Ggra3703.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3703.t1
Unique NameGgra3703.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length235
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1145167..1145871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3055.EDO98416
PFAMstRNA_edit
Max annot lvl3041|Chlorophyta
Evalue1.2e-35
EggNOG OGs28KZ5@1|root,2QTG1@2759|Eukaryota,37IZT@33090|Viridiplantae,34KUZ@3041|Chlorophyta
DescriptionAminoacyl-tRNA editing domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3703Ggra3703Gracilaria gracilis GNS1m malegenetig00000850_pilon 1145167..1145871 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3703.t1.stop1Ggra3703.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 1145167..1145169 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3703.t1.CDS1Ggra3703.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1145167..1145871 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3703.t1.exon1Ggra3703.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 1145167..1145871 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3703.t1.start1Ggra3703.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 1145869..1145871 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3703.t1Ggra3703.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 1145167..1145871 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3703.t1 ID=Ggra3703.t1|Name=Ggra3703.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=235bp
MTRKESIDEALKVLEDRVVQLESTERKVSRRALRSKQGNGPPEALDAFAN
HIRVLALSAGFRDIRLVRCPDPYYSWTLEKRRAYLNAPAISHLTKSIVME
NTRHEGQSDPSHPTTSRYLCCVVPYNAKIDSDKLRAAIRSMFPDLGLPTP
GIKGFNYRLGEDCIRVTGYVPNGVTPLGLLTPMPVIVAKQISELTPEEFW
LGAGEVSLKWRVQIPEFFSAFKPFVIDFVNKDDN*
back to top

spliced messenger RNA

>Ggra3703.t1 ID=Ggra3703.t1|Name=Ggra3703.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=705bp|location=Sequence derived from alignment at tig00000850_pilon:1145167..1145871- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCGGAAAGAAAGTATCGACGAGGCGTTGAAGGTTTTGGAGGACCG
CGTTGTTCAACTTGAGTCCACGGAAAGGAAAGTGAGCCGCAGAGCATTGC
GTTCGAAACAGGGAAATGGTCCTCCAGAGGCACTAGATGCGTTCGCAAAC
CACATACGTGTTCTTGCTCTGTCGGCAGGTTTCAGAGATATAAGACTAGT
ACGATGCCCGGACCCCTATTATAGCTGGACTCTTGAAAAACGTCGGGCAT
ATCTAAACGCCCCTGCGATTTCTCATCTAACGAAGTCCATTGTAATGGAA
AATACTCGACATGAAGGCCAGTCAGATCCGTCACATCCAACAACATCACG
GTACCTCTGTTGCGTTGTTCCATACAATGCCAAGATCGATTCCGACAAGC
TTCGCGCTGCAATTCGCTCTATGTTCCCTGATCTTGGTTTGCCTACCCCT
GGTATAAAAGGGTTCAATTATCGCTTGGGGGAAGACTGCATTAGAGTAAC
CGGTTATGTCCCAAATGGCGTCACACCGCTTGGTCTCTTGACGCCTATGC
CAGTCATTGTCGCAAAGCAAATCTCAGAGTTAACCCCAGAAGAGTTTTGG
TTAGGGGCAGGGGAAGTGTCCTTGAAATGGCGCGTGCAGATTCCGGAGTT
TTTCAGCGCGTTTAAGCCATTCGTCATTGATTTTGTTAACAAAGACGACA
ACTGA
back to top

protein sequence of Ggra3703.t1

>Ggra3703.t1 ID=Ggra3703.t1|Name=Ggra3703.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=235bp
MTRKESIDEALKVLEDRVVQLESTERKVSRRALRSKQGNGPPEALDAFAN
HIRVLALSAGFRDIRLVRCPDPYYSWTLEKRRAYLNAPAISHLTKSIVME
NTRHEGQSDPSHPTTSRYLCCVVPYNAKIDSDKLRAAIRSMFPDLGLPTP
GIKGFNYRLGEDCIRVTGYVPNGVTPLGLLTPMPVIVAKQISELTPEEFW
LGAGEVSLKWRVQIPEFFSAFKPFVIDFVNKDDN*
back to top

mRNA from alignment at tig00000850_pilon:1145167..1145871-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3703.t1 ID=Ggra3703.t1|Name=Ggra3703.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=705bp|location=Sequence derived from alignment at tig00000850_pilon:1145167..1145871- (Gracilaria gracilis GNS1m male)
ATGACTCGGAAAGAAAGTATCGACGAGGCGTTGAAGGTTTTGGAGGACCG
CGTTGTTCAACTTGAGTCCACGGAAAGGAAAGTGAGCCGCAGAGCATTGC
GTTCGAAACAGGGAAATGGTCCTCCAGAGGCACTAGATGCGTTCGCAAAC
CACATACGTGTTCTTGCTCTGTCGGCAGGTTTCAGAGATATAAGACTAGT
ACGATGCCCGGACCCCTATTATAGCTGGACTCTTGAAAAACGTCGGGCAT
ATCTAAACGCCCCTGCGATTTCTCATCTAACGAAGTCCATTGTAATGGAA
AATACTCGACATGAAGGCCAGTCAGATCCGTCACATCCAACAACATCACG
GTACCTCTGTTGCGTTGTTCCATACAATGCCAAGATCGATTCCGACAAGC
TTCGCGCTGCAATTCGCTCTATGTTCCCTGATCTTGGTTTGCCTACCCCT
GGTATAAAAGGGTTCAATTATCGCTTGGGGGAAGACTGCATTAGAGTAAC
CGGTTATGTCCCAAATGGCGTCACACCGCTTGGTCTCTTGACGCCTATGC
CAGTCATTGTCGCAAAGCAAATCTCAGAGTTAACCCCAGAAGAGTTTTGG
TTAGGGGCAGGGGAAGTGTCCTTGAAATGGCGCGTGCAGATTCCGGAGTT
TTTCAGCGCGTTTAAGCCATTCGTCATTGATTTTGTTAACAAAGACGACA
ACTGA
back to top

Coding sequence (CDS) from alignment at tig00000850_pilon:1145167..1145871-

>Ggra3703.t1 ID=Ggra3703.t1|Name=Ggra3703.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=705bp|location=Sequence derived from alignment at tig00000850_pilon:1145167..1145871- (Gracilaria gracilis GNS1m male)
ATGACTCGGAAAGAAAGTATCGACGAGGCGTTGAAGGTTTTGGAGGACCG
CGTTGTTCAACTTGAGTCCACGGAAAGGAAAGTGAGCCGCAGAGCATTGC
GTTCGAAACAGGGAAATGGTCCTCCAGAGGCACTAGATGCGTTCGCAAAC
CACATACGTGTTCTTGCTCTGTCGGCAGGTTTCAGAGATATAAGACTAGT
ACGATGCCCGGACCCCTATTATAGCTGGACTCTTGAAAAACGTCGGGCAT
ATCTAAACGCCCCTGCGATTTCTCATCTAACGAAGTCCATTGTAATGGAA
AATACTCGACATGAAGGCCAGTCAGATCCGTCACATCCAACAACATCACG
GTACCTCTGTTGCGTTGTTCCATACAATGCCAAGATCGATTCCGACAAGC
TTCGCGCTGCAATTCGCTCTATGTTCCCTGATCTTGGTTTGCCTACCCCT
GGTATAAAAGGGTTCAATTATCGCTTGGGGGAAGACTGCATTAGAGTAAC
CGGTTATGTCCCAAATGGCGTCACACCGCTTGGTCTCTTGACGCCTATGC
CAGTCATTGTCGCAAAGCAAATCTCAGAGTTAACCCCAGAAGAGTTTTGG
TTAGGGGCAGGGGAAGTGTCCTTGAAATGGCGCGTGCAGATTCCGGAGTT
TTTCAGCGCGTTTAAGCCATTCGTCATTGATTTTGTTAACAAAGACGACA
ACTGA
back to top