Ggra3714.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3714.t1
Unique Name	Ggra3714.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	517

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000850_pilon	contig	tig00000850_pilon:1176674..1178224 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1279017.AQYJ01000029_gene3385
PFAMs	HemolysinCabind,PAP2
Max annot lvl	1224\|Proteobacteria
Evalue	1.35e-49
EggNOG OGs	COG2931@1\|root,COG2931@2\|Bacteria,1QX4P@1224\|Proteobacteria
Description	calcium- and calmodulin-responsive adenylate cyclase activity
COG category	Q

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3714	Ggra3714	Gracilaria gracilis GNS1m male	gene	tig00000850_pilon 1176674..1178224 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3714.t1.stop1	Ggra3714.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000850_pilon 1176674..1176676 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3714.t1.CDS1	Ggra3714.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000850_pilon 1176674..1178224 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3714.t1.exon1	Ggra3714.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000850_pilon 1176674..1178224 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3714.t1.start1	Ggra3714.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000850_pilon 1178222..1178224 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3714.t1	Ggra3714.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000850_pilon 1176674..1178224 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000850_pilon:1176674..1178224-
coding sequence from alignment at tig00000850_pilon:1176674..1178224-

mRNA sequence

>Ggra3714.t1 ID=Ggra3714.t1|Name=Ggra3714.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=517bp
MEARCKLVITAIALTLITILPRIRAQEAQAAQGPSLADLLTISTNPPNEA
LAAFFPPSIFNAQTPLAIRYALVGSVAQYQIFAACHPVALSFFGDKLHIP
PRFCTNRDQKALIQAHMFYRVMASEFPIDAKPAERLLISRGLNPFDRSTN
TSTPVGWANAASNRLLQYFVTDGWNSQGDVSKRDYRQQYQDYTSYTPVNP
PHVPPHHLQFPLRWQPLTAPVDNRGLFGSQQHVVPQIGTNGKPLALSRQQ
FEQRRAPDLYDNPNRRYNLGRKDRKLAHRLMSNLFKRSSNLTEEKVLISY
MWENKFFSLGLFAGYYQDLLGLGDDIMVPLFFAEMLAQHDATLVAWREKR
RHDYVRPVTLIRKLLKGKKVRAWKGLEEGVGLVNADEWEPVVPIQPHSEY
PSGSAVICTASLENLRIFLETLVLKENGTIPPFEMDIVPGLVPNSPVEKT
VRIAFDSLEEAALSCGESRLDSGVHFEPSVPAGHRLGTGIGKAAFAHVMD
LMQGRIPDNCERCIRT*

spliced messenger RNA

>Ggra3714.t1 ID=Ggra3714.t1|Name=Ggra3714.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1551bp|location=Sequence derived from alignment at tig00000850_pilon:1176674..1178224- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCTCGATGCAAGCTAGTCATAACAGCCATCGCACTTACGCTAAT
CACCATTCTGCCTCGTATTCGAGCGCAGGAAGCGCAAGCCGCGCAAGGCC
CCTCTCTGGCCGATCTGTTGACCATATCCACCAACCCTCCCAACGAAGCT
CTGGCTGCGTTCTTTCCGCCTTCAATCTTTAACGCTCAAACGCCCTTAGC
AATTCGCTATGCTCTTGTCGGGTCTGTTGCGCAGTACCAAATATTTGCAG
CTTGTCATCCAGTTGCTCTTTCCTTCTTTGGAGATAAGCTGCATATCCCG
CCTCGCTTCTGTACCAACCGTGATCAAAAAGCACTGATTCAGGCGCACAT
GTTTTATCGCGTGATGGCCTCTGAGTTTCCTATTGACGCCAAGCCTGCAG
AGCGCCTTCTTATCAGCCGAGGATTGAATCCTTTTGATCGCTCCACCAAT
ACATCCACCCCGGTTGGCTGGGCAAACGCTGCCTCAAATCGCTTGCTTCA
GTACTTTGTCACTGATGGCTGGAATTCACAGGGCGATGTTTCGAAACGCG
ATTATAGACAGCAGTATCAGGACTATACGTCGTATACGCCTGTCAATCCG
CCGCATGTACCGCCGCATCATCTTCAGTTCCCGCTTCGTTGGCAACCGCT
CACTGCGCCAGTTGATAATCGCGGTCTATTCGGCAGCCAGCAACACGTCG
TGCCTCAGATTGGTACCAACGGAAAGCCGCTAGCTTTATCGCGCCAACAG
TTCGAGCAACGTCGTGCACCTGATCTGTACGACAACCCGAATCGTCGCTA
CAACCTTGGTCGAAAGGATAGAAAGCTGGCTCATCGTTTGATGAGCAATC
TTTTTAAACGCTCTTCAAACTTGACTGAGGAAAAGGTATTGATATCTTAC
ATGTGGGAAAACAAGTTCTTTTCCCTCGGCCTGTTTGCTGGATACTATCA
AGATTTGCTGGGCCTTGGCGATGATATTATGGTACCGCTATTCTTTGCTG
AGATGCTTGCTCAGCATGATGCTACCTTAGTCGCATGGAGGGAAAAGAGG
CGCCATGACTATGTTCGTCCTGTTACGCTGATTCGCAAGTTGCTCAAAGG
GAAGAAGGTTCGTGCATGGAAGGGGCTTGAGGAAGGAGTTGGACTGGTCA
ATGCCGATGAATGGGAACCTGTTGTACCCATTCAACCGCACTCTGAGTAT
CCATCTGGCTCAGCTGTGATATGCACGGCGTCACTAGAAAATTTGCGCAT
CTTCCTTGAGACTCTTGTGTTGAAGGAGAACGGTACGATTCCTCCTTTTG
AAATGGACATTGTTCCAGGGCTTGTGCCAAACAGTCCGGTTGAAAAGACT
GTGAGGATTGCTTTCGATAGTTTAGAAGAAGCTGCACTTAGCTGTGGTGA
ATCTAGGCTTGATTCGGGTGTTCATTTTGAACCGTCTGTACCTGCTGGGC
ATCGTTTGGGAACTGGTATTGGCAAGGCAGCTTTTGCCCACGTCATGGAT
CTTATGCAGGGCAGGATACCGGATAACTGTGAGCGCTGCATCCGAACCTA
G

protein sequence of Ggra3714.t1

>Ggra3714.t1 ID=Ggra3714.t1|Name=Ggra3714.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=517bp
MEARCKLVITAIALTLITILPRIRAQEAQAAQGPSLADLLTISTNPPNEA
LAAFFPPSIFNAQTPLAIRYALVGSVAQYQIFAACHPVALSFFGDKLHIP
PRFCTNRDQKALIQAHMFYRVMASEFPIDAKPAERLLISRGLNPFDRSTN
TSTPVGWANAASNRLLQYFVTDGWNSQGDVSKRDYRQQYQDYTSYTPVNP
PHVPPHHLQFPLRWQPLTAPVDNRGLFGSQQHVVPQIGTNGKPLALSRQQ
FEQRRAPDLYDNPNRRYNLGRKDRKLAHRLMSNLFKRSSNLTEEKVLISY
MWENKFFSLGLFAGYYQDLLGLGDDIMVPLFFAEMLAQHDATLVAWREKR
RHDYVRPVTLIRKLLKGKKVRAWKGLEEGVGLVNADEWEPVVPIQPHSEY
PSGSAVICTASLENLRIFLETLVLKENGTIPPFEMDIVPGLVPNSPVEKT
VRIAFDSLEEAALSCGESRLDSGVHFEPSVPAGHRLGTGIGKAAFAHVMD
LMQGRIPDNCERCIRT*

mRNA from alignment at tig00000850_pilon:1176674..1178224-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3714.t1 ID=Ggra3714.t1|Name=Ggra3714.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1551bp|location=Sequence derived from alignment at tig00000850_pilon:1176674..1178224- (Gracilaria gracilis GNS1m male)
ATGGAAGCTCGATGCAAGCTAGTCATAACAGCCATCGCACTTACGCTAAT
CACCATTCTGCCTCGTATTCGAGCGCAGGAAGCGCAAGCCGCGCAAGGCC
CCTCTCTGGCCGATCTGTTGACCATATCCACCAACCCTCCCAACGAAGCT
CTGGCTGCGTTCTTTCCGCCTTCAATCTTTAACGCTCAAACGCCCTTAGC
AATTCGCTATGCTCTTGTCGGGTCTGTTGCGCAGTACCAAATATTTGCAG
CTTGTCATCCAGTTGCTCTTTCCTTCTTTGGAGATAAGCTGCATATCCCG
CCTCGCTTCTGTACCAACCGTGATCAAAAAGCACTGATTCAGGCGCACAT
GTTTTATCGCGTGATGGCCTCTGAGTTTCCTATTGACGCCAAGCCTGCAG
AGCGCCTTCTTATCAGCCGAGGATTGAATCCTTTTGATCGCTCCACCAAT
ACATCCACCCCGGTTGGCTGGGCAAACGCTGCCTCAAATCGCTTGCTTCA
GTACTTTGTCACTGATGGCTGGAATTCACAGGGCGATGTTTCGAAACGCG
ATTATAGACAGCAGTATCAGGACTATACGTCGTATACGCCTGTCAATCCG
CCGCATGTACCGCCGCATCATCTTCAGTTCCCGCTTCGTTGGCAACCGCT
CACTGCGCCAGTTGATAATCGCGGTCTATTCGGCAGCCAGCAACACGTCG
TGCCTCAGATTGGTACCAACGGAAAGCCGCTAGCTTTATCGCGCCAACAG
TTCGAGCAACGTCGTGCACCTGATCTGTACGACAACCCGAATCGTCGCTA
CAACCTTGGTCGAAAGGATAGAAAGCTGGCTCATCGTTTGATGAGCAATC
TTTTTAAACGCTCTTCAAACTTGACTGAGGAAAAGGTATTGATATCTTAC
ATGTGGGAAAACAAGTTCTTTTCCCTCGGCCTGTTTGCTGGATACTATCA
AGATTTGCTGGGCCTTGGCGATGATATTATGGTACCGCTATTCTTTGCTG
AGATGCTTGCTCAGCATGATGCTACCTTAGTCGCATGGAGGGAAAAGAGG
CGCCATGACTATGTTCGTCCTGTTACGCTGATTCGCAAGTTGCTCAAAGG
GAAGAAGGTTCGTGCATGGAAGGGGCTTGAGGAAGGAGTTGGACTGGTCA
ATGCCGATGAATGGGAACCTGTTGTACCCATTCAACCGCACTCTGAGTAT
CCATCTGGCTCAGCTGTGATATGCACGGCGTCACTAGAAAATTTGCGCAT
CTTCCTTGAGACTCTTGTGTTGAAGGAGAACGGTACGATTCCTCCTTTTG
AAATGGACATTGTTCCAGGGCTTGTGCCAAACAGTCCGGTTGAAAAGACT
GTGAGGATTGCTTTCGATAGTTTAGAAGAAGCTGCACTTAGCTGTGGTGA
ATCTAGGCTTGATTCGGGTGTTCATTTTGAACCGTCTGTACCTGCTGGGC
ATCGTTTGGGAACTGGTATTGGCAAGGCAGCTTTTGCCCACGTCATGGAT
CTTATGCAGGGCAGGATACCGGATAACTGTGAGCGCTGCATCCGAACCTA
G

Coding sequence (CDS) from alignment at tig00000850_pilon:1176674..1178224-

>Ggra3714.t1 ID=Ggra3714.t1|Name=Ggra3714.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1551bp|location=Sequence derived from alignment at tig00000850_pilon:1176674..1178224- (Gracilaria gracilis GNS1m male)
ATGGAAGCTCGATGCAAGCTAGTCATAACAGCCATCGCACTTACGCTAAT
CACCATTCTGCCTCGTATTCGAGCGCAGGAAGCGCAAGCCGCGCAAGGCC
CCTCTCTGGCCGATCTGTTGACCATATCCACCAACCCTCCCAACGAAGCT
CTGGCTGCGTTCTTTCCGCCTTCAATCTTTAACGCTCAAACGCCCTTAGC
AATTCGCTATGCTCTTGTCGGGTCTGTTGCGCAGTACCAAATATTTGCAG
CTTGTCATCCAGTTGCTCTTTCCTTCTTTGGAGATAAGCTGCATATCCCG
CCTCGCTTCTGTACCAACCGTGATCAAAAAGCACTGATTCAGGCGCACAT
GTTTTATCGCGTGATGGCCTCTGAGTTTCCTATTGACGCCAAGCCTGCAG
AGCGCCTTCTTATCAGCCGAGGATTGAATCCTTTTGATCGCTCCACCAAT
ACATCCACCCCGGTTGGCTGGGCAAACGCTGCCTCAAATCGCTTGCTTCA
GTACTTTGTCACTGATGGCTGGAATTCACAGGGCGATGTTTCGAAACGCG
ATTATAGACAGCAGTATCAGGACTATACGTCGTATACGCCTGTCAATCCG
CCGCATGTACCGCCGCATCATCTTCAGTTCCCGCTTCGTTGGCAACCGCT
CACTGCGCCAGTTGATAATCGCGGTCTATTCGGCAGCCAGCAACACGTCG
TGCCTCAGATTGGTACCAACGGAAAGCCGCTAGCTTTATCGCGCCAACAG
TTCGAGCAACGTCGTGCACCTGATCTGTACGACAACCCGAATCGTCGCTA
CAACCTTGGTCGAAAGGATAGAAAGCTGGCTCATCGTTTGATGAGCAATC
TTTTTAAACGCTCTTCAAACTTGACTGAGGAAAAGGTATTGATATCTTAC
ATGTGGGAAAACAAGTTCTTTTCCCTCGGCCTGTTTGCTGGATACTATCA
AGATTTGCTGGGCCTTGGCGATGATATTATGGTACCGCTATTCTTTGCTG
AGATGCTTGCTCAGCATGATGCTACCTTAGTCGCATGGAGGGAAAAGAGG
CGCCATGACTATGTTCGTCCTGTTACGCTGATTCGCAAGTTGCTCAAAGG
GAAGAAGGTTCGTGCATGGAAGGGGCTTGAGGAAGGAGTTGGACTGGTCA
ATGCCGATGAATGGGAACCTGTTGTACCCATTCAACCGCACTCTGAGTAT
CCATCTGGCTCAGCTGTGATATGCACGGCGTCACTAGAAAATTTGCGCAT
CTTCCTTGAGACTCTTGTGTTGAAGGAGAACGGTACGATTCCTCCTTTTG
AAATGGACATTGTTCCAGGGCTTGTGCCAAACAGTCCGGTTGAAAAGACT
GTGAGGATTGCTTTCGATAGTTTAGAAGAAGCTGCACTTAGCTGTGGTGA
ATCTAGGCTTGATTCGGGTGTTCATTTTGAACCGTCTGTACCTGCTGGGC
ATCGTTTGGGAACTGGTATTGGCAAGGCAGCTTTTGCCCACGTCATGGAT
CTTATGCAGGGCAGGATACCGGATAACTGTGAGCGCTGCATCCGAACCTA
G