCGGGACCCTACCTTGATCCAAACTGCGAAA
GACTTGTACGGGACAATACCCAACCTAACTCTACATGGGTCTGCAATCGA
AACGCTGAATAACAGTACACTGAAAGTTACCCGGAACGATATGCTCGTTG
GACTTCATTCCTGTGGTAGCCTTGGGGAAATGATCTTGAAGGCATCTGTA
GAAAAGCAAGTTGCAGCGGTGTTTCTTGTATCATGCTGTTTGCAGAAGTT
GCATCCATCTGCGTTATTTCGCGAACCTCTCTCTGACGTAGTCCTGCAAG
AACCGAAACTAAGAAAACTATTGACGATGGAAAGGCGTTTTCTTGGAGCG
ACAAATAGATCAAGGAACGCGTCGCATAATTCAAAGAGGGCCCGAGTGAC
GCGGTATGCTCTAAAAAAGTTATTGGCTGATCGTGGATTGAGTTGCCAAC
ACGGTGACGAGGTTTCGGGGTTGTCGCGCCATGCTTTCAAACACGGTTTA
CTGCATGTAGCCAAGAAGTTTGTAGATGCACATAACATGGATTTGAGATT
AGAAGAAACTGAAGCTTCTCAGCGAATGCAGGCTGCTGCTGTTGACTACC
GTCACATGCAAGCGTTGAACATCCCTAGGGCAATTGCGGGTGAGGTTCTG
GAAATGGCAATAATTCTAGATAGAGCTTCCATGTTGGAAAATTCATTCCC
GACAGTCCGCACTATGCGAGTATGGCCCGAGTCCATCAGTGTGAAGAATT
TGGCCATAGCAGCATGGAGGTGA

Coding sequence (CDS) from alignment at tig00000850_pilon:1241657..1242979+

>Ggra3730.t1 ID=Ggra3730.t1|Name=Ggra3730.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1323bp|location=Sequence derived from alignment at tig00000850_pilon:1241657..1242979+ (Gracilaria gracilis GNS1m male)
ATGGAGCGCCGTGTATATGAAACGAAAACGAACAGACGCCTTTCGTTCAT
GTTTCGCACCCCACCACCGTCTCAAGCTCTAAACGTCCTCATTCCTCATG
CTGATACAATATGTTCACTTTTGCACCATCGCATTCATTCTCCGACCCCT
CCGGCTCACCTCGATCCACTTACCGTCGAATTTCTTACAAGTATTCCCGA
CTCGTTTCTTCGTCAAATCGAGCTCAAGGGTGCATGGAACGTTTTGCCCG
ACATGGATATCCCACCTTTCCTTCGAAATCTCACTACCCTGGCTGCTGAT
ATTTCTCATTATTTTCCTTGCGTAGGGAGTTATCATGAAAACCAAGCGCT
TGTCTTGGAACACAACTTATCATCGCCGAAGCCATTCCCCCGAAGGCGAA
TTAAATTAGCGAAGCTGCATCAGATTCAATCAGTGACCAATTGCACAAGG
TATATTGCGTCGCAAGTCACTCCACATTCAATACAAAGAGTCGTTGATAT
GGGTGCAGGTCACGCTCACCTTGCCGCGAGTCTTGGGACTGTTCTTGATT
TACCTACTGTTGCTATTGATCGGGACCCTACCTTGATCCAAACTGCGAAA
GACTTGTACGGGACAATACCCAACCTAACTCTACATGGGTCTGCAATCGA
AACGCTGAATAACAGTACACTGAAAGTTACCCGGAACGATATGCTCGTTG
GACTTCATTCCTGTGGTAGCCTTGGGGAAATGATCTTGAAGGCATCTGTA
GAAAAGCAAGTTGCAGCGGTGTTTCTTGTATCATGCTGTTTGCAGAAGTT
GCATCCATCTGCGTTATTTCGCGAACCTCTCTCTGACGTAGTCCTGCAAG
AACCGAAACTAAGAAAACTATTGACGATGGAAAGGCGTTTTCTTGGAGCG
ACAAATAGATCAAGGAACGCGTCGCATAATTCAAAGAGGGCCCGAGTGAC
GCGGTATGCTCTAAAAAAGTTATTGGCTGATCGTGGATTGAGTTGCCAAC
ACGGTGACGAGGTTTCGGGGTTGTCGCGCCATGCTTTCAAACACGGTTTA
CTGCATGTAGCCAAGAAGTTTGTAGATGCACATAACATGGATTTGAGATT
AGAAGAAACTGAAGCTTCTCAGCGAATGCAGGCTGCTGCTGTTGACTACC
GTCACATGCAAGCGTTGAACATCCCTAGGGCAATTGCGGGTGAGGTTCTG
GAAATGGCAATAATTCTAGATAGAGCTTCCATGTTGGAAAATTCATTCCC
GACAGTCCGCACTATGCGAGTATGGCCCGAGTCCATCAGTGTGAAGAATT
TGGCCATAGCAGCATGGAGGTGA