Ggra3727.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3727.t1
Unique Name	Ggra3727.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	662

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000850_pilon	contig	tig00000850_pilon:1234457..1236442 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3727	Ggra3727	Gracilaria gracilis GNS1m male	gene	tig00000850_pilon 1234457..1236442 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3727.t1.stop1	Ggra3727.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000850_pilon 1234457..1234459 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3727.t1.CDS1	Ggra3727.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000850_pilon 1234457..1236442 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3727.t1.exon1	Ggra3727.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000850_pilon 1234457..1236442 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3727.t1.start1	Ggra3727.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000850_pilon 1236440..1236442 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3727.t1	Ggra3727.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000850_pilon 1234457..1236442 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000850_pilon:1234457..1236442-
coding sequence from alignment at tig00000850_pilon:1234457..1236442-

mRNA sequence

>Ggra3727.t1 ID=Ggra3727.t1|Name=Ggra3727.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=662bp
MNVRLVIITLFAALLVLPSTSAQAASKASGRRGRFADLTPNTGNVASFNN
GHLERRDEGQDVSSSGQTHFPQHAVVTGLLQPGNKVINRESLARVKVNKM
ENSTSTVKTPAVMSDVSGDPGSRHEDADTIHEFSHGSNQLPENEAKGHTE
DGLHLNGNHSHEQSLDLEERKLKSASNKLVKWLRNRLRKRLADVAHLESD
MTTERELLKTLNDEIEDASREREDEIKQKLQTKKELSDFRRHSNSPNAGM
KRVQSQTKALSEQLERVKEAYESMIARHKDLETKLKHSGFAHWLEARGSD
YFPDTAIGVLSKSAQILGPVSHGFQRALLFDDQLSTEMEQIVPGSDETIL
HKIVWDITMMVPFIPFILLLRLGNGMIHRLSVYDIVLCGSGLFAAECALC
FVMSVFFSREILGVCQEINETILITLLFTNALIYFVSLVAQILISCLRPS
RTEVVQVILLFTVGCRYYQYVFRPVMLSKPVMVTILSHVLYIITFSLIFI
EKKRAMNFKTSYDVYCYKTMAILKAWVSETGNAMRNMFSDVLPYGSRSYT
ESGYGSRSSFYASVSNGDVNSELNGEMSTEAIEPLEYKQVPRTQQGTDYF
GQNKWYPVNRSASLIRKTFTASQEYGDRMNSNSANSNKLGRGQKRSNSGS
DDSVAYQSCME*

spliced messenger RNA

>Ggra3727.t1 ID=Ggra3727.t1|Name=Ggra3727.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1986bp|location=Sequence derived from alignment at tig00000850_pilon:1234457..1236442- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGTAAGACTGGTAATCATAACTCTATTCGCTGCGCTTCTTGTCCT
CCCCAGCACTTCTGCCCAAGCCGCGTCAAAAGCATCAGGGAGAAGGGGGC
GATTTGCGGATCTAACCCCCAATACCGGCAATGTGGCATCCTTTAACAAC
GGTCATCTTGAAAGACGCGATGAAGGACAAGATGTTAGCAGTTCAGGTCA
AACACATTTTCCACAGCATGCTGTCGTGACGGGGCTTTTGCAACCGGGAA
ATAAGGTGATCAACCGAGAGTCATTGGCGAGAGTGAAAGTGAATAAGATG
GAGAATAGTACTTCGACGGTAAAAACTCCTGCAGTTATGAGCGATGTGTC
CGGAGACCCAGGTAGCCGCCACGAAGATGCTGATACGATTCACGAGTTCT
CTCATGGTAGTAACCAACTTCCCGAAAACGAAGCAAAGGGCCACACCGAG
GATGGGCTTCACTTAAATGGGAATCATAGCCACGAGCAGTCTCTTGATTT
AGAAGAAAGAAAGCTTAAGTCTGCGTCGAACAAGCTGGTAAAGTGGTTGA
GAAACCGTTTGAGAAAACGGTTGGCAGATGTAGCGCATCTTGAAAGCGAT
ATGACAACAGAAAGAGAGCTTCTGAAGACCTTGAATGACGAAATAGAAGA
CGCATCTCGTGAACGAGAGGATGAGATCAAGCAAAAGCTACAGACGAAGA
AGGAATTGTCTGATTTTCGACGTCATTCGAACTCTCCCAATGCTGGAATG
AAGCGTGTTCAAAGTCAAACAAAGGCCTTATCAGAACAACTAGAAAGAGT
GAAAGAAGCTTATGAATCTATGATTGCGAGGCATAAGGACCTCGAAACGA
AGCTAAAGCATTCTGGATTTGCTCACTGGCTTGAAGCACGTGGTAGCGAC
TATTTCCCGGACACAGCAATTGGTGTTCTTTCTAAATCTGCTCAAATACT
GGGTCCAGTTTCTCATGGATTCCAGAGAGCTCTGCTATTTGATGACCAAC
TTTCTACAGAGATGGAACAAATCGTTCCAGGTTCGGATGAAACCATTCTG
CACAAGATTGTATGGGATATAACTATGATGGTTCCATTCATCCCGTTTAT
ATTGCTTCTTCGTCTTGGCAACGGAATGATTCACCGTCTTTCTGTTTATG
ATATTGTTTTATGTGGATCCGGTCTCTTCGCTGCAGAATGTGCTCTCTGT
TTTGTCATGTCAGTTTTCTTCAGTCGAGAAATTCTTGGAGTTTGTCAGGA
AATCAACGAAACTATTCTCATCACACTTCTGTTCACCAACGCTTTGATAT
ACTTCGTTTCGCTTGTCGCCCAGATTTTGATATCATGTCTTCGACCCTCT
CGGACAGAGGTGGTACAAGTGATATTGCTTTTCACCGTTGGCTGTCGTTA
CTATCAGTATGTATTCCGACCGGTAATGCTCAGCAAGCCGGTTATGGTCA
CTATTCTCAGCCACGTGTTGTATATCATCACATTCTCTCTCATTTTCATC
GAGAAGAAACGGGCAATGAACTTTAAGACCTCTTATGATGTGTACTGCTA
TAAGACAATGGCAATTCTAAAGGCTTGGGTATCTGAGACTGGCAATGCCA
TGCGCAACATGTTTTCTGACGTTCTGCCATACGGCTCTCGGAGCTACACT
GAAAGTGGGTACGGAAGCAGGTCCTCGTTTTACGCATCTGTATCAAACGG
TGACGTCAACTCAGAACTCAACGGAGAAATGTCAACTGAAGCAATAGAAC
CTTTGGAGTACAAGCAAGTACCTCGTACACAACAGGGTACGGATTATTTT
GGACAAAACAAGTGGTATCCCGTGAACCGGTCCGCCAGTTTGATCAGGAA
AACATTCACAGCGAGTCAGGAATACGGGGATCGCATGAATTCAAACTCAG
CAAATTCGAACAAGTTAGGGAGGGGCCAGAAGAGATCGAACTCTGGTTCA
GATGATTCCGTTGCATATCAGTCCTGTATGGAGTGA

protein sequence of Ggra3727.t1

>Ggra3727.t1 ID=Ggra3727.t1|Name=Ggra3727.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=662bp
MNVRLVIITLFAALLVLPSTSAQAASKASGRRGRFADLTPNTGNVASFNN
GHLERRDEGQDVSSSGQTHFPQHAVVTGLLQPGNKVINRESLARVKVNKM
ENSTSTVKTPAVMSDVSGDPGSRHEDADTIHEFSHGSNQLPENEAKGHTE
DGLHLNGNHSHEQSLDLEERKLKSASNKLVKWLRNRLRKRLADVAHLESD
MTTERELLKTLNDEIEDASREREDEIKQKLQTKKELSDFRRHSNSPNAGM
KRVQSQTKALSEQLERVKEAYESMIARHKDLETKLKHSGFAHWLEARGSD
YFPDTAIGVLSKSAQILGPVSHGFQRALLFDDQLSTEMEQIVPGSDETIL
HKIVWDITMMVPFIPFILLLRLGNGMIHRLSVYDIVLCGSGLFAAECALC
FVMSVFFSREILGVCQEINETILITLLFTNALIYFVSLVAQILISCLRPS
RTEVVQVILLFTVGCRYYQYVFRPVMLSKPVMVTILSHVLYIITFSLIFI
EKKRAMNFKTSYDVYCYKTMAILKAWVSETGNAMRNMFSDVLPYGSRSYT
ESGYGSRSSFYASVSNGDVNSELNGEMSTEAIEPLEYKQVPRTQQGTDYF
GQNKWYPVNRSASLIRKTFTASQEYGDRMNSNSANSNKLGRGQKRSNSGS
DDSVAYQSCME*

mRNA from alignment at tig00000850_pilon:1234457..1236442-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3727.t1 ID=Ggra3727.t1|Name=Ggra3727.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1986bp|location=Sequence derived from alignment at tig00000850_pilon:1234457..1236442- (Gracilaria gracilis GNS1m male)
ATGAATGTAAGACTGGTAATCATAACTCTATTCGCTGCGCTTCTTGTCCT
CCCCAGCACTTCTGCCCAAGCCGCGTCAAAAGCATCAGGGAGAAGGGGGC
GATTTGCGGATCTAACCCCCAATACCGGCAATGTGGCATCCTTTAACAAC
GGTCATCTTGAAAGACGCGATGAAGGACAAGATGTTAGCAGTTCAGGTCA
AACACATTTTCCACAGCATGCTGTCGTGACGGGGCTTTTGCAACCGGGAA
ATAAGGTGATCAACCGAGAGTCATTGGCGAGAGTGAAAGTGAATAAGATG
GAGAATAGTACTTCGACGGTAAAAACTCCTGCAGTTATGAGCGATGTGTC
CGGAGACCCAGGTAGCCGCCACGAAGATGCTGATACGATTCACGAGTTCT
CTCATGGTAGTAACCAACTTCCCGAAAACGAAGCAAAGGGCCACACCGAG
GATGGGCTTCACTTAAATGGGAATCATAGCCACGAGCAGTCTCTTGATTT
AGAAGAAAGAAAGCTTAAGTCTGCGTCGAACAAGCTGGTAAAGTGGTTGA
GAAACCGTTTGAGAAAACGGTTGGCAGATGTAGCGCATCTTGAAAGCGAT
ATGACAACAGAAAGAGAGCTTCTGAAGACCTTGAATGACGAAATAGAAGA
CGCATCTCGTGAACGAGAGGATGAGATCAAGCAAAAGCTACAGACGAAGA
AGGAATTGTCTGATTTTCGACGTCATTCGAACTCTCCCAATGCTGGAATG
AAGCGTGTTCAAAGTCAAACAAAGGCCTTATCAGAACAACTAGAAAGAGT
GAAAGAAGCTTATGAATCTATGATTGCGAGGCATAAGGACCTCGAAACGA
AGCTAAAGCATTCTGGATTTGCTCACTGGCTTGAAGCACGTGGTAGCGAC
TATTTCCCGGACACAGCAATTGGTGTTCTTTCTAAATCTGCTCAAATACT
GGGTCCAGTTTCTCATGGATTCCAGAGAGCTCTGCTATTTGATGACCAAC
TTTCTACAGAGATGGAACAAATCGTTCCAGGTTCGGATGAAACCATTCTG
CACAAGATTGTATGGGATATAACTATGATGGTTCCATTCATCCCGTTTAT
ATTGCTTCTTCGTCTTGGCAACGGAATGATTCACCGTCTTTCTGTTTATG
ATATTGTTTTATGTGGATCCGGTCTCTTCGCTGCAGAATGTGCTCTCTGT
TTTGTCATGTCAGTTTTCTTCAGTCGAGAAATTCTTGGAGTTTGTCAGGA
AATCAACGAAACTATTCTCATCACACTTCTGTTCACCAACGCTTTGATAT
ACTTCGTTTCGCTTGTCGCCCAGATTTTGATATCATGTCTTCGACCCTCT
CGGACAGAGGTGGTACAAGTGATATTGCTTTTCACCGTTGGCTGTCGTTA
CTATCAGTATGTATTCCGACCGGTAATGCTCAGCAAGCCGGTTATGGTCA
CTATTCTCAGCCACGTGTTGTATATCATCACATTCTCTCTCATTTTCATC
GAGAAGAAACGGGCAATGAACTTTAAGACCTCTTATGATGTGTACTGCTA
TAAGACAATGGCAATTCTAAAGGCTTGGGTATCTGAGACTGGCAATGCCA
TGCGCAACATGTTTTCTGACGTTCTGCCATACGGCTCTCGGAGCTACACT
GAAAGTGGGTACGGAAGCAGGTCCTCGTTTTACGCATCTGTATCAAACGG
TGACGTCAACTCAGAACTCAACGGAGAAATGTCAACTGAAGCAATAGAAC
CTTTGGAGTACAAGCAAGTACCTCGTACACAACAGGGTACGGATTATTTT
GGACAAAACAAGTGGTATCCCGTGAACCGGTCCGCCAGTTTGATCAGGAA
AACATTCACAGCGAGTCAGGAATACGGGGATCGCATGAATTCAAACTCAG
CAAATTCGAACAAGTTAGGGAGGGGCCAGAAGAGATCGAACTCTGGTTCA
GATGATTCCGTTGCATATCAGTCCTGTATGGAGTGA

Coding sequence (CDS) from alignment at tig00000850_pilon:1234457..1236442-

>Ggra3727.t1 ID=Ggra3727.t1|Name=Ggra3727.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1986bp|location=Sequence derived from alignment at tig00000850_pilon:1234457..1236442- (Gracilaria gracilis GNS1m male)
ATGAATGTAAGACTGGTAATCATAACTCTATTCGCTGCGCTTCTTGTCCT
CCCCAGCACTTCTGCCCAAGCCGCGTCAAAAGCATCAGGGAGAAGGGGGC
GATTTGCGGATCTAACCCCCAATACCGGCAATGTGGCATCCTTTAACAAC
GGTCATCTTGAAAGACGCGATGAAGGACAAGATGTTAGCAGTTCAGGTCA
AACACATTTTCCACAGCATGCTGTCGTGACGGGGCTTTTGCAACCGGGAA
ATAAGGTGATCAACCGAGAGTCATTGGCGAGAGTGAAAGTGAATAAGATG
GAGAATAGTACTTCGACGGTAAAAACTCCTGCAGTTATGAGCGATGTGTC
CGGAGACCCAGGTAGCCGCCACGAAGATGCTGATACGATTCACGAGTTCT
CTCATGGTAGTAACCAACTTCCCGAAAACGAAGCAAAGGGCCACACCGAG
GATGGGCTTCACTTAAATGGGAATCATAGCCACGAGCAGTCTCTTGATTT
AGAAGAAAGAAAGCTTAAGTCTGCGTCGAACAAGCTGGTAAAGTGGTTGA
GAAACCGTTTGAGAAAACGGTTGGCAGATGTAGCGCATCTTGAAAGCGAT
ATGACAACAGAAAGAGAGCTTCTGAAGACCTTGAATGACGAAATAGAAGA
CGCATCTCGTGAACGAGAGGATGAGATCAAGCAAAAGCTACAGACGAAGA
AGGAATTGTCTGATTTTCGACGTCATTCGAACTCTCCCAATGCTGGAATG
AAGCGTGTTCAAAGTCAAACAAAGGCCTTATCAGAACAACTAGAAAGAGT
GAAAGAAGCTTATGAATCTATGATTGCGAGGCATAAGGACCTCGAAACGA
AGCTAAAGCATTCTGGATTTGCTCACTGGCTTGAAGCACGTGGTAGCGAC
TATTTCCCGGACACAGCAATTGGTGTTCTTTCTAAATCTGCTCAAATACT
GGGTCCAGTTTCTCATGGATTCCAGAGAGCTCTGCTATTTGATGACCAAC
TTTCTACAGAGATGGAACAAATCGTTCCAGGTTCGGATGAAACCATTCTG
CACAAGATTGTATGGGATATAACTATGATGGTTCCATTCATCCCGTTTAT
ATTGCTTCTTCGTCTTGGCAACGGAATGATTCACCGTCTTTCTGTTTATG
ATATTGTTTTATGTGGATCCGGTCTCTTCGCTGCAGAATGTGCTCTCTGT
TTTGTCATGTCAGTTTTCTTCAGTCGAGAAATTCTTGGAGTTTGTCAGGA
AATCAACGAAACTATTCTCATCACACTTCTGTTCACCAACGCTTTGATAT
ACTTCGTTTCGCTTGTCGCCCAGATTTTGATATCATGTCTTCGACCCTCT
CGGACAGAGGTGGTACAAGTGATATTGCTTTTCACCGTTGGCTGTCGTTA
CTATCAGTATGTATTCCGACCGGTAATGCTCAGCAAGCCGGTTATGGTCA
CTATTCTCAGCCACGTGTTGTATATCATCACATTCTCTCTCATTTTCATC
GAGAAGAAACGGGCAATGAACTTTAAGACCTCTTATGATGTGTACTGCTA
TAAGACAATGGCAATTCTAAAGGCTTGGGTATCTGAGACTGGCAATGCCA
TGCGCAACATGTTTTCTGACGTTCTGCCATACGGCTCTCGGAGCTACACT
GAAAGTGGGTACGGAAGCAGGTCCTCGTTTTACGCATCTGTATCAAACGG
TGACGTCAACTCAGAACTCAACGGAGAAATGTCAACTGAAGCAATAGAAC
CTTTGGAGTACAAGCAAGTACCTCGTACACAACAGGGTACGGATTATTTT
GGACAAAACAAGTGGTATCCCGTGAACCGGTCCGCCAGTTTGATCAGGAA
AACATTCACAGCGAGTCAGGAATACGGGGATCGCATGAATTCAAACTCAG
CAAATTCGAACAAGTTAGGGAGGGGCCAGAAGAGATCGAACTCTGGTTCA
GATGATTCCGTTGCATATCAGTCCTGTATGGAGTGA