Ggra3702.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3702.t1
Unique NameGgra3702.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length694
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1141673..1144190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708220.1
Preferred nameSLY1
PFAMsSec1
Max annot lvl2759|Eukaryota
KEGG koko:K19998
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
Evalue2e-141
EggNOG OGsCOG5158@1|root,KOG1301@2759|Eukaryota
Descriptionvesicle docking involved in exocytosis
COG categoryU
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3702Ggra3702Gracilaria gracilis GNS1m malegenetig00000850_pilon 1141673..1144190 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3702.t1Ggra3702.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 1141673..1144190 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3702.t1.stop1Ggra3702.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 1141673..1141675 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3702.t1.CDS1Ggra3702.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1141673..1141845 -
Ggra3702.t1.CDS2Ggra3702.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1141952..1141981 -
Ggra3702.t1.CDS3Ggra3702.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1142123..1142160 -
Ggra3702.t1.CDS4Ggra3702.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1142350..1144190 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3702.t1.exon1Ggra3702.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 1141673..1141845 -
Ggra3702.t1.exon2Ggra3702.t1.exon2Gracilaria gracilis GNS1m maleexontig00000850_pilon 1141952..1141981 -
Ggra3702.t1.exon3Ggra3702.t1.exon3Gracilaria gracilis GNS1m maleexontig00000850_pilon 1142123..1142160 -
Ggra3702.t1.exon4Ggra3702.t1.exon4Gracilaria gracilis GNS1m maleexontig00000850_pilon 1142350..1144190 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3702.t1.intron1Ggra3702.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000850_pilon 1141846..1141951 -
Ggra3702.t1.intron2Ggra3702.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000850_pilon 1141982..1142122 -
Ggra3702.t1.intron3Ggra3702.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000850_pilon 1142161..1142349 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3702.t1.start1Ggra3702.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 1144188..1144190 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3702.t1 ID=Ggra3702.t1|Name=Ggra3702.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=694bp
MLSSCTAGPDALEDSNDVWKVLIYDATGRDIIAPLLQVADLRAAGVTLHM
MLHAARQPIPDVPAVYFVEPTKENMTRISNDATKGFYASLWVNFTDSISR
DLLEGFADMMATSSNLSPFAGRIARVYDMYTSFLSLEDSLFHLNLPGSYV
ALNAPNVTDSEVEAVIKSIVDRLFCLIVTLGVAPVIRAQRGGPALHVARM
LEQRIREHLISSNNVFSETMSFAAAPAERPLLVIVDRSIDMSVMLHHTWT
YQALAHDTLGMKLNRVTVPQKDENSGMGDVRKRVFDLDKSDSFWAKNAGL
PFPMVADAVENALQAYQQEVAELNRSAGAIGEDPIDPATATLKDGANANK
LAAAISSIPELSKKKRTIDLHTNIATAILDQIKDRGLDGFFQVEEELLMR
PNTFDVERILALLRNMKGTPTDKLRLFLVYYLCVDNASENELKRCIEALE
TAGCSDLRAYSYLKSIRAFTKKVSAIPKAPLTASTSIGSGYALSVLDTLS
QVASNVNKLIISADKAFAATRIVQTLMDRKGDAGILEEYETLDPKAPKGT
VPTAAARPCKEAVLFVVGPGNYIEFQNCQDQVCSKVVQDGKNTKFVPNGK
TVIYGATELCSGAEKNISFVLTCIVWDAMNPYRSERAELSSMVSISWFTM
VDNSGLSGNIEQTSHEERKLAESDRYRQFQNYCYSTILWTEAF*
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spliced messenger RNA

>Ggra3702.t1 ID=Ggra3702.t1|Name=Ggra3702.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2082bp|location=Sequence derived from alignment at tig00000850_pilon:1141673..1144190- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTCCTCGTGCACCGCAGGGCCTGATGCTCTTGAGGACAGTAACGA
TGTTTGGAAGGTTTTAATATATGACGCTACCGGTAGAGATATCATTGCTC
CCTTGTTGCAGGTAGCTGATTTGCGAGCCGCTGGAGTTACACTTCACATG
ATGCTGCACGCAGCTCGCCAGCCGATCCCTGACGTCCCAGCAGTTTATTT
TGTCGAGCCGACGAAAGAGAATATGACCCGAATTTCTAATGATGCGACCA
AAGGTTTTTATGCGAGTCTATGGGTCAACTTCACGGACTCAATATCCCGA
GATCTTCTCGAAGGCTTTGCCGATATGATGGCTACCAGTTCCAATCTCAG
CCCATTTGCTGGTAGAATAGCACGAGTATACGACATGTATACATCCTTTC
TTTCTCTTGAAGACAGTTTATTCCATTTGAATCTCCCGGGTTCGTACGTT
GCATTGAATGCTCCGAATGTCACTGATTCCGAAGTGGAAGCAGTTATCAA
GTCAATCGTTGATCGTCTATTTTGCTTGATCGTCACTCTCGGTGTGGCGC
CTGTTATTCGGGCTCAGAGGGGAGGACCTGCGTTGCATGTCGCGCGCATG
CTCGAACAGCGTATTCGAGAGCATCTTATTTCAAGCAACAACGTATTCTC
GGAGACAATGTCCTTTGCCGCTGCGCCAGCAGAACGGCCGTTACTGGTTA
TCGTCGATCGCAGCATTGATATGTCTGTGATGCTCCATCACACATGGACA
TATCAAGCTCTCGCGCACGACACCTTGGGTATGAAGCTGAATCGAGTAAC
CGTCCCACAGAAAGATGAAAACAGTGGTATGGGCGACGTTCGGAAACGCG
TGTTCGACTTGGACAAAAGCGATAGTTTCTGGGCTAAGAATGCCGGACTT
CCGTTTCCGATGGTTGCTGATGCTGTTGAAAATGCGCTTCAGGCCTATCA
GCAAGAAGTCGCGGAACTGAATCGATCTGCGGGTGCCATCGGCGAAGACC
CCATTGATCCAGCTACCGCGACGCTTAAAGATGGCGCAAACGCAAACAAA
CTAGCTGCGGCTATCTCAAGTATTCCTGAGCTTTCAAAGAAGAAACGCAC
TATCGATCTACACACAAACATTGCCACAGCCATTCTGGATCAAATTAAAG
ATAGAGGCTTGGACGGATTCTTTCAAGTAGAAGAAGAGCTGCTTATGCGA
CCTAATACTTTCGATGTAGAACGCATCTTGGCCTTGCTGAGGAATATGAA
GGGGACGCCGACGGATAAACTAAGACTGTTTTTGGTCTACTATCTATGCG
TAGATAATGCAAGCGAAAATGAACTGAAACGGTGCATTGAGGCTCTGGAA
ACTGCTGGTTGTTCTGACCTACGTGCGTATTCTTACCTGAAGAGCATCAG
AGCATTCACGAAGAAGGTATCGGCAATTCCCAAGGCTCCTTTGACTGCCT
CCACAAGTATAGGAAGTGGGTATGCGCTTTCTGTGTTAGACACGCTCTCG
CAAGTGGCAAGCAACGTGAATAAGTTGATAATTTCTGCAGACAAAGCGTT
TGCAGCTACACGAATCGTGCAAACTTTAATGGATAGGAAAGGGGATGCTG
GTATTCTTGAGGAGTATGAGACGCTGGATCCAAAGGCCCCTAAGGGTACC
GTTCCAACTGCAGCCGCGCGGCCTTGCAAGGAGGCCGTCTTGTTTGTCGT
GGGACCTGGGAATTACATCGAGTTTCAGAATTGCCAAGACCAAGTCTGTT
CCAAGGTTGTTCAAGATGGCAAGAACACCAAGTTTGTACCAAATGGGAAG
ACAGTCATATACGGAGCTACCGAACTATGCTCCGGTGCTGAGAAAAATAT
TAGTTTTGTGCTCACTTGCATCGTATGGGATGCTATGAATCCTTACCGTT
CCGAACGAGCAGAACTATCTTCCATGGTAAGTATTTCATGGTTTACCATG
GTAGACAATTCGGGCCTCTCGGGAAACATCGAACAGACGTCTCACGAAGA
GAGGAAGCTGGCTGAAAGCGACAGGTATCGTCAATTTCAGAATTACTGCT
ACAGTACCATCCTGTGGACTGAAGCGTTCTAA
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protein sequence of Ggra3702.t1

>Ggra3702.t1 ID=Ggra3702.t1|Name=Ggra3702.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=694bp
MLSSCTAGPDALEDSNDVWKVLIYDATGRDIIAPLLQVADLRAAGVTLHM
MLHAARQPIPDVPAVYFVEPTKENMTRISNDATKGFYASLWVNFTDSISR
DLLEGFADMMATSSNLSPFAGRIARVYDMYTSFLSLEDSLFHLNLPGSYV
ALNAPNVTDSEVEAVIKSIVDRLFCLIVTLGVAPVIRAQRGGPALHVARM
LEQRIREHLISSNNVFSETMSFAAAPAERPLLVIVDRSIDMSVMLHHTWT
YQALAHDTLGMKLNRVTVPQKDENSGMGDVRKRVFDLDKSDSFWAKNAGL
PFPMVADAVENALQAYQQEVAELNRSAGAIGEDPIDPATATLKDGANANK
LAAAISSIPELSKKKRTIDLHTNIATAILDQIKDRGLDGFFQVEEELLMR
PNTFDVERILALLRNMKGTPTDKLRLFLVYYLCVDNASENELKRCIEALE
TAGCSDLRAYSYLKSIRAFTKKVSAIPKAPLTASTSIGSGYALSVLDTLS
QVASNVNKLIISADKAFAATRIVQTLMDRKGDAGILEEYETLDPKAPKGT
VPTAAARPCKEAVLFVVGPGNYIEFQNCQDQVCSKVVQDGKNTKFVPNGK
TVIYGATELCSGAEKNISFVLTCIVWDAMNPYRSERAELSSMVSISWFTM
VDNSGLSGNIEQTSHEERKLAESDRYRQFQNYCYSTILWTEAF*
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mRNA from alignment at tig00000850_pilon:1141673..1144190-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3702.t1 ID=Ggra3702.t1|Name=Ggra3702.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2518bp|location=Sequence derived from alignment at tig00000850_pilon:1141673..1144190- (Gracilaria gracilis GNS1m male)
ATGCTGTCCTCGTGCACCGCAGGGCCTGATGCTCTTGAGGACAGTAACGA
TGTTTGGAAGGTTTTAATATATGACGCTACCGGTAGAGATATCATTGCTC
CCTTGTTGCAGGTAGCTGATTTGCGAGCCGCTGGAGTTACACTTCACATG
ATGCTGCACGCAGCTCGCCAGCCGATCCCTGACGTCCCAGCAGTTTATTT
TGTCGAGCCGACGAAAGAGAATATGACCCGAATTTCTAATGATGCGACCA
AAGGTTTTTATGCGAGTCTATGGGTCAACTTCACGGACTCAATATCCCGA
GATCTTCTCGAAGGCTTTGCCGATATGATGGCTACCAGTTCCAATCTCAG
CCCATTTGCTGGTAGAATAGCACGAGTATACGACATGTATACATCCTTTC
TTTCTCTTGAAGACAGTTTATTCCATTTGAATCTCCCGGGTTCGTACGTT
GCATTGAATGCTCCGAATGTCACTGATTCCGAAGTGGAAGCAGTTATCAA
GTCAATCGTTGATCGTCTATTTTGCTTGATCGTCACTCTCGGTGTGGCGC
CTGTTATTCGGGCTCAGAGGGGAGGACCTGCGTTGCATGTCGCGCGCATG
CTCGAACAGCGTATTCGAGAGCATCTTATTTCAAGCAACAACGTATTCTC
GGAGACAATGTCCTTTGCCGCTGCGCCAGCAGAACGGCCGTTACTGGTTA
TCGTCGATCGCAGCATTGATATGTCTGTGATGCTCCATCACACATGGACA
TATCAAGCTCTCGCGCACGACACCTTGGGTATGAAGCTGAATCGAGTAAC
CGTCCCACAGAAAGATGAAAACAGTGGTATGGGCGACGTTCGGAAACGCG
TGTTCGACTTGGACAAAAGCGATAGTTTCTGGGCTAAGAATGCCGGACTT
CCGTTTCCGATGGTTGCTGATGCTGTTGAAAATGCGCTTCAGGCCTATCA
GCAAGAAGTCGCGGAACTGAATCGATCTGCGGGTGCCATCGGCGAAGACC
CCATTGATCCAGCTACCGCGACGCTTAAAGATGGCGCAAACGCAAACAAA
CTAGCTGCGGCTATCTCAAGTATTCCTGAGCTTTCAAAGAAGAAACGCAC
TATCGATCTACACACAAACATTGCCACAGCCATTCTGGATCAAATTAAAG
ATAGAGGCTTGGACGGATTCTTTCAAGTAGAAGAAGAGCTGCTTATGCGA
CCTAATACTTTCGATGTAGAACGCATCTTGGCCTTGCTGAGGAATATGAA
GGGGACGCCGACGGATAAACTAAGACTGTTTTTGGTCTACTATCTATGCG
TAGATAATGCAAGCGAAAATGAACTGAAACGGTGCATTGAGGCTCTGGAA
ACTGCTGGTTGTTCTGACCTACGTGCGTATTCTTACCTGAAGAGCATCAG
AGCATTCACGAAGAAGGTATCGGCAATTCCCAAGGCTCCTTTGACTGCCT
CCACAAGTATAGGAAGTGGGTATGCGCTTTCTGTGTTAGACACGCTCTCG
CAAGTGGCAAGCAACGTGAATAAGTTGATAATTTCTGCAGACAAAGCGTT
TGCAGCTACACGAATCGTGCAAACTTTAATGGATAGGAAAGGGGATGCTG
GTATTCTTGAGGAGTATGAGACGCTGGATCCAAAGGCCCCTAAGGGTACC
GTTCCAACTGCAGCCGCGCGGCCTTGCAAGGAGGCCGTCTTGTTTGTCGT
GGGACCTGGGAATTACATCGAGTTTCAGAATTGCCAAGACCAAGTCTGTT
CCAAGGTTGTTCAAGATGGCAAGAACACCAAGTTTGTACCAAATGGGAAG
ACAGTCATATACGGAGCTACCGAACTATGCTCCGGTGCTGAGTTTGTCGA
ACAACTGCAAAGGAGCGGTCCAGCATCAGCCACCCCTTGACGAACCCCGG
TCTCCACAGGACCTCAGTTTATGCAGTCTGATCAGTGCTACTGACTGGTG
CCTTGTATCTTAGAGTGAGATGTAGTACGGCTCTGCACATCTGATACCAA
CTTTCGTTTGATTACTACTTCATGGGAAAGGAAAAATATTAGTTTTGTGC
TCACTTGCATCGTATGGGGTACGAATTCACCGTCACATGTTCATATATTC
ATGACTTGCTATGCTAGATTCTATCTGAGACTTGTACTAACTTAAACATG
AAATGCGCCTAATGCTCCGGGATTTGTTTGACTGCTTCCACTGATATGTG
GAAAACCAGATGCTATGAATCCTTACCGTTCCGAACGAGGTGTGTTGCCT
CCCGCGCATTTCATCTTTTCTTCTGTGTGCTAGATGCTGCATCACGGGGT
AAACTAACGTGTATCTGTACATCCAAAAATGTTCTTGAGAACCAGCAGAA
CTATCTTCCATGGTAAGTATTTCATGGTTTACCATGGTAGACAATTCGGG
CCTCTCGGGAAACATCGAACAGACGTCTCACGAAGAGAGGAAGCTGGCTG
AAAGCGACAGGTATCGTCAATTTCAGAATTACTGCTACAGTACCATCCTG
TGGACTGAAGCGTTCTAA
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Coding sequence (CDS) from alignment at tig00000850_pilon:1141673..1144190-

>Ggra3702.t1 ID=Ggra3702.t1|Name=Ggra3702.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2082bp|location=Sequence derived from alignment at tig00000850_pilon:1141673..1144190- (Gracilaria gracilis GNS1m male)
ATGCTGTCCTCGTGCACCGCAGGGCCTGATGCTCTTGAGGACAGTAACGA
TGTTTGGAAGGTTTTAATATATGACGCTACCGGTAGAGATATCATTGCTC
CCTTGTTGCAGGTAGCTGATTTGCGAGCCGCTGGAGTTACACTTCACATG
ATGCTGCACGCAGCTCGCCAGCCGATCCCTGACGTCCCAGCAGTTTATTT
TGTCGAGCCGACGAAAGAGAATATGACCCGAATTTCTAATGATGCGACCA
AAGGTTTTTATGCGAGTCTATGGGTCAACTTCACGGACTCAATATCCCGA
GATCTTCTCGAAGGCTTTGCCGATATGATGGCTACCAGTTCCAATCTCAG
CCCATTTGCTGGTAGAATAGCACGAGTATACGACATGTATACATCCTTTC
TTTCTCTTGAAGACAGTTTATTCCATTTGAATCTCCCGGGTTCGTACGTT
GCATTGAATGCTCCGAATGTCACTGATTCCGAAGTGGAAGCAGTTATCAA
GTCAATCGTTGATCGTCTATTTTGCTTGATCGTCACTCTCGGTGTGGCGC
CTGTTATTCGGGCTCAGAGGGGAGGACCTGCGTTGCATGTCGCGCGCATG
CTCGAACAGCGTATTCGAGAGCATCTTATTTCAAGCAACAACGTATTCTC
GGAGACAATGTCCTTTGCCGCTGCGCCAGCAGAACGGCCGTTACTGGTTA
TCGTCGATCGCAGCATTGATATGTCTGTGATGCTCCATCACACATGGACA
TATCAAGCTCTCGCGCACGACACCTTGGGTATGAAGCTGAATCGAGTAAC
CGTCCCACAGAAAGATGAAAACAGTGGTATGGGCGACGTTCGGAAACGCG
TGTTCGACTTGGACAAAAGCGATAGTTTCTGGGCTAAGAATGCCGGACTT
CCGTTTCCGATGGTTGCTGATGCTGTTGAAAATGCGCTTCAGGCCTATCA
GCAAGAAGTCGCGGAACTGAATCGATCTGCGGGTGCCATCGGCGAAGACC
CCATTGATCCAGCTACCGCGACGCTTAAAGATGGCGCAAACGCAAACAAA
CTAGCTGCGGCTATCTCAAGTATTCCTGAGCTTTCAAAGAAGAAACGCAC
TATCGATCTACACACAAACATTGCCACAGCCATTCTGGATCAAATTAAAG
ATAGAGGCTTGGACGGATTCTTTCAAGTAGAAGAAGAGCTGCTTATGCGA
CCTAATACTTTCGATGTAGAACGCATCTTGGCCTTGCTGAGGAATATGAA
GGGGACGCCGACGGATAAACTAAGACTGTTTTTGGTCTACTATCTATGCG
TAGATAATGCAAGCGAAAATGAACTGAAACGGTGCATTGAGGCTCTGGAA
ACTGCTGGTTGTTCTGACCTACGTGCGTATTCTTACCTGAAGAGCATCAG
AGCATTCACGAAGAAGGTATCGGCAATTCCCAAGGCTCCTTTGACTGCCT
CCACAAGTATAGGAAGTGGGTATGCGCTTTCTGTGTTAGACACGCTCTCG
CAAGTGGCAAGCAACGTGAATAAGTTGATAATTTCTGCAGACAAAGCGTT
TGCAGCTACACGAATCGTGCAAACTTTAATGGATAGGAAAGGGGATGCTG
GTATTCTTGAGGAGTATGAGACGCTGGATCCAAAGGCCCCTAAGGGTACC
GTTCCAACTGCAGCCGCGCGGCCTTGCAAGGAGGCCGTCTTGTTTGTCGT
GGGACCTGGGAATTACATCGAGTTTCAGAATTGCCAAGACCAAGTCTGTT
CCAAGGTTGTTCAAGATGGCAAGAACACCAAGTTTGTACCAAATGGGAAG
ACAGTCATATACGGAGCTACCGAACTATGCTCCGGTGCTGAGAAAAATAT
TAGTTTTGTGCTCACTTGCATCGTATGGGATGCTATGAATCCTTACCGTT
CCGAACGAGCAGAACTATCTTCCATGGTAAGTATTTCATGGTTTACCATG
GTAGACAATTCGGGCCTCTCGGGAAACATCGAACAGACGTCTCACGAAGA
GAGGAAGCTGGCTGAAAGCGACAGGTATCGTCAATTTCAGAATTACTGCT
ACAGTACCATCCTGTGGACTGAAGCGTTCTAA
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