Ggra371.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra371.t1
Unique NameGgra371.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length253
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000950_piloncontigtig00000950_pilon:187643..188401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMS287CT
Preferred nameGLTPD2
PFAMsGLTP
Max annot lvl2759|Eukaryota
KEGG koko:K08051
GOsGO:0001101,GO:0001817,GO:0001818,GO:0002376,GO:0002791,GO:0002792,GO:0003674,GO:0005215,GO:0005319,GO:0005488,GO:0005543,GO:0005548,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006629,GO:0006643,GO:0006664,GO:0006665,GO:0006687,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006869,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0008152,GO:0008219,GO:0008289,GO:0008324,GO:0008519,GO:0009605,GO:0009607,GO:0009617,GO:0009719,GO:0009725,GO:0009751,GO:0009814,GO:0009816,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010033,GO:0010175,GO:0010506,GO:0010507,GO:0010876,GO:0014070,GO:0015075,GO:0015101,GO:0015166,GO:0015318,GO:0015665,GO:0015695,GO:0015696,GO:0015711,GO:0015748,GO:0015791,GO:0015850,GO:0015914,GO:0016043,GO:0019222,GO:0022857,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031333,GO:0032651,GO:0032652,GO:0032691,GO:0032692,GO:0032879,GO:0032880,GO:0033036,GO:0033218,GO:0034220,GO:0035620,GO:0035627,GO:0042221,GO:0042493,GO:0042742,GO:0042886,GO:0043167,GO:0043168,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0044087,GO:0044237,GO:0044238,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0045087,GO:0046624,GO:0046625,GO:0046677,GO:0048519,GO:0048523,GO:0050704,GO:0050706,GO:0050707,GO:0050708,GO:0050709,GO:0050710,GO:0050711,GO:0050713,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051048,GO:0051049,GO:0051051,GO:0051128,GO:0051129,GO:0051179,GO:0051223,GO:0051224,GO:0051234,GO:0051239,GO:0051241,GO:0051704,GO:0051707,GO:0051861,GO:0055085,GO:0061024,GO:0065007,GO:0070201,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072488,GO:0090087,GO:0097001,GO:0097367,GO:0098542,GO:0098655,GO:0120009,GO:0120013,GO:1900225,GO:1900226,GO:1901135,GO:1901564,GO:1901618,GO:1901700,GO:1902387,GO:1902388,GO:1902389,GO:1903509,GO:1903530,GO:1903531,GO:1904950
Evalue4.02e-24
EggNOG OGsKOG4189@1|root,KOG4189@2759|Eukaryota
Descriptionceramide 1-phosphate transporter activity
COG categoryE
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra371Ggra371Gracilaria gracilis GNS1m malegenetig00000950_pilon 187643..188401 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra371.t1.stop1Ggra371.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000950_pilon 187643..187645 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra371.t1.CDS1Ggra371.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000950_pilon 187643..188401 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra371.t1.exon1Ggra371.t1.exon1Gracilaria gracilis GNS1m maleexontig00000950_pilon 187643..188401 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra371.t1.start1Ggra371.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000950_pilon 188399..188401 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra371.t1Ggra371.t1Gracilaria gracilis GNS1m malepolypeptidetig00000950_pilon 187643..188401 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra371.t1 ID=Ggra371.t1|Name=Ggra371.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=253bp
MDYLRSRALPGVRADSNPSAGDGVAVEQPVGAMFDFEQMTCAFEACHTHF
LTTNSTLPTTQLFIAAMQQLCHLFDTLGAAFSFVKSDIESKLIVLKRFQS
TQSAHFSSLHAGVQHELRNDATCATGFVYEQSPSFARTLLRLMWALKFTD
RLLESLGRAFDDGLQLSANHRTLRHAVATAYDAALAQHHSWTIRKTVKGA
CLLLPSKEAFMKRIGVRKEDQQLYLKRLGNSMSPLVNRMYDYYEDFDLHG
LP*
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spliced messenger RNA

>Ggra371.t1 ID=Ggra371.t1|Name=Ggra371.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=759bp|location=Sequence derived from alignment at tig00000950_pilon:187643..188401- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTATCTGCGTTCGCGCGCGTTGCCCGGCGTGCGCGCAGACAGCAA
CCCGTCCGCCGGCGACGGCGTCGCGGTGGAGCAGCCGGTCGGCGCCATGT
TCGACTTTGAGCAAATGACGTGTGCGTTCGAAGCGTGCCACACGCATTTC
CTCACCACCAACAGCACGCTGCCGACCACGCAGCTGTTCATCGCCGCCAT
GCAGCAGCTGTGCCACCTGTTCGACACGCTGGGCGCGGCGTTCTCGTTCG
TCAAGTCGGACATTGAGTCCAAGCTCATCGTGCTCAAGCGCTTCCAGAGC
ACGCAGAGTGCGCACTTTTCCAGCCTGCACGCCGGCGTGCAGCACGAGCT
GCGCAACGACGCCACGTGCGCCACGGGCTTTGTGTACGAGCAGTCGCCCA
GCTTTGCGCGCACGCTGCTGCGCTTGATGTGGGCGCTCAAGTTTACGGAC
CGGCTGTTGGAATCGCTTGGCAGGGCGTTTGACGACGGCTTGCAACTGAG
CGCCAACCATCGCACGTTGAGACATGCGGTGGCGACGGCGTATGACGCGG
CGCTGGCGCAGCATCACTCGTGGACGATTCGCAAGACGGTGAAGGGCGCG
TGCTTGCTGCTGCCGAGCAAGGAGGCTTTCATGAAGCGTATTGGGGTGAG
GAAGGAGGACCAGCAGCTGTATTTGAAGAGACTGGGCAATTCGATGTCGC
CGCTTGTGAATCGCATGTATGATTACTATGAGGATTTTGACTTGCACGGC
TTGCCGTGA
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protein sequence of Ggra371.t1

>Ggra371.t1 ID=Ggra371.t1|Name=Ggra371.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=253bp
MDYLRSRALPGVRADSNPSAGDGVAVEQPVGAMFDFEQMTCAFEACHTHF
LTTNSTLPTTQLFIAAMQQLCHLFDTLGAAFSFVKSDIESKLIVLKRFQS
TQSAHFSSLHAGVQHELRNDATCATGFVYEQSPSFARTLLRLMWALKFTD
RLLESLGRAFDDGLQLSANHRTLRHAVATAYDAALAQHHSWTIRKTVKGA
CLLLPSKEAFMKRIGVRKEDQQLYLKRLGNSMSPLVNRMYDYYEDFDLHG
LP*
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mRNA from alignment at tig00000950_pilon:187643..188401-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra371.t1 ID=Ggra371.t1|Name=Ggra371.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=759bp|location=Sequence derived from alignment at tig00000950_pilon:187643..188401- (Gracilaria gracilis GNS1m male)
ATGGATTATCTGCGTTCGCGCGCGTTGCCCGGCGTGCGCGCAGACAGCAA
CCCGTCCGCCGGCGACGGCGTCGCGGTGGAGCAGCCGGTCGGCGCCATGT
TCGACTTTGAGCAAATGACGTGTGCGTTCGAAGCGTGCCACACGCATTTC
CTCACCACCAACAGCACGCTGCCGACCACGCAGCTGTTCATCGCCGCCAT
GCAGCAGCTGTGCCACCTGTTCGACACGCTGGGCGCGGCGTTCTCGTTCG
TCAAGTCGGACATTGAGTCCAAGCTCATCGTGCTCAAGCGCTTCCAGAGC
ACGCAGAGTGCGCACTTTTCCAGCCTGCACGCCGGCGTGCAGCACGAGCT
GCGCAACGACGCCACGTGCGCCACGGGCTTTGTGTACGAGCAGTCGCCCA
GCTTTGCGCGCACGCTGCTGCGCTTGATGTGGGCGCTCAAGTTTACGGAC
CGGCTGTTGGAATCGCTTGGCAGGGCGTTTGACGACGGCTTGCAACTGAG
CGCCAACCATCGCACGTTGAGACATGCGGTGGCGACGGCGTATGACGCGG
CGCTGGCGCAGCATCACTCGTGGACGATTCGCAAGACGGTGAAGGGCGCG
TGCTTGCTGCTGCCGAGCAAGGAGGCTTTCATGAAGCGTATTGGGGTGAG
GAAGGAGGACCAGCAGCTGTATTTGAAGAGACTGGGCAATTCGATGTCGC
CGCTTGTGAATCGCATGTATGATTACTATGAGGATTTTGACTTGCACGGC
TTGCCGTGA
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Coding sequence (CDS) from alignment at tig00000950_pilon:187643..188401-

>Ggra371.t1 ID=Ggra371.t1|Name=Ggra371.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=759bp|location=Sequence derived from alignment at tig00000950_pilon:187643..188401- (Gracilaria gracilis GNS1m male)
ATGGATTATCTGCGTTCGCGCGCGTTGCCCGGCGTGCGCGCAGACAGCAA
CCCGTCCGCCGGCGACGGCGTCGCGGTGGAGCAGCCGGTCGGCGCCATGT
TCGACTTTGAGCAAATGACGTGTGCGTTCGAAGCGTGCCACACGCATTTC
CTCACCACCAACAGCACGCTGCCGACCACGCAGCTGTTCATCGCCGCCAT
GCAGCAGCTGTGCCACCTGTTCGACACGCTGGGCGCGGCGTTCTCGTTCG
TCAAGTCGGACATTGAGTCCAAGCTCATCGTGCTCAAGCGCTTCCAGAGC
ACGCAGAGTGCGCACTTTTCCAGCCTGCACGCCGGCGTGCAGCACGAGCT
GCGCAACGACGCCACGTGCGCCACGGGCTTTGTGTACGAGCAGTCGCCCA
GCTTTGCGCGCACGCTGCTGCGCTTGATGTGGGCGCTCAAGTTTACGGAC
CGGCTGTTGGAATCGCTTGGCAGGGCGTTTGACGACGGCTTGCAACTGAG
CGCCAACCATCGCACGTTGAGACATGCGGTGGCGACGGCGTATGACGCGG
CGCTGGCGCAGCATCACTCGTGGACGATTCGCAAGACGGTGAAGGGCGCG
TGCTTGCTGCTGCCGAGCAAGGAGGCTTTCATGAAGCGTATTGGGGTGAG
GAAGGAGGACCAGCAGCTGTATTTGAAGAGACTGGGCAATTCGATGTCGC
CGCTTGTGAATCGCATGTATGATTACTATGAGGATTTTGACTTGCACGGC
TTGCCGTGA
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