Ggra3710.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3710.t1
Unique NameGgra3710.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length451
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1165597..1166949 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3710Ggra3710Gracilaria gracilis GNS1m malegenetig00000850_pilon 1165597..1166949 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3710.t1.stop1Ggra3710.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 1165597..1165599 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3710.t1.CDS1Ggra3710.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1165597..1166949 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3710.t1.exon1Ggra3710.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 1165597..1166949 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3710.t1.start1Ggra3710.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 1166947..1166949 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3710.t1Ggra3710.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 1165597..1166949 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3710.t1 ID=Ggra3710.t1|Name=Ggra3710.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=451bp
MAAPSLPSSTSVTSTSFHTPSSNASVARSTQTPSPPTLTTLKPFSLPLDK
QRPSPPLPSPTTPLSFTADPPTLRVPPPTPPSVGSDLTRSTPSPAPLIRP
RPARVRSDFSKVAPLSTRSSTLAAARLRSTSKGARRQRRAVSHMVSDISH
STDQRRRSHMGFRAPDLPDVVSEMWKNLNLVPYHNNQLNVIVLFTNAIRA
ELNDMRFLLCLMRDTTCSADSPRSLRNLNTDFELWFSRFSHFVHLIMCCV
QTKLFPLVEQFLNKRDVMTSRCIASTEVAGMSYIQAWKSTCSSLHMSISQ
LLQHMCTAENRVLLLTAKRRLRSNGNRVHLLASASESLAVLHRSFSKFVD
SLDMACERIVHLKASSPLCKQILDSFVHVVVNNGARDLPPLGWSACITFT
RWIESKKMRNEMVGRLARISKTSVLGRCLADQSHHAVVRLYRMVWAKRAG
*
back to top

spliced messenger RNA

>Ggra3710.t1 ID=Ggra3710.t1|Name=Ggra3710.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1353bp|location=Sequence derived from alignment at tig00000850_pilon:1165597..1166949- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCGCCTTCCCTTCCTTCTTCCACCAGCGTCACTTCCACGTCGTT
CCACACCCCTTCGTCGAACGCCTCCGTCGCGCGTTCGACCCAGACCCCTT
CACCTCCCACTCTCACCACGCTCAAGCCCTTCTCGCTGCCGCTTGACAAG
CAACGTCCGTCGCCGCCGCTTCCGTCCCCCACCACCCCGCTGTCCTTCAC
AGCTGATCCGCCCACGCTACGTGTACCGCCGCCCACCCCGCCCAGCGTGG
GTAGTGATCTCACGCGCTCCACGCCGTCGCCTGCCCCTCTCATCCGCCCG
CGTCCCGCGCGCGTTCGATCCGACTTCAGCAAGGTGGCGCCGCTTTCCAC
CCGCTCCTCTACCCTGGCCGCTGCTCGATTGCGGAGTACCAGCAAAGGCG
CCAGGAGACAGCGCCGTGCCGTTTCTCACATGGTGAGTGACATTTCGCAT
AGTACCGACCAAAGGCGTCGGTCACACATGGGCTTTCGCGCCCCGGACTT
GCCGGATGTGGTGTCCGAGATGTGGAAGAACTTGAACTTGGTGCCTTATC
ACAACAACCAGCTCAATGTGATTGTCTTGTTCACCAATGCCATTCGCGCC
GAGCTCAATGACATGAGGTTCTTGCTTTGTCTCATGAGGGATACTACATG
TTCTGCCGATTCTCCACGCTCACTTCGCAACCTCAACACCGATTTCGAGC
TCTGGTTTTCCAGATTTTCGCACTTTGTGCATCTCATCATGTGTTGTGTG
CAGACCAAATTGTTTCCACTCGTGGAACAATTTTTGAACAAACGAGATGT
GATGACTAGTCGATGCATCGCATCAACTGAAGTCGCGGGCATGTCGTACA
TTCAGGCGTGGAAGTCCACCTGCAGCTCGCTGCACATGTCCATCTCACAA
CTGCTTCAACACATGTGCACAGCTGAGAACCGCGTGCTGCTGTTGACCGC
GAAGCGACGACTGCGAAGTAACGGCAACCGAGTTCATCTACTCGCTTCGG
CCAGTGAATCCCTGGCCGTGCTACACCGTTCTTTCTCCAAGTTTGTGGAC
TCCTTGGACATGGCATGCGAGCGAATCGTACATCTCAAGGCGTCGTCTCC
CCTTTGCAAGCAGATTCTAGATTCTTTTGTTCATGTGGTGGTCAACAACG
GTGCAAGAGACTTGCCGCCTTTGGGATGGAGCGCTTGTATTACTTTCACT
AGATGGATTGAGTCTAAAAAGATGAGGAATGAAATGGTTGGCAGATTGGC
TAGGATATCTAAAACCTCTGTGCTAGGTCGATGTCTTGCCGACCAGTCGC
ACCACGCAGTGGTTCGACTCTACCGAATGGTGTGGGCGAAAAGAGCGGGA
TGA
back to top

protein sequence of Ggra3710.t1

>Ggra3710.t1 ID=Ggra3710.t1|Name=Ggra3710.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=451bp
MAAPSLPSSTSVTSTSFHTPSSNASVARSTQTPSPPTLTTLKPFSLPLDK
QRPSPPLPSPTTPLSFTADPPTLRVPPPTPPSVGSDLTRSTPSPAPLIRP
RPARVRSDFSKVAPLSTRSSTLAAARLRSTSKGARRQRRAVSHMVSDISH
STDQRRRSHMGFRAPDLPDVVSEMWKNLNLVPYHNNQLNVIVLFTNAIRA
ELNDMRFLLCLMRDTTCSADSPRSLRNLNTDFELWFSRFSHFVHLIMCCV
QTKLFPLVEQFLNKRDVMTSRCIASTEVAGMSYIQAWKSTCSSLHMSISQ
LLQHMCTAENRVLLLTAKRRLRSNGNRVHLLASASESLAVLHRSFSKFVD
SLDMACERIVHLKASSPLCKQILDSFVHVVVNNGARDLPPLGWSACITFT
RWIESKKMRNEMVGRLARISKTSVLGRCLADQSHHAVVRLYRMVWAKRAG
*
back to top

mRNA from alignment at tig00000850_pilon:1165597..1166949-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3710.t1 ID=Ggra3710.t1|Name=Ggra3710.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1353bp|location=Sequence derived from alignment at tig00000850_pilon:1165597..1166949- (Gracilaria gracilis GNS1m male)
ATGGCCGCGCCTTCCCTTCCTTCTTCCACCAGCGTCACTTCCACGTCGTT
CCACACCCCTTCGTCGAACGCCTCCGTCGCGCGTTCGACCCAGACCCCTT
CACCTCCCACTCTCACCACGCTCAAGCCCTTCTCGCTGCCGCTTGACAAG
CAACGTCCGTCGCCGCCGCTTCCGTCCCCCACCACCCCGCTGTCCTTCAC
AGCTGATCCGCCCACGCTACGTGTACCGCCGCCCACCCCGCCCAGCGTGG
GTAGTGATCTCACGCGCTCCACGCCGTCGCCTGCCCCTCTCATCCGCCCG
CGTCCCGCGCGCGTTCGATCCGACTTCAGCAAGGTGGCGCCGCTTTCCAC
CCGCTCCTCTACCCTGGCCGCTGCTCGATTGCGGAGTACCAGCAAAGGCG
CCAGGAGACAGCGCCGTGCCGTTTCTCACATGGTGAGTGACATTTCGCAT
AGTACCGACCAAAGGCGTCGGTCACACATGGGCTTTCGCGCCCCGGACTT
GCCGGATGTGGTGTCCGAGATGTGGAAGAACTTGAACTTGGTGCCTTATC
ACAACAACCAGCTCAATGTGATTGTCTTGTTCACCAATGCCATTCGCGCC
GAGCTCAATGACATGAGGTTCTTGCTTTGTCTCATGAGGGATACTACATG
TTCTGCCGATTCTCCACGCTCACTTCGCAACCTCAACACCGATTTCGAGC
TCTGGTTTTCCAGATTTTCGCACTTTGTGCATCTCATCATGTGTTGTGTG
CAGACCAAATTGTTTCCACTCGTGGAACAATTTTTGAACAAACGAGATGT
GATGACTAGTCGATGCATCGCATCAACTGAAGTCGCGGGCATGTCGTACA
TTCAGGCGTGGAAGTCCACCTGCAGCTCGCTGCACATGTCCATCTCACAA
CTGCTTCAACACATGTGCACAGCTGAGAACCGCGTGCTGCTGTTGACCGC
GAAGCGACGACTGCGAAGTAACGGCAACCGAGTTCATCTACTCGCTTCGG
CCAGTGAATCCCTGGCCGTGCTACACCGTTCTTTCTCCAAGTTTGTGGAC
TCCTTGGACATGGCATGCGAGCGAATCGTACATCTCAAGGCGTCGTCTCC
CCTTTGCAAGCAGATTCTAGATTCTTTTGTTCATGTGGTGGTCAACAACG
GTGCAAGAGACTTGCCGCCTTTGGGATGGAGCGCTTGTATTACTTTCACT
AGATGGATTGAGTCTAAAAAGATGAGGAATGAAATGGTTGGCAGATTGGC
TAGGATATCTAAAACCTCTGTGCTAGGTCGATGTCTTGCCGACCAGTCGC
ACCACGCAGTGGTTCGACTCTACCGAATGGTGTGGGCGAAAAGAGCGGGA
TGA
back to top

Coding sequence (CDS) from alignment at tig00000850_pilon:1165597..1166949-

>Ggra3710.t1 ID=Ggra3710.t1|Name=Ggra3710.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1353bp|location=Sequence derived from alignment at tig00000850_pilon:1165597..1166949- (Gracilaria gracilis GNS1m male)
ATGGCCGCGCCTTCCCTTCCTTCTTCCACCAGCGTCACTTCCACGTCGTT
CCACACCCCTTCGTCGAACGCCTCCGTCGCGCGTTCGACCCAGACCCCTT
CACCTCCCACTCTCACCACGCTCAAGCCCTTCTCGCTGCCGCTTGACAAG
CAACGTCCGTCGCCGCCGCTTCCGTCCCCCACCACCCCGCTGTCCTTCAC
AGCTGATCCGCCCACGCTACGTGTACCGCCGCCCACCCCGCCCAGCGTGG
GTAGTGATCTCACGCGCTCCACGCCGTCGCCTGCCCCTCTCATCCGCCCG
CGTCCCGCGCGCGTTCGATCCGACTTCAGCAAGGTGGCGCCGCTTTCCAC
CCGCTCCTCTACCCTGGCCGCTGCTCGATTGCGGAGTACCAGCAAAGGCG
CCAGGAGACAGCGCCGTGCCGTTTCTCACATGGTGAGTGACATTTCGCAT
AGTACCGACCAAAGGCGTCGGTCACACATGGGCTTTCGCGCCCCGGACTT
GCCGGATGTGGTGTCCGAGATGTGGAAGAACTTGAACTTGGTGCCTTATC
ACAACAACCAGCTCAATGTGATTGTCTTGTTCACCAATGCCATTCGCGCC
GAGCTCAATGACATGAGGTTCTTGCTTTGTCTCATGAGGGATACTACATG
TTCTGCCGATTCTCCACGCTCACTTCGCAACCTCAACACCGATTTCGAGC
TCTGGTTTTCCAGATTTTCGCACTTTGTGCATCTCATCATGTGTTGTGTG
CAGACCAAATTGTTTCCACTCGTGGAACAATTTTTGAACAAACGAGATGT
GATGACTAGTCGATGCATCGCATCAACTGAAGTCGCGGGCATGTCGTACA
TTCAGGCGTGGAAGTCCACCTGCAGCTCGCTGCACATGTCCATCTCACAA
CTGCTTCAACACATGTGCACAGCTGAGAACCGCGTGCTGCTGTTGACCGC
GAAGCGACGACTGCGAAGTAACGGCAACCGAGTTCATCTACTCGCTTCGG
CCAGTGAATCCCTGGCCGTGCTACACCGTTCTTTCTCCAAGTTTGTGGAC
TCCTTGGACATGGCATGCGAGCGAATCGTACATCTCAAGGCGTCGTCTCC
CCTTTGCAAGCAGATTCTAGATTCTTTTGTTCATGTGGTGGTCAACAACG
GTGCAAGAGACTTGCCGCCTTTGGGATGGAGCGCTTGTATTACTTTCACT
AGATGGATTGAGTCTAAAAAGATGAGGAATGAAATGGTTGGCAGATTGGC
TAGGATATCTAAAACCTCTGTGCTAGGTCGATGTCTTGCCGACCAGTCGC
ACCACGCAGTGGTTCGACTCTACCGAATGGTGTGGGCGAAAAGAGCGGGA
TGA
back to top