Ggra3721.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3721.t1
Unique NameGgra3721.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length187
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1208003..1208640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706175.1
Preferred nameTRAPPC3
PFAMsTRAPP
Max annot lvl2759|Eukaryota
KEGG koko:K09493,ko:K20302
GOsGO:0000139,GO:0002790,GO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005793,GO:0005794,GO:0005801,GO:0005829,GO:0006403,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007275,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0017016,GO:0017112,GO:0017137,GO:0018996,GO:0019899,GO:0022607,GO:0030008,GO:0031090,GO:0031267,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032940,GO:0032991,GO:0033036,GO:0033106,GO:0033227,GO:0034613,GO:0035264,GO:0040002,GO:0040007,GO:0042303,GO:0042335,GO:0042338,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048589,GO:0048856,GO:0050657,GO:0050658,GO:0051020,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0061024,GO:0065003,GO:0065007,GO:0065009,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0090114,GO:0097708,GO:0098588,GO:0098772,GO:0098791,GO:0099023,GO:1990070,GO:1990071,GO:1990072
Evalue1.01e-71
EggNOG OGsKOG3330@1|root,KOG3330@2759|Eukaryota
DescriptionGolgi vesicle transport
COG categoryU
BRITEko00000,ko03036,ko03110,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3721Ggra3721Gracilaria gracilis GNS1m malegenetig00000850_pilon 1208003..1208640 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3721.t1Ggra3721.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 1208003..1208640 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3721.t1.stop1Ggra3721.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 1208003..1208005 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3721.t1.CDS1Ggra3721.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1208003..1208023 -
Ggra3721.t1.CDS2Ggra3721.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1208101..1208640 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3721.t1.exon1Ggra3721.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 1208003..1208023 -
Ggra3721.t1.exon2Ggra3721.t1.exon2Gracilaria gracilis GNS1m maleexontig00000850_pilon 1208101..1208640 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3721.t1.intron1Ggra3721.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000850_pilon 1208024..1208100 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3721.t1.start1Ggra3721.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 1208638..1208640 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3721.t1 ID=Ggra3721.t1|Name=Ggra3721.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=187bp
MSRPSLQTIGEAAFARCDRVSAELLALTYGTFVRQLLLDYEQVKDVNAQL
DTIGYNIGVRLVEDFLAKSKINFCQSFVDTADVIAKVAFKMFLGITANVT
SWSSDRTTFSLVFDDNPLAEFTELPPECSDLWYSNILCGVIRGALEMVNM
KVGCSFVRCKLRGDDTNEIRVSLHELLAEQPPQGDD*
back to top

spliced messenger RNA

>Ggra3721.t1 ID=Ggra3721.t1|Name=Ggra3721.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=561bp|location=Sequence derived from alignment at tig00000850_pilon:1208003..1208640- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGCCCGTCGCTGCAGACCATCGGCGAGGCCGCCTTCGCGCGCTG
CGACCGCGTGTCGGCAGAGCTGCTGGCGCTCACGTACGGCACCTTCGTGC
GCCAGCTGCTGCTCGACTACGAGCAGGTCAAGGACGTCAACGCGCAGCTC
GACACCATCGGATACAACATCGGCGTCCGTCTGGTCGAGGATTTCTTGGC
AAAGTCCAAGATCAACTTTTGCCAATCGTTTGTCGACACCGCTGATGTCA
TTGCCAAGGTCGCCTTCAAGATGTTCCTCGGCATCACTGCCAACGTTACG
TCGTGGTCTTCCGATCGCACCACCTTCTCCCTTGTGTTCGACGATAATCC
GCTCGCCGAGTTCACCGAGCTGCCGCCGGAGTGCTCCGATCTGTGGTACT
CCAACATATTGTGCGGCGTCATCCGCGGCGCGTTGGAGATGGTCAACATG
AAGGTTGGCTGCTCGTTTGTGCGATGTAAACTCCGCGGTGATGACACCAA
TGAGATTCGCGTCAGTTTGCACGAGCTCCTCGCAGAACAGCCACCACAAG
GCGATGACTAG
back to top

protein sequence of Ggra3721.t1

>Ggra3721.t1 ID=Ggra3721.t1|Name=Ggra3721.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=187bp
MSRPSLQTIGEAAFARCDRVSAELLALTYGTFVRQLLLDYEQVKDVNAQL
DTIGYNIGVRLVEDFLAKSKINFCQSFVDTADVIAKVAFKMFLGITANVT
SWSSDRTTFSLVFDDNPLAEFTELPPECSDLWYSNILCGVIRGALEMVNM
KVGCSFVRCKLRGDDTNEIRVSLHELLAEQPPQGDD*
back to top

mRNA from alignment at tig00000850_pilon:1208003..1208640-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3721.t1 ID=Ggra3721.t1|Name=Ggra3721.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=638bp|location=Sequence derived from alignment at tig00000850_pilon:1208003..1208640- (Gracilaria gracilis GNS1m male)
ATGTCGCGCCCGTCGCTGCAGACCATCGGCGAGGCCGCCTTCGCGCGCTG
CGACCGCGTGTCGGCAGAGCTGCTGGCGCTCACGTACGGCACCTTCGTGC
GCCAGCTGCTGCTCGACTACGAGCAGGTCAAGGACGTCAACGCGCAGCTC
GACACCATCGGATACAACATCGGCGTCCGTCTGGTCGAGGATTTCTTGGC
AAAGTCCAAGATCAACTTTTGCCAATCGTTTGTCGACACCGCTGATGTCA
TTGCCAAGGTCGCCTTCAAGATGTTCCTCGGCATCACTGCCAACGTTACG
TCGTGGTCTTCCGATCGCACCACCTTCTCCCTTGTGTTCGACGATAATCC
GCTCGCCGAGTTCACCGAGCTGCCGCCGGAGTGCTCCGATCTGTGGTACT
CCAACATATTGTGCGGCGTCATCCGCGGCGCGTTGGAGATGGTCAACATG
AAGGTTGGCTGCTCGTTTGTGCGATGTAAACTCCGCGGTGATGACACCAA
TGAGATTCGCGTCAGTTTGCACGAGCTCCTCGCAGAACAGGTACGTGTGT
CCGTCGCTCTTTGTACTTTATTGCCACATTTGAACCAATGTTCACTAACC
GCTTCGCGTATGCACAGCCACCACAAGGCGATGACTAG
back to top

Coding sequence (CDS) from alignment at tig00000850_pilon:1208003..1208640-

>Ggra3721.t1 ID=Ggra3721.t1|Name=Ggra3721.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=561bp|location=Sequence derived from alignment at tig00000850_pilon:1208003..1208640- (Gracilaria gracilis GNS1m male)
ATGTCGCGCCCGTCGCTGCAGACCATCGGCGAGGCCGCCTTCGCGCGCTG
CGACCGCGTGTCGGCAGAGCTGCTGGCGCTCACGTACGGCACCTTCGTGC
GCCAGCTGCTGCTCGACTACGAGCAGGTCAAGGACGTCAACGCGCAGCTC
GACACCATCGGATACAACATCGGCGTCCGTCTGGTCGAGGATTTCTTGGC
AAAGTCCAAGATCAACTTTTGCCAATCGTTTGTCGACACCGCTGATGTCA
TTGCCAAGGTCGCCTTCAAGATGTTCCTCGGCATCACTGCCAACGTTACG
TCGTGGTCTTCCGATCGCACCACCTTCTCCCTTGTGTTCGACGATAATCC
GCTCGCCGAGTTCACCGAGCTGCCGCCGGAGTGCTCCGATCTGTGGTACT
CCAACATATTGTGCGGCGTCATCCGCGGCGCGTTGGAGATGGTCAACATG
AAGGTTGGCTGCTCGTTTGTGCGATGTAAACTCCGCGGTGATGACACCAA
TGAGATTCGCGTCAGTTTGCACGAGCTCCTCGCAGAACAGCCACCACAAG
GCGATGACTAG
back to top