Ggra3726.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3726.t1
Unique Name	Ggra3726.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	734

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000850_pilon	contig	tig00000850_pilon:1228143..1230344 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707714.1
PFAMs	PH,Pkinase
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K04456,ko:K13303
KEGG Pathway	ko01521,ko01522,ko01524,ko04010,ko04012,ko04014,ko04015,ko04022,ko04024,ko04062,ko04066,ko04068,ko04071,ko04072,ko04140,ko04150,ko04151,ko04152,ko04210,ko04211,ko04212,ko04213,ko04218,ko04261,ko04370,ko04371,ko04380,ko04510,ko04550,ko04611,ko04620,ko04630,ko04660,ko04662,ko04664,ko04666,ko04668,ko04722,ko04725,ko04728,ko04910,ko04914,ko04915,ko04917,ko04919,ko04920,ko04922,ko04923,ko04926,ko04931,ko04932,ko04933,ko04973,ko05142,ko05145,ko05152,ko05160,ko05161,ko05162,ko05164,ko05165,ko05166,ko05167,ko05169,ko05200,ko05205,ko05210,ko05211,ko05212,ko05213,ko05214,ko05215,ko05218,ko05220,ko05221,ko05222,ko05223,ko05224,ko05225,ko05226,ko05230,ko05231,ko05418,map01521,map01522,map01524,map04010,map04012,map04014,map04015,map04022,map04024,map04062,map04066,map04068,map04071,map04072,map04140,map04150,map04151,map04152,map04210,map04211,map04212,map04213,map04218,map04261,map04370,map04371,map04380,map04510,map04550,map04611,map04620,map04630,map04660,map04662,map04664,map04666,map04668,map04722,map04725,map04728,map04910,map04914,map04915,map04917,map04919,map04920,map04922,map04923,map04926,map04931,map04932,map04933,map04973,map05142,map05145,map05152,map05160,map05161,map05162,map05164,map05165,map05166,map05167,map05169,map05200,map05205,map05210,map05211,map05212,map05213,map05214,map05215,map05218,map05220,map05221,map05222,map05223,map05224,map05225,map05226,map05230,map05231,map05418
KEGG Module	M00676
Evalue	1.14e-61
EggNOG OGs	KOG0598@1\|root,KOG0598@2759\|Eukaryota
EC	2.7.11.1
Description	protein serine/threonine kinase activity
COG category	H
BRITE	ko00000,ko00001,ko00002,ko01000,ko01001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3726	Ggra3726	Gracilaria gracilis GNS1m male	gene	tig00000850_pilon 1228143..1230344 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3726.t1.start1	Ggra3726.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000850_pilon 1228143..1228145 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3726.t1.CDS1	Ggra3726.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000850_pilon 1228143..1230344 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3726.t1.exon1	Ggra3726.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000850_pilon 1228143..1230344 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3726.t1.stop1	Ggra3726.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000850_pilon 1230342..1230344 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3726.t1	Ggra3726.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000850_pilon 1228143..1230344 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000850_pilon:1228143..1230344+
coding sequence from alignment at tig00000850_pilon:1228143..1230344+

mRNA sequence

>Ggra3726.t1 ID=Ggra3726.t1|Name=Ggra3726.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=734bp
MSRGPREDWRRASGSLNKRSRRAAIFDAAARSADSFSSVAGRWSLSRRRR
SRAASDHKRLRKRRSFHASQRSADDGTPSLHTNTPFVIATTADENRTNQS
AHVSPRYASFGSEGASATSLRDADSRYAHPALRPTFDALRLLRKIPEVMA
GWVQIKCPTGPGRLRWSTWTMFWAELRGGYMLLTRDHNSLAAMSDSTCQN
QVDYIFGATHCTISRFISRSGAVRLRLTRTSSRRRNDSATATSSGIVDVE
DLNFRPSESDPRLSERSGKSTGSERRSFGSTMKRIMSGKLKSKPSTSELA
ISEEISAELVIKIQSAPEADKWEWALRNTTQAYESKRLGDFQLIDALGAG
AFGRVYLVHDTVKGEYLALKVLEKSLVFRDRLHFESAINERLTLELVRGK
PFMAQLRYAFQTASCLYLVTDFYEGGDLFSFLRSHHSDVRESQAIRIIAE
VILALQSMHDMGIVYRDLKPENVLLDSQGHVRLADLGLAKLLSRENDYLT
KTICGSLSYAAPEMLSEKQYGIAFDMWTLGVFIYQVLTGDMPFETENRTR
QEILEDQRKAEIPVNGLSDEGYSLVCALLRPNPLRRPTCEDLKQYPIFAG
INWDELMRKVSHPNSVKDVMEKISLEARSREKEGPTTETVGDESGMYLLR
NFDPEEWSNMSFSDVSDGCSTASFFKPNFHIVDDLPNMTRWIPGWSLTTD
NVVMMSKPQLSVRPLGRKPTTRSTRRLSEKAYR*

spliced messenger RNA

>Ggra3726.t1 ID=Ggra3726.t1|Name=Ggra3726.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2202bp|location=Sequence derived from alignment at tig00000850_pilon:1228143..1230344+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCGAGGTCCCCGCGAAGACTGGCGCCGCGCCTCCGGCTCGCTCAA
CAAgcgctcgcgccgcgccgccatcttcgacgccgctgcgcgcagcgccg
ATTCCTTTTCGTCCGTCGCCGGCCGCTGGTCTCTCTCGCGTCGCCGTCGT
TCACGTGCCGCCTCCGACCACAAGCGTCTGCGCAAGCGACGTTCCTTCCA
CGCCTCGCAGCGAAGCGCTGATGACGGAACGCCCTCTCTTCACACCAACA
CCCCCTTCGTCATAGCCACCACCGCCGATGAGAACCGCACCAACCAAAGC
GCACACGTCTCGCCCAGGTACGCCTCGTTTGGCAGCGAGGGTGCATCCGC
TACCAGCTTGCGTGACGCTGACTCGCGTTATGCACACCCTGCTCTCAGGC
CTACTTTCGACGCCCTGCGTCTTCTCAGGAAGATCCCTGAAGTTATGGCC
GGCTGGGTGCAAATCAAGTGTCCCACCGGCCCTGGTCGTCTCAGATGGTC
GACGTGGACCATGTTTTGGGCGGAACTTAGAGGCGGCTATATGTTGCTCA
CGCGCGACCACAATTCGCTAGCCGCCATGTCTGATTCTACATGCCAGAAT
CAGGTGGACTACATCTTTGGCGCCACTCACTGTACCATTTCACGCTTCAT
CTCGCGCTCGGGTGCGGTGCGTTTGCGCCTTACACGCACTTCGTCCAGAC
GTCGTAATGACTCTGCTACTGCCACCAGCTCGGGCATTGTCGATGTTGAA
GACTTGAACTTCCGTCCAAGCGAATCGGACCCTCGTTTGTCGGAGCGCTC
GGGTAAGAGTACTGGTTCTGAAAGGCGCAGTTTTGGATCCACCATGAAGA
GGATCATGAGTGGCAAACTGAAGAGCAAGCCCTCAACTTCTGAGCTGGCA
ATTTCAGAGGAGATTAGTGCCGAGCTCGTCATAAAGATCCAGAGCGCCCC
GGAAGCCGACAAATGGGAATGGGCGCTGAGAAACACTACTCAGGCTTACG
AATCGAAGCGCCTCGGCGATTTTCAGCTCATAGATGCGCTCGGCGCTGGC
GCATTTGGCCGTGTGTATCTGGTTCACGATACAGTCAAGGGCGAATATCT
TGCGCTAAAAGTGCTCGAAAAGAGCTTGGTTTTCAGGGACAGACTCCATT
TCGAAAGTGCTATTAACGAGCGTCTCACCCTGGAGCTTGTGCGCGGGAAG
CCATTCATGGCACAACTCCGATATGCGTTCCAGACTGCGTCGTGTCTGTA
TCTGGTTACCGATTTTTACGAGGGCGGCGACCTGTTTTCTTTCCTGAGAT
CGCATCATAGCGATGTGAGAGAGAGCCAGGCCATTCGTATTATTGCGGAG
GTTATTTTGGCTCTTCAAAGTATGCACGACATGGGGATCGTGTACAGAGA
TCTCAAGCCAGAAAACGTGCTGCTTGATTCTCAAGGACATGTCCGCTTGG
CTGACCTGGGCCTGGCTAAACTACTAAGCCGCGAGAACGACTATTTGACA
AAAACTATTTGCGGTTCGCTGTCTTATGCTGCGCCGGAGATGTTGAGTGA
GAAGCAGTATGGCATTGCATTTGATATGTGGACCCTGGGTGTATTCATCT
ACCAGGTGCTGACCGGTGATATGCCATTTGAGACAGAAAATAGGACTAGA
CAGGAAATTCTGGAAGACCAGCGGAAGGCTGAGATTCCAGTGAATGGCCT
ATCTGACGAAGGATATTCTTTGGTTTGTGCGCTGCTGCGCCCTAACCCGC
TTCGACGTCCGACATGCGAAGACCTAAAGCAATACCCAATTTTCGCGGGG
ATAAACTGGGACGAGTTGATGCGCAAGGTATCTCATCCAAACTCGGTGAA
GGACGTGATGGAAAAGATTTCTTTGGAGGCCAGGAGCCGGGAGAAAGAGG
GGCCAACCACAGAGACTGTTGGGGATGAAAGTGGGATGTACTTGTTGCGC
AACTTCGATCCAGAGGAATGGTCGAATATGAGCTTCAGTGATGTATCCGA
TGGGTGTTCTACGGCAAGCTTTTTCAAGCCCAATTTCCACATTGTGGACG
ACTTGCCGAATATGACTAGATGGATTCCAGGTTGGAGTCTTACTACTGAC
AACGTGGTTATGATGTCGAAACCACAACTATCTGTGCGGCCCTTAGGTAG
GAAACCGACGACTCGGAGTACACGACGTTTATCGGAGAAGGCGTATCGTT
AG

protein sequence of Ggra3726.t1

>Ggra3726.t1 ID=Ggra3726.t1|Name=Ggra3726.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=734bp
MSRGPREDWRRASGSLNKRSRRAAIFDAAARSADSFSSVAGRWSLSRRRR
SRAASDHKRLRKRRSFHASQRSADDGTPSLHTNTPFVIATTADENRTNQS
AHVSPRYASFGSEGASATSLRDADSRYAHPALRPTFDALRLLRKIPEVMA
GWVQIKCPTGPGRLRWSTWTMFWAELRGGYMLLTRDHNSLAAMSDSTCQN
QVDYIFGATHCTISRFISRSGAVRLRLTRTSSRRRNDSATATSSGIVDVE
DLNFRPSESDPRLSERSGKSTGSERRSFGSTMKRIMSGKLKSKPSTSELA
ISEEISAELVIKIQSAPEADKWEWALRNTTQAYESKRLGDFQLIDALGAG
AFGRVYLVHDTVKGEYLALKVLEKSLVFRDRLHFESAINERLTLELVRGK
PFMAQLRYAFQTASCLYLVTDFYEGGDLFSFLRSHHSDVRESQAIRIIAE
VILALQSMHDMGIVYRDLKPENVLLDSQGHVRLADLGLAKLLSRENDYLT
KTICGSLSYAAPEMLSEKQYGIAFDMWTLGVFIYQVLTGDMPFETENRTR
QEILEDQRKAEIPVNGLSDEGYSLVCALLRPNPLRRPTCEDLKQYPIFAG
INWDELMRKVSHPNSVKDVMEKISLEARSREKEGPTTETVGDESGMYLLR
NFDPEEWSNMSFSDVSDGCSTASFFKPNFHIVDDLPNMTRWIPGWSLTTD
NVVMMSKPQLSVRPLGRKPTTRSTRRLSEKAYR*

mRNA from alignment at tig00000850_pilon:1228143..1230344+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3726.t1 ID=Ggra3726.t1|Name=Ggra3726.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2202bp|location=Sequence derived from alignment at tig00000850_pilon:1228143..1230344+ (Gracilaria gracilis GNS1m male)
ATGTCTCGAGGTCCCCGCGAAGACTGGCGCCGCGCCTCCGGCTCGCTCAA
CAAgcgctcgcgccgcgccgccatcttcgacgccgctgcgcgcagcgccg
ATTCCTTTTCGTCCGTCGCCGGCCGCTGGTCTCTCTCGCGTCGCCGTCGT
TCACGTGCCGCCTCCGACCACAAGCGTCTGCGCAAGCGACGTTCCTTCCA
CGCCTCGCAGCGAAGCGCTGATGACGGAACGCCCTCTCTTCACACCAACA
CCCCCTTCGTCATAGCCACCACCGCCGATGAGAACCGCACCAACCAAAGC
GCACACGTCTCGCCCAGGTACGCCTCGTTTGGCAGCGAGGGTGCATCCGC
TACCAGCTTGCGTGACGCTGACTCGCGTTATGCACACCCTGCTCTCAGGC
CTACTTTCGACGCCCTGCGTCTTCTCAGGAAGATCCCTGAAGTTATGGCC
GGCTGGGTGCAAATCAAGTGTCCCACCGGCCCTGGTCGTCTCAGATGGTC
GACGTGGACCATGTTTTGGGCGGAACTTAGAGGCGGCTATATGTTGCTCA
CGCGCGACCACAATTCGCTAGCCGCCATGTCTGATTCTACATGCCAGAAT
CAGGTGGACTACATCTTTGGCGCCACTCACTGTACCATTTCACGCTTCAT
CTCGCGCTCGGGTGCGGTGCGTTTGCGCCTTACACGCACTTCGTCCAGAC
GTCGTAATGACTCTGCTACTGCCACCAGCTCGGGCATTGTCGATGTTGAA
GACTTGAACTTCCGTCCAAGCGAATCGGACCCTCGTTTGTCGGAGCGCTC
GGGTAAGAGTACTGGTTCTGAAAGGCGCAGTTTTGGATCCACCATGAAGA
GGATCATGAGTGGCAAACTGAAGAGCAAGCCCTCAACTTCTGAGCTGGCA
ATTTCAGAGGAGATTAGTGCCGAGCTCGTCATAAAGATCCAGAGCGCCCC
GGAAGCCGACAAATGGGAATGGGCGCTGAGAAACACTACTCAGGCTTACG
AATCGAAGCGCCTCGGCGATTTTCAGCTCATAGATGCGCTCGGCGCTGGC
GCATTTGGCCGTGTGTATCTGGTTCACGATACAGTCAAGGGCGAATATCT
TGCGCTAAAAGTGCTCGAAAAGAGCTTGGTTTTCAGGGACAGACTCCATT
TCGAAAGTGCTATTAACGAGCGTCTCACCCTGGAGCTTGTGCGCGGGAAG
CCATTCATGGCACAACTCCGATATGCGTTCCAGACTGCGTCGTGTCTGTA
TCTGGTTACCGATTTTTACGAGGGCGGCGACCTGTTTTCTTTCCTGAGAT
CGCATCATAGCGATGTGAGAGAGAGCCAGGCCATTCGTATTATTGCGGAG
GTTATTTTGGCTCTTCAAAGTATGCACGACATGGGGATCGTGTACAGAGA
TCTCAAGCCAGAAAACGTGCTGCTTGATTCTCAAGGACATGTCCGCTTGG
CTGACCTGGGCCTGGCTAAACTACTAAGCCGCGAGAACGACTATTTGACA
AAAACTATTTGCGGTTCGCTGTCTTATGCTGCGCCGGAGATGTTGAGTGA
GAAGCAGTATGGCATTGCATTTGATATGTGGACCCTGGGTGTATTCATCT
ACCAGGTGCTGACCGGTGATATGCCATTTGAGACAGAAAATAGGACTAGA
CAGGAAATTCTGGAAGACCAGCGGAAGGCTGAGATTCCAGTGAATGGCCT
ATCTGACGAAGGATATTCTTTGGTTTGTGCGCTGCTGCGCCCTAACCCGC
TTCGACGTCCGACATGCGAAGACCTAAAGCAATACCCAATTTTCGCGGGG
ATAAACTGGGACGAGTTGATGCGCAAGGTATCTCATCCAAACTCGGTGAA
GGACGTGATGGAAAAGATTTCTTTGGAGGCCAGGAGCCGGGAGAAAGAGG
GGCCAACCACAGAGACTGTTGGGGATGAAAGTGGGATGTACTTGTTGCGC
AACTTCGATCCAGAGGAATGGTCGAATATGAGCTTCAGTGATGTATCCGA
TGGGTGTTCTACGGCAAGCTTTTTCAAGCCCAATTTCCACATTGTGGACG
ACTTGCCGAATATGACTAGATGGATTCCAGGTTGGAGTCTTACTACTGAC
AACGTGGTTATGATGTCGAAACCACAACTATCTGTGCGGCCCTTAGGTAG
GAAACCGACGACTCGGAGTACACGACGTTTATCGGAGAAGGCGTATCGTT
AG

Coding sequence (CDS) from alignment at tig00000850_pilon:1228143..1230344+

>Ggra3726.t1 ID=Ggra3726.t1|Name=Ggra3726.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2202bp|location=Sequence derived from alignment at tig00000850_pilon:1228143..1230344+ (Gracilaria gracilis GNS1m male)
ATGTCTCGAGGTCCCCGCGAAGACTGGCGCCGCGCCTCCGGCTCGCTCAA
CAAgcgctcgcgccgcgccgccatcttcgacgccgctgcgcgcagcgccg
ATTCCTTTTCGTCCGTCGCCGGCCGCTGGTCTCTCTCGCGTCGCCGTCGT
TCACGTGCCGCCTCCGACCACAAGCGTCTGCGCAAGCGACGTTCCTTCCA
CGCCTCGCAGCGAAGCGCTGATGACGGAACGCCCTCTCTTCACACCAACA
CCCCCTTCGTCATAGCCACCACCGCCGATGAGAACCGCACCAACCAAAGC
GCACACGTCTCGCCCAGGTACGCCTCGTTTGGCAGCGAGGGTGCATCCGC
TACCAGCTTGCGTGACGCTGACTCGCGTTATGCACACCCTGCTCTCAGGC
CTACTTTCGACGCCCTGCGTCTTCTCAGGAAGATCCCTGAAGTTATGGCC
GGCTGGGTGCAAATCAAGTGTCCCACCGGCCCTGGTCGTCTCAGATGGTC
GACGTGGACCATGTTTTGGGCGGAACTTAGAGGCGGCTATATGTTGCTCA
CGCGCGACCACAATTCGCTAGCCGCCATGTCTGATTCTACATGCCAGAAT
CAGGTGGACTACATCTTTGGCGCCACTCACTGTACCATTTCACGCTTCAT
CTCGCGCTCGGGTGCGGTGCGTTTGCGCCTTACACGCACTTCGTCCAGAC
GTCGTAATGACTCTGCTACTGCCACCAGCTCGGGCATTGTCGATGTTGAA
GACTTGAACTTCCGTCCAAGCGAATCGGACCCTCGTTTGTCGGAGCGCTC
GGGTAAGAGTACTGGTTCTGAAAGGCGCAGTTTTGGATCCACCATGAAGA
GGATCATGAGTGGCAAACTGAAGAGCAAGCCCTCAACTTCTGAGCTGGCA
ATTTCAGAGGAGATTAGTGCCGAGCTCGTCATAAAGATCCAGAGCGCCCC
GGAAGCCGACAAATGGGAATGGGCGCTGAGAAACACTACTCAGGCTTACG
AATCGAAGCGCCTCGGCGATTTTCAGCTCATAGATGCGCTCGGCGCTGGC
GCATTTGGCCGTGTGTATCTGGTTCACGATACAGTCAAGGGCGAATATCT
TGCGCTAAAAGTGCTCGAAAAGAGCTTGGTTTTCAGGGACAGACTCCATT
TCGAAAGTGCTATTAACGAGCGTCTCACCCTGGAGCTTGTGCGCGGGAAG
CCATTCATGGCACAACTCCGATATGCGTTCCAGACTGCGTCGTGTCTGTA
TCTGGTTACCGATTTTTACGAGGGCGGCGACCTGTTTTCTTTCCTGAGAT
CGCATCATAGCGATGTGAGAGAGAGCCAGGCCATTCGTATTATTGCGGAG
GTTATTTTGGCTCTTCAAAGTATGCACGACATGGGGATCGTGTACAGAGA
TCTCAAGCCAGAAAACGTGCTGCTTGATTCTCAAGGACATGTCCGCTTGG
CTGACCTGGGCCTGGCTAAACTACTAAGCCGCGAGAACGACTATTTGACA
AAAACTATTTGCGGTTCGCTGTCTTATGCTGCGCCGGAGATGTTGAGTGA
GAAGCAGTATGGCATTGCATTTGATATGTGGACCCTGGGTGTATTCATCT
ACCAGGTGCTGACCGGTGATATGCCATTTGAGACAGAAAATAGGACTAGA
CAGGAAATTCTGGAAGACCAGCGGAAGGCTGAGATTCCAGTGAATGGCCT
ATCTGACGAAGGATATTCTTTGGTTTGTGCGCTGCTGCGCCCTAACCCGC
TTCGACGTCCGACATGCGAAGACCTAAAGCAATACCCAATTTTCGCGGGG
ATAAACTGGGACGAGTTGATGCGCAAGGTATCTCATCCAAACTCGGTGAA
GGACGTGATGGAAAAGATTTCTTTGGAGGCCAGGAGCCGGGAGAAAGAGG
GGCCAACCACAGAGACTGTTGGGGATGAAAGTGGGATGTACTTGTTGCGC
AACTTCGATCCAGAGGAATGGTCGAATATGAGCTTCAGTGATGTATCCGA
TGGGTGTTCTACGGCAAGCTTTTTCAAGCCCAATTTCCACATTGTGGACG
ACTTGCCGAATATGACTAGATGGATTCCAGGTTGGAGTCTTACTACTGAC
AACGTGGTTATGATGTCGAAACCACAACTATCTGTGCGGCCCTTAGGTAG
GAAACCGACGACTCGGAGTACACGACGTTTATCGGAGAAGGCGTATCGTT
AG