Ggra3712.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3712.t1
Unique NameGgra3712.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length252
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1171788..1172543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMR255CT
Preferred nameIPP
PFAMsAPS_kinase,ATP-sulfurylase,PUA_2,Peptidase_M14,Pyrophosphatase
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00078,RC02809,RC02889
KEGG koko:K01507,ko:K13811
KEGG ReactionR00509,R00529,R04928,R04929
KEGG Pathwayko00190,ko00230,ko00261,ko00450,ko00920,ko01100,ko01120,ko01130,map00190,map00230,map00261,map00450,map00920,map01100,map01120,map01130
KEGG ModuleM00176
GOsGO:0000287,GO:0003674,GO:0003824,GO:0004427,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0006082,GO:0006793,GO:0008150,GO:0008152,GO:0009987,GO:0010035,GO:0010038,GO:0010876,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0019915,GO:0033036,GO:0042221,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046686,GO:0046872,GO:0050896,GO:0051179,GO:0051235,GO:0065007,GO:0065008,GO:0071344,GO:0071704
Evalue7.53e-92
EggNOG OGsCOG0221@1|root,KOG1626@2759|Eukaryota
EC2.7.1.25,2.7.7.4,3.6.1.1
Descriptioninorganic diphosphatase activity
COG categoryC
BiGG ReactioniJN746.PP_0538
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3712Ggra3712Gracilaria gracilis GNS1m malegenetig00000850_pilon 1171788..1172543 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3712.t1.stop1Ggra3712.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 1171788..1171790 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3712.t1.CDS1Ggra3712.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1171788..1172543 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3712.t1.exon1Ggra3712.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 1171788..1172543 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3712.t1.start1Ggra3712.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 1172541..1172543 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3712.t1Ggra3712.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 1171788..1172543 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3712.t1 ID=Ggra3712.t1|Name=Ggra3712.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=252bp
MHHQASTDVPSLQTQTVGESNTKGFRLFYRSSKDIQLSPWHDIPVYPDPS
NTSVVHFVNEIPRGTQAKMEIATDETGTPIKQDIKKGELRIYKYGPSLVN
YGAIPQTWEDPSSIHPELNFCGDGDPVDVCEIGDAAMPFGSVYKVKVLGC
LALLDEGEVDWKIIGINTADPKAGDVNDIDDVERVFPGKVHEVREWFRLY
KTAEGKGENEYGYGGEAKNSAFAQNVVTETHTSWADLRSGKIENEDELSL
K*
back to top

spliced messenger RNA

>Ggra3712.t1 ID=Ggra3712.t1|Name=Ggra3712.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=756bp|location=Sequence derived from alignment at tig00000850_pilon:1171788..1172543- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCATCAGGCTTCTACAGATGTTCCTTCGTTGCAGACCCAGACGGT
TGGAGAGTCAAACACAAAGGGCTTCCGTCTATTCTACCGATCGTCCAAAG
ATATTCAGTTATCGCCGTGGCATGATATCCCTGTTTATCCGGATCCATCT
AATACCTCAGTTGTTCATTTTGTGAATGAGATTCCTCGCGGAACACAGGC
GAAGATGGAGATCGCCACAGACGAGACTGGCACGCCCATTAAGCAAGACA
TCAAGAAGGGCGAGCTACGTATTTACAAGTACGGACCGTCACTTGTTAAC
TACGGTGCCATCCCACAGACATGGGAAGACCCCTCATCGATCCACCCCGA
ACTGAACTTTTGTGGAGACGGTGATCCTGTCGATGTCTGCGAAATCGGTG
ATGCAGCGATGCCATTTGGTTCTGTTTACAAGGTTAAAGTTTTGGGATGT
CTTGCTCTACTAGACGAGGGTGAGGTTGACTGGAAGATCATCGGCATCAA
CACTGCTGATCCAAAGGCTGGTGATGTCAATGACATTGATGATGTCGAAC
GTGTTTTCCCTGGCAAGGTGCACGAGGTTCGGGAGTGGTTCAGATTGTAC
AAAACTGCTGAAGGAAAGGGAGAGAACGAATATGGATACGGTGGGGAAGC
GAAGAACTCTGCATTTGCTCAGAATGTGGTTACTGAAACTCATACTAGTT
GGGCAGATCTGAGAAGTGGAAAGATCGAGAACGAGGATGAGCTGTCTCTG
AAATAG
back to top

protein sequence of Ggra3712.t1

>Ggra3712.t1 ID=Ggra3712.t1|Name=Ggra3712.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=252bp
MHHQASTDVPSLQTQTVGESNTKGFRLFYRSSKDIQLSPWHDIPVYPDPS
NTSVVHFVNEIPRGTQAKMEIATDETGTPIKQDIKKGELRIYKYGPSLVN
YGAIPQTWEDPSSIHPELNFCGDGDPVDVCEIGDAAMPFGSVYKVKVLGC
LALLDEGEVDWKIIGINTADPKAGDVNDIDDVERVFPGKVHEVREWFRLY
KTAEGKGENEYGYGGEAKNSAFAQNVVTETHTSWADLRSGKIENEDELSL
K*
back to top

mRNA from alignment at tig00000850_pilon:1171788..1172543-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3712.t1 ID=Ggra3712.t1|Name=Ggra3712.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=756bp|location=Sequence derived from alignment at tig00000850_pilon:1171788..1172543- (Gracilaria gracilis GNS1m male)
ATGCACCATCAGGCTTCTACAGATGTTCCTTCGTTGCAGACCCAGACGGT
TGGAGAGTCAAACACAAAGGGCTTCCGTCTATTCTACCGATCGTCCAAAG
ATATTCAGTTATCGCCGTGGCATGATATCCCTGTTTATCCGGATCCATCT
AATACCTCAGTTGTTCATTTTGTGAATGAGATTCCTCGCGGAACACAGGC
GAAGATGGAGATCGCCACAGACGAGACTGGCACGCCCATTAAGCAAGACA
TCAAGAAGGGCGAGCTACGTATTTACAAGTACGGACCGTCACTTGTTAAC
TACGGTGCCATCCCACAGACATGGGAAGACCCCTCATCGATCCACCCCGA
ACTGAACTTTTGTGGAGACGGTGATCCTGTCGATGTCTGCGAAATCGGTG
ATGCAGCGATGCCATTTGGTTCTGTTTACAAGGTTAAAGTTTTGGGATGT
CTTGCTCTACTAGACGAGGGTGAGGTTGACTGGAAGATCATCGGCATCAA
CACTGCTGATCCAAAGGCTGGTGATGTCAATGACATTGATGATGTCGAAC
GTGTTTTCCCTGGCAAGGTGCACGAGGTTCGGGAGTGGTTCAGATTGTAC
AAAACTGCTGAAGGAAAGGGAGAGAACGAATATGGATACGGTGGGGAAGC
GAAGAACTCTGCATTTGCTCAGAATGTGGTTACTGAAACTCATACTAGTT
GGGCAGATCTGAGAAGTGGAAAGATCGAGAACGAGGATGAGCTGTCTCTG
AAATAG
back to top

Coding sequence (CDS) from alignment at tig00000850_pilon:1171788..1172543-

>Ggra3712.t1 ID=Ggra3712.t1|Name=Ggra3712.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=756bp|location=Sequence derived from alignment at tig00000850_pilon:1171788..1172543- (Gracilaria gracilis GNS1m male)
ATGCACCATCAGGCTTCTACAGATGTTCCTTCGTTGCAGACCCAGACGGT
TGGAGAGTCAAACACAAAGGGCTTCCGTCTATTCTACCGATCGTCCAAAG
ATATTCAGTTATCGCCGTGGCATGATATCCCTGTTTATCCGGATCCATCT
AATACCTCAGTTGTTCATTTTGTGAATGAGATTCCTCGCGGAACACAGGC
GAAGATGGAGATCGCCACAGACGAGACTGGCACGCCCATTAAGCAAGACA
TCAAGAAGGGCGAGCTACGTATTTACAAGTACGGACCGTCACTTGTTAAC
TACGGTGCCATCCCACAGACATGGGAAGACCCCTCATCGATCCACCCCGA
ACTGAACTTTTGTGGAGACGGTGATCCTGTCGATGTCTGCGAAATCGGTG
ATGCAGCGATGCCATTTGGTTCTGTTTACAAGGTTAAAGTTTTGGGATGT
CTTGCTCTACTAGACGAGGGTGAGGTTGACTGGAAGATCATCGGCATCAA
CACTGCTGATCCAAAGGCTGGTGATGTCAATGACATTGATGATGTCGAAC
GTGTTTTCCCTGGCAAGGTGCACGAGGTTCGGGAGTGGTTCAGATTGTAC
AAAACTGCTGAAGGAAAGGGAGAGAACGAATATGGATACGGTGGGGAAGC
GAAGAACTCTGCATTTGCTCAGAATGTGGTTACTGAAACTCATACTAGTT
GGGCAGATCTGAGAAGTGGAAAGATCGAGAACGAGGATGAGCTGTCTCTG
AAATAG
back to top