Ggra3719.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3719.t1
Unique NameGgra3719.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length403
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1203351..1204559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708366.1
Preferred nameAPR1
PFAMsPAPS_reduct,Thioredoxin
Max annot lvl2759|Eukaryota
KEGG rclassRC00007
KEGG koko:K05907
KEGG ReactionR05717
KEGG Pathwayko00920,ko01120,map00920,map01120
GOsGO:0000103,GO:0003674,GO:0003824,GO:0004604,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006790,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009973,GO:0009987,GO:0016491,GO:0016667,GO:0016671,GO:0019379,GO:0019419,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0055114
Evalue4.33e-137
EggNOG OGsCOG0175@1|root,COG0695@1|root,KOG0189@2759|Eukaryota,KOG1752@2759|Eukaryota
EC1.8.4.9
Descriptionprotein disulfide oxidoreductase activity
COG categoryO
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3719Ggra3719Gracilaria gracilis GNS1m malegenetig00000850_pilon 1203351..1204559 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3719.t1.stop1Ggra3719.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 1203351..1203353 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3719.t1.CDS1Ggra3719.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1203351..1204559 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3719.t1.exon1Ggra3719.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 1203351..1204559 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3719.t1.start1Ggra3719.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 1204557..1204559 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3719.t1Ggra3719.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 1203351..1204559 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3719.t1 ID=Ggra3719.t1|Name=Ggra3719.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=403bp
MNAFVVPFCALSRSSFAPSFRPASSARARVPTATSSRRAVIKSAIDFDAL
GEQWTHATGSDRKTPTQIIDHALTNFPGEVAIAFSGAEDVVLIEYASRTK
KPFRVFALDTGRLHPETYRFYSEVERHYGIKIEYTFPDTQEVVEFVNEKG
LFSFYEDGHQECCRVRKVRPLRRKLATLSAWITGQRKDQSPGTRADIPIV
QTDPAFKGKNDSVLIKYNPLANVSSSEVWATIRATEVPYNSLHLAGYISI
GCEPCTRPVLPNQHEREGRWWWEEATQKECGLHKGNISTDAAAAELADEF
VSDAVKGDKVVLFTKRGCPYCAALKDLFAELGVPYMEYEISEMDNYGDIV
ASLERSTGQNTAPNLFIDSQHIGGNEETQNLHAAGKLLPIVEAAGVQLKV
SA*
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spliced messenger RNA

>Ggra3719.t1 ID=Ggra3719.t1|Name=Ggra3719.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1209bp|location=Sequence derived from alignment at tig00000850_pilon:1203351..1204559- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGCCTTCGTCGTGCCGTTTTGCGCCCTGTCTCGCTCGTCGTTTGC
CCCGTCGTTTCGGCCCGCTTCTTCTGCCCGTGCGCGTGTGCCAACTGCTA
CTTCTTCACGTCGAGCCGTTATCAAGTCCGCCATTGACTTTGATGCATTG
GGTGAACAATGGACGCATGCTACTGGTTCGGATCGAAAGACGCCCACGCA
AATCATTGACCACGCCCTCACAAACTTCCCGGGAGAGGTTGCTATTGCGT
TCTCTGGCGCTGAAGACGTCGTTTTAATTGAGTATGCCTCGCGTACCAAG
AAACCTTTCCGCGTTTTCGCCCTCGACACCGGTCGCTTGCATCCCGAGAC
TTACCGCTTTTATTCCGAGGTTGAACGACACTACGGGATTAAGATTGAAT
ACACATTTCCTGACACTCAGGAGGTTGTGGAGTTCGTCAACGAAAAAGGG
TTGTTCTCGTTTTATGAAGATGGCCATCAGGAGTGTTGCAGAGTGCGAAA
AGTTCGCCCGTTGAGAAGGAAGCTTGCAACTCTTTCTGCTTGGATTACGG
GCCAGAGAAAAGATCAGAGCCCTGGCACACGCGCCGATATTCCCATCGTA
CAGACTGATCCGGCCTTCAAGGGTAAGAATGATTCTGTGCTTATCAAATA
TAACCCCCTGGCCAACGTATCATCCAGTGAAGTATGGGCTACCATTCGTG
CCACCGAGGTTCCGTATAATTCGCTTCATCTCGCCGGATATATCTCAATC
GGATGTGAACCGTGCACTAGACCAGTTCTGCCAAACCAACACGAGCGTGA
AGGAAGATGGTGGTGGGAAGAAGCTACACAGAAAGAATGCGGCTTGCACA
AAGGAAATATTTCTACCGATGCTGCAGCCGCTGAACTTGCTGATGAGTTT
GTCTCGGATGCCGTTAAAGGAGATAAAGTGGTGCTTTTTACGAAGAGGGG
ATGTCCGTACTGCGCAGCGTTGAAGGACCTGTTCGCTGAGCTGGGTGTCC
CTTATATGGAATATGAAATAAGTGAGATGGATAATTATGGTGATATTGTC
GCATCTCTTGAAAGGTCTACCGGTCAAAATACTGCCCCAAACTTGTTTAT
TGATTCTCAGCACATCGGTGGCAATGAAGAGACCCAAAATCTACACGCTG
CTGGCAAGCTGTTGCCAATTGTTGAAGCAGCTGGTGTTCAACTCAAGGTT
TCCGCCTGA
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protein sequence of Ggra3719.t1

>Ggra3719.t1 ID=Ggra3719.t1|Name=Ggra3719.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=403bp
MNAFVVPFCALSRSSFAPSFRPASSARARVPTATSSRRAVIKSAIDFDAL
GEQWTHATGSDRKTPTQIIDHALTNFPGEVAIAFSGAEDVVLIEYASRTK
KPFRVFALDTGRLHPETYRFYSEVERHYGIKIEYTFPDTQEVVEFVNEKG
LFSFYEDGHQECCRVRKVRPLRRKLATLSAWITGQRKDQSPGTRADIPIV
QTDPAFKGKNDSVLIKYNPLANVSSSEVWATIRATEVPYNSLHLAGYISI
GCEPCTRPVLPNQHEREGRWWWEEATQKECGLHKGNISTDAAAAELADEF
VSDAVKGDKVVLFTKRGCPYCAALKDLFAELGVPYMEYEISEMDNYGDIV
ASLERSTGQNTAPNLFIDSQHIGGNEETQNLHAAGKLLPIVEAAGVQLKV
SA*
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mRNA from alignment at tig00000850_pilon:1203351..1204559-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3719.t1 ID=Ggra3719.t1|Name=Ggra3719.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1209bp|location=Sequence derived from alignment at tig00000850_pilon:1203351..1204559- (Gracilaria gracilis GNS1m male)
ATGAACGCCTTCGTCGTGCCGTTTTGCGCCCTGTCTCGCTCGTCGTTTGC
CCCGTCGTTTCGGCCCGCTTCTTCTGCCCGTGCGCGTGTGCCAACTGCTA
CTTCTTCACGTCGAGCCGTTATCAAGTCCGCCATTGACTTTGATGCATTG
GGTGAACAATGGACGCATGCTACTGGTTCGGATCGAAAGACGCCCACGCA
AATCATTGACCACGCCCTCACAAACTTCCCGGGAGAGGTTGCTATTGCGT
TCTCTGGCGCTGAAGACGTCGTTTTAATTGAGTATGCCTCGCGTACCAAG
AAACCTTTCCGCGTTTTCGCCCTCGACACCGGTCGCTTGCATCCCGAGAC
TTACCGCTTTTATTCCGAGGTTGAACGACACTACGGGATTAAGATTGAAT
ACACATTTCCTGACACTCAGGAGGTTGTGGAGTTCGTCAACGAAAAAGGG
TTGTTCTCGTTTTATGAAGATGGCCATCAGGAGTGTTGCAGAGTGCGAAA
AGTTCGCCCGTTGAGAAGGAAGCTTGCAACTCTTTCTGCTTGGATTACGG
GCCAGAGAAAAGATCAGAGCCCTGGCACACGCGCCGATATTCCCATCGTA
CAGACTGATCCGGCCTTCAAGGGTAAGAATGATTCTGTGCTTATCAAATA
TAACCCCCTGGCCAACGTATCATCCAGTGAAGTATGGGCTACCATTCGTG
CCACCGAGGTTCCGTATAATTCGCTTCATCTCGCCGGATATATCTCAATC
GGATGTGAACCGTGCACTAGACCAGTTCTGCCAAACCAACACGAGCGTGA
AGGAAGATGGTGGTGGGAAGAAGCTACACAGAAAGAATGCGGCTTGCACA
AAGGAAATATTTCTACCGATGCTGCAGCCGCTGAACTTGCTGATGAGTTT
GTCTCGGATGCCGTTAAAGGAGATAAAGTGGTGCTTTTTACGAAGAGGGG
ATGTCCGTACTGCGCAGCGTTGAAGGACCTGTTCGCTGAGCTGGGTGTCC
CTTATATGGAATATGAAATAAGTGAGATGGATAATTATGGTGATATTGTC
GCATCTCTTGAAAGGTCTACCGGTCAAAATACTGCCCCAAACTTGTTTAT
TGATTCTCAGCACATCGGTGGCAATGAAGAGACCCAAAATCTACACGCTG
CTGGCAAGCTGTTGCCAATTGTTGAAGCAGCTGGTGTTCAACTCAAGGTT
TCCGCCTGA
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Coding sequence (CDS) from alignment at tig00000850_pilon:1203351..1204559-

>Ggra3719.t1 ID=Ggra3719.t1|Name=Ggra3719.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1209bp|location=Sequence derived from alignment at tig00000850_pilon:1203351..1204559- (Gracilaria gracilis GNS1m male)
ATGAACGCCTTCGTCGTGCCGTTTTGCGCCCTGTCTCGCTCGTCGTTTGC
CCCGTCGTTTCGGCCCGCTTCTTCTGCCCGTGCGCGTGTGCCAACTGCTA
CTTCTTCACGTCGAGCCGTTATCAAGTCCGCCATTGACTTTGATGCATTG
GGTGAACAATGGACGCATGCTACTGGTTCGGATCGAAAGACGCCCACGCA
AATCATTGACCACGCCCTCACAAACTTCCCGGGAGAGGTTGCTATTGCGT
TCTCTGGCGCTGAAGACGTCGTTTTAATTGAGTATGCCTCGCGTACCAAG
AAACCTTTCCGCGTTTTCGCCCTCGACACCGGTCGCTTGCATCCCGAGAC
TTACCGCTTTTATTCCGAGGTTGAACGACACTACGGGATTAAGATTGAAT
ACACATTTCCTGACACTCAGGAGGTTGTGGAGTTCGTCAACGAAAAAGGG
TTGTTCTCGTTTTATGAAGATGGCCATCAGGAGTGTTGCAGAGTGCGAAA
AGTTCGCCCGTTGAGAAGGAAGCTTGCAACTCTTTCTGCTTGGATTACGG
GCCAGAGAAAAGATCAGAGCCCTGGCACACGCGCCGATATTCCCATCGTA
CAGACTGATCCGGCCTTCAAGGGTAAGAATGATTCTGTGCTTATCAAATA
TAACCCCCTGGCCAACGTATCATCCAGTGAAGTATGGGCTACCATTCGTG
CCACCGAGGTTCCGTATAATTCGCTTCATCTCGCCGGATATATCTCAATC
GGATGTGAACCGTGCACTAGACCAGTTCTGCCAAACCAACACGAGCGTGA
AGGAAGATGGTGGTGGGAAGAAGCTACACAGAAAGAATGCGGCTTGCACA
AAGGAAATATTTCTACCGATGCTGCAGCCGCTGAACTTGCTGATGAGTTT
GTCTCGGATGCCGTTAAAGGAGATAAAGTGGTGCTTTTTACGAAGAGGGG
ATGTCCGTACTGCGCAGCGTTGAAGGACCTGTTCGCTGAGCTGGGTGTCC
CTTATATGGAATATGAAATAAGTGAGATGGATAATTATGGTGATATTGTC
GCATCTCTTGAAAGGTCTACCGGTCAAAATACTGCCCCAAACTTGTTTAT
TGATTCTCAGCACATCGGTGGCAATGAAGAGACCCAAAATCTACACGCTG
CTGGCAAGCTGTTGCCAATTGTTGAAGCAGCTGGTGTTCAACTCAAGGTT
TCCGCCTGA
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