Ggra3716.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3716.t1
Unique NameGgra3716.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length410
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1186922..1188777 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog227086.JGI_V11_51600
Preferred nameCSE1L
PFAMsCAS_CSE1,Cse1,IBN_N
Max annot lvl2759|Eukaryota
KEGG koko:K18423
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005049,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005829,GO:0005911,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006915,GO:0007589,GO:0008104,GO:0008150,GO:0008219,GO:0008283,GO:0009506,GO:0009987,GO:0012501,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0017038,GO:0017076,GO:0019001,GO:0030054,GO:0031224,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033036,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0035639,GO:0036094,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0050878,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055044,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0097159,GO:0097367,GO:0140104,GO:0140142,GO:1901265,GO:1901363
Evalue8.03e-18
EggNOG OGsCOG5657@1|root,KOG1992@2759|Eukaryota
Descriptionnuclear export signal receptor activity
COG categoryD
BRITEko00000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3716Ggra3716Gracilaria gracilis GNS1m malegenetig00000850_pilon 1186922..1188777 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3716.t1Ggra3716.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 1186922..1188777 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3716.t1.start1Ggra3716.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 1186922..1186924 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3716.t1.CDS1Ggra3716.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1186922..1187491 +
Ggra3716.t1.CDS2Ggra3716.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1187958..1188341 +
Ggra3716.t1.CDS3Ggra3716.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1188502..1188777 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3716.t1.exon1Ggra3716.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 1186922..1187491 +
Ggra3716.t1.exon2Ggra3716.t1.exon2Gracilaria gracilis GNS1m maleexontig00000850_pilon 1187958..1188341 +
Ggra3716.t1.exon3Ggra3716.t1.exon3Gracilaria gracilis GNS1m maleexontig00000850_pilon 1188502..1188777 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3716.t1.intron1Ggra3716.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000850_pilon 1187492..1187957 +
Ggra3716.t1.intron2Ggra3716.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000850_pilon 1188342..1188501 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3716.t1.stop1Ggra3716.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 1188775..1188777 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3716.t1 ID=Ggra3716.t1|Name=Ggra3716.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=410bp
MSFRNQISVQGCMRIAGICGKLLRAEEPIVRTSAASCIERSLAMKKVVQE
GTENGATERPRQRKIPRIGKEQVEAMLPTFLPTVILAMKDTEQGNEYPMR
LVLRFCSVAKELVAPFIGDLLPVLVGILKDVTTNPKNSHFNHYLFESISA
LIRFNAYKSSVANFEKALMEPLCKILVSYVTEFGPYVFQVIFKLLMFRLH
AAKTAKLVKKLVKNLICCISTFVLRFGVEAMKQAFDGVDPNVLQQFLQQI
WIPEVPKIWNPFQRRVCAIALIEVACGTELCTRAPYLEIWPRIVETNVAL
TEGIALDQERSEDDDDENKRNKDYAAGACINSALFLIHSVASSCNMLGRS
TVSLLEQGVEYEAGKDELKHVFYDHSISAVSIEDVSIMTFVIEALLHRVR
LDFSEANQD*
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spliced messenger RNA

>Ggra3716.t1 ID=Ggra3716.t1|Name=Ggra3716.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1230bp|location=Sequence derived from alignment at tig00000850_pilon:1186922..1188777+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATTCCGGAACCAGATATCAGTCCAGGGATGCATGAGAATAGCAGG
CATCTGTGGTAAGCTTCTCCGGGCGGAAGAGCCAATTGTAAGGACTTCCG
CAGCTTCTTGCATAGAACGAAGTTTAGCTATGAAGAAAGTAGTACAGGAA
GGAACCGAAAATGGTGCAACAGAGCGGCCGCGCCAACGAAAAATACCTCG
AATTGGAAAGGAGCAGGTTGAAGCAATGCTTCCAACCTTCTTGCCCACCG
TGATATTGGCAATGAAGGATACTGAACAAGGAAATGAGTATCCTATGCGC
TTAGTTCTTCGATTTTGTTCTGTAGCCAAGGAGCTTGTGGCTCCGTTCAT
TGGGGATCTGCTGCCGGTTCTAGTAGGGATTCTCAAAGACGTCACAACAA
ACCCAAAGAACTCGCACTTCAACCATTATCTGTTTGAATCCATATCGGCT
TTGATTCGGTTCAATGCTTACAAATCGTCGGTTGCGAACTTCGAGAAGGC
GTTGATGGAACCTTTGTGCAAAATTCTTGTATCATATGTAACTGAGTTCG
GCCCATACGTATTTCAAGTAATCTTCAAGCTTTTGATGTTCAGACTACAT
GCGGCGAAGACAGCGAAATTAGTGAAGAAATTAGTGAAGAACTTAATTTG
TTGCATCTCAACGTTTGTTCTCCGATTTGGTGTTGAGGCAATGAAGCAAG
CTTTCGATGGCGTGGATCCGAATGTCTTGCAGCAATTCTTGCAACAGATT
TGGATCCCTGAAGTACCAAAGATTTGGAACCCTTTTCAAAGAAGAGTATG
TGCTATTGCTCTGATTGAAGTGGCATGCGGCACTGAGCTTTGCACACGAG
CTCCCTACTTGGAAATATGGCCTCGTATTGTGGAGACCAATGTGGCTCTC
ACTGAAGGCATTGCGCTCGACCAAGAAAGAAGCGAAGATGACGACGATGA
AAACAAGCGCAACAAGGATTATGCTGCTGGTGCCTGCATAAATTCTGCGT
TATTCCTCATACATTCTGTAGCATCCTCTTGCAATATGCTGGGACGGAGT
ACTGTGTCCTTACTTGAGCAAGGGGTTGAATACGAAGCTGGTAAGGACGA
ATTGAAGCATGTGTTCTACGATCACTCCATATCCGCAGTGTCCATCGAGG
ATGTATCCATCATGACTTTCGTTATCGAGGCTCTACTTCATCGCGTTCGT
CTTGATTTTAGTGAGGCGAATCAAGACTAG
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protein sequence of Ggra3716.t1

>Ggra3716.t1 ID=Ggra3716.t1|Name=Ggra3716.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=410bp
MSFRNQISVQGCMRIAGICGKLLRAEEPIVRTSAASCIERSLAMKKVVQE
GTENGATERPRQRKIPRIGKEQVEAMLPTFLPTVILAMKDTEQGNEYPMR
LVLRFCSVAKELVAPFIGDLLPVLVGILKDVTTNPKNSHFNHYLFESISA
LIRFNAYKSSVANFEKALMEPLCKILVSYVTEFGPYVFQVIFKLLMFRLH
AAKTAKLVKKLVKNLICCISTFVLRFGVEAMKQAFDGVDPNVLQQFLQQI
WIPEVPKIWNPFQRRVCAIALIEVACGTELCTRAPYLEIWPRIVETNVAL
TEGIALDQERSEDDDDENKRNKDYAAGACINSALFLIHSVASSCNMLGRS
TVSLLEQGVEYEAGKDELKHVFYDHSISAVSIEDVSIMTFVIEALLHRVR
LDFSEANQD*
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mRNA from alignment at tig00000850_pilon:1186922..1188777+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3716.t1 ID=Ggra3716.t1|Name=Ggra3716.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1856bp|location=Sequence derived from alignment at tig00000850_pilon:1186922..1188777+ (Gracilaria gracilis GNS1m male)
ATGTCATTCCGGAACCAGATATCAGTCCAGGGATGCATGAGAATAGCAGG
CATCTGTGGTAAGCTTCTCCGGGCGGAAGAGCCAATTGTAAGGACTTCCG
CAGCTTCTTGCATAGAACGAAGTTTAGCTATGAAGAAAGTAGTACAGGAA
GGAACCGAAAATGGTGCAACAGAGCGGCCGCGCCAACGAAAAATACCTCG
AATTGGAAAGGAGCAGGTTGAAGCAATGCTTCCAACCTTCTTGCCCACCG
TGATATTGGCAATGAAGGATACTGAACAAGGAAATGAGTATCCTATGCGC
TTAGTTCTTCGATTTTGTTCTGTAGCCAAGGAGCTTGTGGCTCCGTTCAT
TGGGGATCTGCTGCCGGTTCTAGTAGGGATTCTCAAAGACGTCACAACAA
ACCCAAAGAACTCGCACTTCAACCATTATCTGTTTGAATCCATATCGGCT
TTGATTCGGTTCAATGCTTACAAATCGTCGGTTGCGAACTTCGAGAAGGC
GTTGATGGAACCTTTGTGCAAAATTCTTGTATCATATGTAACTGAGTTCG
GCCCATACGTATTTCAAGTAGTGAGTCAACTTATGCTAGCTCATGATGAC
AAGCTTCCAGATACATATGATAATCTGCTTCCTTCACTACTAGCACCTGA
GATGTGGGAGAGACGATCATATATTCAAAGGAATGACTCAGTTCATCGAC
TCttcttcttcttctttattgtggacaacagtaccttattccgatactgt
agtagagcttcaaaggaagctctttctctttaaaaaggccaagaacttca
tcagttcttggctcccgttggagatccgtctgcgttcccatttcgctccg
tccacgcgagagtggatcgACTCATACATTCGAAAGGGGAAGAGGCGAGT
CGTGAAGCACAGCAGCTAGAACAAGCTCTGGGCATTGTTCAAAAGTTGCT
CGCCTCTAAAGCAACAGACCATCATGCTTTGCAGCTACTAACAACACTCT
TCGAGGTCTATGGTTCTCACTCCATACGTGGTGAAGATCTTCAAGCTTTT
GATGTTCAGACTACATGCGGCGAAGACAGCGAAATTAGTGAAGAAATTAG
TGAAGAACTTAATTTGTTGCATCTCAACGTTTGTTCTCCGATTTGGTGTT
GAGGCAATGAAGCAAGCTTTCGATGGCGTGGATCCGAATGTCTTGCAGCA
ATTCTTGCAACAGATTTGGATCCCTGAAGTACCAAAGATTTGGAACCCTT
TTCAAAGAAGAGTATGTGCTATTGCTCTGATTGAAGTGGCATGCGGCACT
GAGCTTTGCACACGAGCTCCCTACTTGGAAATATGGCCTCGTATTGTGGA
GACCAATGTGGCTCTCACTGAAGGCATTGCGCTCGACCAAGAAAGAAGCG
AAGATGACGACGATGAAAACGTAGGGCCGCTTGGGCTAGCCGAAGTCTAG
CCGAAGTCTACACTGCTGCTCATTAGGAGTGGGGTGTTTCGAGGAAGTCA
AGTCTTTCACCATTTGCGGTGTTCAGGGTGCCATGTTGAAGGCGTATATA
TAGGCTGGTCCGCTTTTTTCTGCCTCGCAGAAGCGCAACAAGGATTATGC
TGCTGGTGCCTGCATAAATTCTGCGTTATTCCTCATACATTCTGTAGCAT
CCTCTTGCAATATGCTGGGACGGAGTACTGTGTCCTTACTTGAGCAAGGG
GTTGAATACGAAGCTGGTAAGGACGAATTGAAGCATGTGTTCTACGATCA
CTCCATATCCGCAGTGTCCATCGAGGATGTATCCATCATGACTTTCGTTA
TCGAGGCTCTACTTCATCGCGTTCGTCTTGATTTTAGTGAGGCGAATCAA
GACTAG
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Coding sequence (CDS) from alignment at tig00000850_pilon:1186922..1188777+

>Ggra3716.t1 ID=Ggra3716.t1|Name=Ggra3716.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1230bp|location=Sequence derived from alignment at tig00000850_pilon:1186922..1188777+ (Gracilaria gracilis GNS1m male)
ATGTCATTCCGGAACCAGATATCAGTCCAGGGATGCATGAGAATAGCAGG
CATCTGTGGTAAGCTTCTCCGGGCGGAAGAGCCAATTGTAAGGACTTCCG
CAGCTTCTTGCATAGAACGAAGTTTAGCTATGAAGAAAGTAGTACAGGAA
GGAACCGAAAATGGTGCAACAGAGCGGCCGCGCCAACGAAAAATACCTCG
AATTGGAAAGGAGCAGGTTGAAGCAATGCTTCCAACCTTCTTGCCCACCG
TGATATTGGCAATGAAGGATACTGAACAAGGAAATGAGTATCCTATGCGC
TTAGTTCTTCGATTTTGTTCTGTAGCCAAGGAGCTTGTGGCTCCGTTCAT
TGGGGATCTGCTGCCGGTTCTAGTAGGGATTCTCAAAGACGTCACAACAA
ACCCAAAGAACTCGCACTTCAACCATTATCTGTTTGAATCCATATCGGCT
TTGATTCGGTTCAATGCTTACAAATCGTCGGTTGCGAACTTCGAGAAGGC
GTTGATGGAACCTTTGTGCAAAATTCTTGTATCATATGTAACTGAGTTCG
GCCCATACGTATTTCAAGTAATCTTCAAGCTTTTGATGTTCAGACTACAT
GCGGCGAAGACAGCGAAATTAGTGAAGAAATTAGTGAAGAACTTAATTTG
TTGCATCTCAACGTTTGTTCTCCGATTTGGTGTTGAGGCAATGAAGCAAG
CTTTCGATGGCGTGGATCCGAATGTCTTGCAGCAATTCTTGCAACAGATT
TGGATCCCTGAAGTACCAAAGATTTGGAACCCTTTTCAAAGAAGAGTATG
TGCTATTGCTCTGATTGAAGTGGCATGCGGCACTGAGCTTTGCACACGAG
CTCCCTACTTGGAAATATGGCCTCGTATTGTGGAGACCAATGTGGCTCTC
ACTGAAGGCATTGCGCTCGACCAAGAAAGAAGCGAAGATGACGACGATGA
AAACAAGCGCAACAAGGATTATGCTGCTGGTGCCTGCATAAATTCTGCGT
TATTCCTCATACATTCTGTAGCATCCTCTTGCAATATGCTGGGACGGAGT
ACTGTGTCCTTACTTGAGCAAGGGGTTGAATACGAAGCTGGTAAGGACGA
ATTGAAGCATGTGTTCTACGATCACTCCATATCCGCAGTGTCCATCGAGG
ATGTATCCATCATGACTTTCGTTATCGAGGCTCTACTTCATCGCGTTCGT
CTTGATTTTAGTGAGGCGAATCAAGACTAG
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