Ggra3706.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3706.t1
Unique Name	Ggra3706.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	541

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000850_pilon	contig	tig00000850_pilon:1150302..1151924 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	373994.Riv7116_2454
PFAMs	Glyco_transf_11
Max annot lvl	1117\|Cyanobacteria
Evalue	4.97e-75
EggNOG OGs	COG0438@1\|root,COG0438@2\|Bacteria,1GRM3@1117\|Cyanobacteria,1HRYZ@1161\|Nostocales
Description	PFAM Glycosyl transferase family 11
COG category	M

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3706	Ggra3706	Gracilaria gracilis GNS1m male	gene	tig00000850_pilon 1150302..1151924 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3706.t1.stop1	Ggra3706.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000850_pilon 1150302..1150304 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3706.t1.CDS1	Ggra3706.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000850_pilon 1150302..1151924 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3706.t1.exon1	Ggra3706.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000850_pilon 1150302..1151924 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3706.t1.start1	Ggra3706.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000850_pilon 1151922..1151924 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3706.t1	Ggra3706.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000850_pilon 1150302..1151924 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000850_pilon:1150302..1151924-
coding sequence from alignment at tig00000850_pilon:1150302..1151924-

mRNA sequence

>Ggra3706.t1 ID=Ggra3706.t1|Name=Ggra3706.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=541bp
MALKSGKRSLPPLPPPEPKRSRKAVAADCTELADLLLAHARHTDAQVPLD
SFSSKDFSPRLPQLLSNVHAYLTPPSSQLPLPGKTLSSFVDAQETTDAVV
PSILHETPRTPRRVNFVRDTAFQAVPKPKPQPKVVNASAYKAETEIAISR
IFQLGTVSSVRDPTIPADAPYNGPSTLTMTAFGELGRFGNQVLQYLFLRT
YAKRHNISQIQLPPWVGAGLFGLEDAPVQRALPPVIEFRDTLANSTFTTD
LLDYVKSANPKFNVSELSPSSLDLGAAADENRVVNVDVWGWFQWHTRHFA
PYKSMIQDIFTPVPQIKTHFEKVFSEQLRYRGGKKHTVVGLHLRMGDYKN
IAASSFGYCAPTEWYLNWLEKVWDTLENPILFVASDDLNAVVRDFAAYKP
FTADDIGMKMPEEMKHLKAGFFPDWFGLTECDVLAISNSTFSFSACLMNQ
REGAQFYRAHYRGVMEEMDPWNADAIVHRDMSKAGIAAALETLQVVYNTQ
GSRGLAKNLLYELPYYGLRSAVMKAVLWKQARDKLAAVSA*

spliced messenger RNA

>Ggra3706.t1 ID=Ggra3706.t1|Name=Ggra3706.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1623bp|location=Sequence derived from alignment at tig00000850_pilon:1150302..1151924- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCTCAAATCCGGGAAACGTTCTCTGCCGCCGCTGCCTCCTCCAGA
GCCGAAGCGCTCTCGCAAAGCCGTAGCCGCCGATTGTACCGAACTTGCCG
ATCTCCTCCTGGCTCACGCGCGTCACACTGACGCTCAGGTGCCTCTGGAT
TCTTTCTCAAGCAAGGACTTTTCTCCTCGTCTTCCGCAGCTTCTGTCGAA
CGTCCATGCCTACCTGACCCCGCCTTCGTCGCAGTTACCTCTACCCGGCA
AGACACTCTCGTCGTTTGTGGACGCCCAGGAAACCACTGATGCAGTTGTG
CCTTCAATTCTTCACGAGACTCCTCGTACGCCCCGTCGTGTCAACTTCGT
GCGCGACACGGCATTCCAGGCGGTGCCGAAGCCCAAGCCGCAGCCCAAGG
TTGTGAATGCCTCGGCGTACAAAGCTGAGACGGAGATTGCTATCTCTCGA
ATCTTCCAGCTTGGTACTGTGTCCTCTGTTCGTGATCCCACCATTCCAGC
TGACGCCCCGTATAACGGCCCGTCGACGCTCACCATGACCGCGTTTGGGG
AGCTCGGTCGCTTTGGTAATCAGGTGTTGCAGTATCTCTTTCTTCGTACT
TATGCGAAGCGTCATAACATCTCACAGATCCAGCTTCCGCCGTGGGTTGG
TGCTGGTCTGTTCGGACTAGAAGACGCTCCGGTACAAAGGGCACTTCCCC
CGGTGATTGAATTCCGTGACACGTTGGCTAATTCTACCTTCACCACGGAC
CTGCTCGACTACGTGAAGAGCGCCAACCCGAAGTTCAATGTAAGCGAGTT
GAGTCCGTCCAGTCTTGATCTGGGCGCGGCTGCTGATGAGAATCGCGTGG
TGAACGTGGACGTGTGGGGATGGTTCCAGTGGCATACTAGACATTTTGCG
CCATACAAGAGTATGATTCAAGACATCTTCACGCCTGTACCGCAAATCAA
GACGCATTTTGAAAAGGTTTTCTCCGAGCAGCTGCGCTACCGCGGCGGAA
AGAAGCACACTGTGGTCGGACTTCACCTGCGAATGGGAGACTACAAGAAC
ATTGCGGCTAGTTCGTTCGGATACTGTGCGCCTACTGAGTGGTACCTCAA
TTGGCTGGAAAAGGTGTGGGATACGCTGGAGAACCCAATTCTGTTCGTGG
CGTCAGATGATCTGAATGCGGTAGTGAGAGACTTTGCGGCATACAAGCCG
TTCACCGCAGATGACATCGGCATGAAGATGCCAGAAGAGATGAAGCACCT
GAAGGCGGGCTTTTTCCCTGATTGGTTTGGACTGACGGAGTGCGATGTGC
TTGCGATCTCCAATTCCACATTCAGCTTTTCAGCGTGCTTGATGAATCAG
AGGGAGGGCGCGCAGTTCTACAGGGCGCATTACCGTGGTGTGATGGAGGA
AATGGATCCGTGGAACGCGGATGCGATTGTGCATCGCGACATGAGTAAGG
CGGGTATTGCAGCGGCTTTAGAGACGTTGCAGGTTGTGTACAACACGCAG
GGATCGCGTGGATTGGCGAAGAACTTGCTGTATGAACTGCCGTATTATGG
ACTGCGGTCGGCAGTGATGAAGGCGGTGTTGTGGAAACAGGCGCGGGACA
AACTGGCGGCTGTTTCTGCGTGA

protein sequence of Ggra3706.t1

>Ggra3706.t1 ID=Ggra3706.t1|Name=Ggra3706.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=541bp
MALKSGKRSLPPLPPPEPKRSRKAVAADCTELADLLLAHARHTDAQVPLD
SFSSKDFSPRLPQLLSNVHAYLTPPSSQLPLPGKTLSSFVDAQETTDAVV
PSILHETPRTPRRVNFVRDTAFQAVPKPKPQPKVVNASAYKAETEIAISR
IFQLGTVSSVRDPTIPADAPYNGPSTLTMTAFGELGRFGNQVLQYLFLRT
YAKRHNISQIQLPPWVGAGLFGLEDAPVQRALPPVIEFRDTLANSTFTTD
LLDYVKSANPKFNVSELSPSSLDLGAAADENRVVNVDVWGWFQWHTRHFA
PYKSMIQDIFTPVPQIKTHFEKVFSEQLRYRGGKKHTVVGLHLRMGDYKN
IAASSFGYCAPTEWYLNWLEKVWDTLENPILFVASDDLNAVVRDFAAYKP
FTADDIGMKMPEEMKHLKAGFFPDWFGLTECDVLAISNSTFSFSACLMNQ
REGAQFYRAHYRGVMEEMDPWNADAIVHRDMSKAGIAAALETLQVVYNTQ
GSRGLAKNLLYELPYYGLRSAVMKAVLWKQARDKLAAVSA*

mRNA from alignment at tig00000850_pilon:1150302..1151924-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3706.t1 ID=Ggra3706.t1|Name=Ggra3706.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1623bp|location=Sequence derived from alignment at tig00000850_pilon:1150302..1151924- (Gracilaria gracilis GNS1m male)
ATGGCTCTCAAATCCGGGAAACGTTCTCTGCCGCCGCTGCCTCCTCCAGA
GCCGAAGCGCTCTCGCAAAGCCGTAGCCGCCGATTGTACCGAACTTGCCG
ATCTCCTCCTGGCTCACGCGCGTCACACTGACGCTCAGGTGCCTCTGGAT
TCTTTCTCAAGCAAGGACTTTTCTCCTCGTCTTCCGCAGCTTCTGTCGAA
CGTCCATGCCTACCTGACCCCGCCTTCGTCGCAGTTACCTCTACCCGGCA
AGACACTCTCGTCGTTTGTGGACGCCCAGGAAACCACTGATGCAGTTGTG
CCTTCAATTCTTCACGAGACTCCTCGTACGCCCCGTCGTGTCAACTTCGT
GCGCGACACGGCATTCCAGGCGGTGCCGAAGCCCAAGCCGCAGCCCAAGG
TTGTGAATGCCTCGGCGTACAAAGCTGAGACGGAGATTGCTATCTCTCGA
ATCTTCCAGCTTGGTACTGTGTCCTCTGTTCGTGATCCCACCATTCCAGC
TGACGCCCCGTATAACGGCCCGTCGACGCTCACCATGACCGCGTTTGGGG
AGCTCGGTCGCTTTGGTAATCAGGTGTTGCAGTATCTCTTTCTTCGTACT
TATGCGAAGCGTCATAACATCTCACAGATCCAGCTTCCGCCGTGGGTTGG
TGCTGGTCTGTTCGGACTAGAAGACGCTCCGGTACAAAGGGCACTTCCCC
CGGTGATTGAATTCCGTGACACGTTGGCTAATTCTACCTTCACCACGGAC
CTGCTCGACTACGTGAAGAGCGCCAACCCGAAGTTCAATGTAAGCGAGTT
GAGTCCGTCCAGTCTTGATCTGGGCGCGGCTGCTGATGAGAATCGCGTGG
TGAACGTGGACGTGTGGGGATGGTTCCAGTGGCATACTAGACATTTTGCG
CCATACAAGAGTATGATTCAAGACATCTTCACGCCTGTACCGCAAATCAA
GACGCATTTTGAAAAGGTTTTCTCCGAGCAGCTGCGCTACCGCGGCGGAA
AGAAGCACACTGTGGTCGGACTTCACCTGCGAATGGGAGACTACAAGAAC
ATTGCGGCTAGTTCGTTCGGATACTGTGCGCCTACTGAGTGGTACCTCAA
TTGGCTGGAAAAGGTGTGGGATACGCTGGAGAACCCAATTCTGTTCGTGG
CGTCAGATGATCTGAATGCGGTAGTGAGAGACTTTGCGGCATACAAGCCG
TTCACCGCAGATGACATCGGCATGAAGATGCCAGAAGAGATGAAGCACCT
GAAGGCGGGCTTTTTCCCTGATTGGTTTGGACTGACGGAGTGCGATGTGC
TTGCGATCTCCAATTCCACATTCAGCTTTTCAGCGTGCTTGATGAATCAG
AGGGAGGGCGCGCAGTTCTACAGGGCGCATTACCGTGGTGTGATGGAGGA
AATGGATCCGTGGAACGCGGATGCGATTGTGCATCGCGACATGAGTAAGG
CGGGTATTGCAGCGGCTTTAGAGACGTTGCAGGTTGTGTACAACACGCAG
GGATCGCGTGGATTGGCGAAGAACTTGCTGTATGAACTGCCGTATTATGG
ACTGCGGTCGGCAGTGATGAAGGCGGTGTTGTGGAAACAGGCGCGGGACA
AACTGGCGGCTGTTTCTGCGTGA

Coding sequence (CDS) from alignment at tig00000850_pilon:1150302..1151924-

>Ggra3706.t1 ID=Ggra3706.t1|Name=Ggra3706.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1623bp|location=Sequence derived from alignment at tig00000850_pilon:1150302..1151924- (Gracilaria gracilis GNS1m male)
ATGGCTCTCAAATCCGGGAAACGTTCTCTGCCGCCGCTGCCTCCTCCAGA
GCCGAAGCGCTCTCGCAAAGCCGTAGCCGCCGATTGTACCGAACTTGCCG
ATCTCCTCCTGGCTCACGCGCGTCACACTGACGCTCAGGTGCCTCTGGAT
TCTTTCTCAAGCAAGGACTTTTCTCCTCGTCTTCCGCAGCTTCTGTCGAA
CGTCCATGCCTACCTGACCCCGCCTTCGTCGCAGTTACCTCTACCCGGCA
AGACACTCTCGTCGTTTGTGGACGCCCAGGAAACCACTGATGCAGTTGTG
CCTTCAATTCTTCACGAGACTCCTCGTACGCCCCGTCGTGTCAACTTCGT
GCGCGACACGGCATTCCAGGCGGTGCCGAAGCCCAAGCCGCAGCCCAAGG
TTGTGAATGCCTCGGCGTACAAAGCTGAGACGGAGATTGCTATCTCTCGA
ATCTTCCAGCTTGGTACTGTGTCCTCTGTTCGTGATCCCACCATTCCAGC
TGACGCCCCGTATAACGGCCCGTCGACGCTCACCATGACCGCGTTTGGGG
AGCTCGGTCGCTTTGGTAATCAGGTGTTGCAGTATCTCTTTCTTCGTACT
TATGCGAAGCGTCATAACATCTCACAGATCCAGCTTCCGCCGTGGGTTGG
TGCTGGTCTGTTCGGACTAGAAGACGCTCCGGTACAAAGGGCACTTCCCC
CGGTGATTGAATTCCGTGACACGTTGGCTAATTCTACCTTCACCACGGAC
CTGCTCGACTACGTGAAGAGCGCCAACCCGAAGTTCAATGTAAGCGAGTT
GAGTCCGTCCAGTCTTGATCTGGGCGCGGCTGCTGATGAGAATCGCGTGG
TGAACGTGGACGTGTGGGGATGGTTCCAGTGGCATACTAGACATTTTGCG
CCATACAAGAGTATGATTCAAGACATCTTCACGCCTGTACCGCAAATCAA
GACGCATTTTGAAAAGGTTTTCTCCGAGCAGCTGCGCTACCGCGGCGGAA
AGAAGCACACTGTGGTCGGACTTCACCTGCGAATGGGAGACTACAAGAAC
ATTGCGGCTAGTTCGTTCGGATACTGTGCGCCTACTGAGTGGTACCTCAA
TTGGCTGGAAAAGGTGTGGGATACGCTGGAGAACCCAATTCTGTTCGTGG
CGTCAGATGATCTGAATGCGGTAGTGAGAGACTTTGCGGCATACAAGCCG
TTCACCGCAGATGACATCGGCATGAAGATGCCAGAAGAGATGAAGCACCT
GAAGGCGGGCTTTTTCCCTGATTGGTTTGGACTGACGGAGTGCGATGTGC
TTGCGATCTCCAATTCCACATTCAGCTTTTCAGCGTGCTTGATGAATCAG
AGGGAGGGCGCGCAGTTCTACAGGGCGCATTACCGTGGTGTGATGGAGGA
AATGGATCCGTGGAACGCGGATGCGATTGTGCATCGCGACATGAGTAAGG
CGGGTATTGCAGCGGCTTTAGAGACGTTGCAGGTTGTGTACAACACGCAG
GGATCGCGTGGATTGGCGAAGAACTTGCTGTATGAACTGCCGTATTATGG
ACTGCGGTCGGCAGTGATGAAGGCGGTGTTGTGGAAACAGGCGCGGGACA
AACTGGCGGCTGTTTCTGCGTGA