Ggra3700.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3700.t1
Unique Name	Ggra3700.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	435

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000850_pilon	contig	tig00000850_pilon:1130476..1131780 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4098.XP_009629653.1
Preferred name	UAH
PFAMs	M20_dimer,Peptidase_M20,Peptidase_M28
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00153,RC02798,RC02805
KEGG ko	ko:K18151
KEGG Reaction	R00469
KEGG Pathway	ko00230,ko01100,ko01120,map00230,map01100,map01120
GOs	GO:0000255,GO:0000256,GO:0003674,GO:0003824,GO:0004848,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006139,GO:0006144,GO:0006145,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009112,GO:0009987,GO:0010135,GO:0010136,GO:0012505,GO:0016787,GO:0016810,GO:0016813,GO:0017144,GO:0019439,GO:0034641,GO:0042737,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043605,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046113,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575
Evalue	6.03e-132
EggNOG OGs	COG0624@1\|root,2QPR4@2759\|Eukaryota,37N19@33090\|Viridiplantae,3G9HT@35493\|Streptophyta,44D99@71274\|asterids
EC	3.5.1.116
Description	Peptidase family M28
COG category	E
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3700	Ggra3700	Gracilaria gracilis GNS1m male	gene	tig00000850_pilon 1130476..1131780 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3700.t1.start1	Ggra3700.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000850_pilon 1130476..1130478 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3700.t1.CDS1	Ggra3700.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000850_pilon 1130476..1131780 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3700.t1.exon1	Ggra3700.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000850_pilon 1130476..1131780 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3700.t1.stop1	Ggra3700.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000850_pilon 1131778..1131780 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3700.t1	Ggra3700.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000850_pilon 1130476..1131780 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000850_pilon:1130476..1131780+
coding sequence from alignment at tig00000850_pilon:1130476..1131780+

mRNA sequence

>Ggra3700.t1 ID=Ggra3700.t1|Name=Ggra3700.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=435bp
MFCFVLFSSLILISRISSGMVQVNTTSVIHNLHQLSTYNDFSPPSVQRIL
YTSSDISARKYVKSLMEATGLQVSQDAVGNMFGTWEGMTSLPGVLTGSHI
DAIPHSGMYDGTLGVIGAIEAIRALRQSGYSPQRSITVIMFTSEEPTRFG
LSCIGSRLLVNAMKIDKLDELKDENQTSFHSARKQAGYDQRVESVPLDAS
SFSAFVELHIEQADTLEKSGINIGAVSHIAAPAAGKVTFEGNGGHAGSLL
MKYRNDAGLAAAQLALEVEKTALQRGEDCVATTGKLELFPGAINSVPSIA
TMSLDVRDVDLERRDSALRDIETEMKAIALQRNVSAKFEINSKDDPAVCD
SRIVDTVVTVAEQLGLSSTRMVSRAYHDALFMAKLFPTAMIFVPCRDGVS
HRPDEFVQQSDMHNGVAVLAGVLQSLAGEERTEL*

spliced messenger RNA

>Ggra3700.t1 ID=Ggra3700.t1|Name=Ggra3700.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1305bp|location=Sequence derived from alignment at tig00000850_pilon:1130476..1131780+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTTGCTTCGTTTTGTTTTCCTCTTTGATCCTTATATCTCGCATATC
CTCTGGGATGGTGCAGGTTAACACCACATCCGTCATTCATAATCTTCACC
AGCTTTCCACCTACAATGATTTCTCTCCCCCTTCTGTTCAGCGAATTCTG
TACACAAGTTCTGATATATCTGCCAGAAAGTACGTGAAGTCCCTTATGGA
AGCTACTGGACTACAAGTTTCGCAGGATGCTGTGGGAAACATGTTTGGGA
CATGGGAGGGGATGACGTCCTTACCTGGCGTGCTAACAGGCTCACATATT
GACGCAATTCCGCATAGTGGGATGTATGACGGGACTCTGGGTGTCATAGG
AGCTATAGAAGCTATTCGAGCATTACGCCAATCTGGATATTCACCGCAGC
GTTCCATAACCGTGATAATGTTCACTTCCGAAGAGCCTACCCGTTTCGGT
TTAAGTTGTATCGGCAGTCGTCTACTTGTGAACGCTATGAAGATTGACAA
GCTTGACGAACTCAAGGACGAAAACCAGACCTCTTTCCATTCTGCAAGGA
AACAAGCTGGATACGACCAGCGTGTAGAATCGGTACCCTTAGATGCTTCC
TCCTTTTCTGCTTTCGTGGAGTTGCACATTGAACAAGCGGACACTCTGGA
AAAGTCAGGCATCAATATTGGCGCTGTATCCCACATAGCTGCACCAGCTG
CTGGAAAAGTTACATTTGAAGGCAACGGTGGTCATGCAGGGAGTTTGCTG
ATGAAGTACCGAAATGACGCAGGTCTGGCAGCGGCGCAATTGGCGCTGGA
AGTGGAAAAGACAGCTCTTCAAAGGGGAGAAGACTGTGTTGCAACTACAG
GAAAACTGGAACTGTTCCCGGGTGCGATTAATAGCGTACCAAGCATTGCC
ACGATGTCCTTAGACGTCCGTGATGTGGACTTGGAACGAAGAGATTCTGC
CTTACGAGATATTGAAACTGAGATGAAGGCCATAGCTTTACAAAGAAACG
TAAGCGCCAAATTCGAGATAAATAGCAAGGACGACCCTGCGGTTTGTGAC
TCTCGCATCGTCGATACGGTGGTTACCGTGGCAGAGCAGCTTGGGCTTAG
CAGTACGAGAATGGTCTCCCGTGCTTATCATGACGCATTGTTTATGGCGA
AATTGTTCCCTACCGCCATGATATTTGTTCCCTGTCGGGATGGGGTGAGT
CATAGGCCAGATGAATTCGTGCAACAAAGCGATATGCACAACGGTGTGGC
AGTACTTGCCGGGGTTCTGCAAAGTCTAGCCGGTGAAGAAAGAACAGAGC
TTTGA

protein sequence of Ggra3700.t1

>Ggra3700.t1 ID=Ggra3700.t1|Name=Ggra3700.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=435bp
MFCFVLFSSLILISRISSGMVQVNTTSVIHNLHQLSTYNDFSPPSVQRIL
YTSSDISARKYVKSLMEATGLQVSQDAVGNMFGTWEGMTSLPGVLTGSHI
DAIPHSGMYDGTLGVIGAIEAIRALRQSGYSPQRSITVIMFTSEEPTRFG
LSCIGSRLLVNAMKIDKLDELKDENQTSFHSARKQAGYDQRVESVPLDAS
SFSAFVELHIEQADTLEKSGINIGAVSHIAAPAAGKVTFEGNGGHAGSLL
MKYRNDAGLAAAQLALEVEKTALQRGEDCVATTGKLELFPGAINSVPSIA
TMSLDVRDVDLERRDSALRDIETEMKAIALQRNVSAKFEINSKDDPAVCD
SRIVDTVVTVAEQLGLSSTRMVSRAYHDALFMAKLFPTAMIFVPCRDGVS
HRPDEFVQQSDMHNGVAVLAGVLQSLAGEERTEL*

mRNA from alignment at tig00000850_pilon:1130476..1131780+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3700.t1 ID=Ggra3700.t1|Name=Ggra3700.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1305bp|location=Sequence derived from alignment at tig00000850_pilon:1130476..1131780+ (Gracilaria gracilis GNS1m male)
ATGTTTTGCTTCGTTTTGTTTTCCTCTTTGATCCTTATATCTCGCATATC
CTCTGGGATGGTGCAGGTTAACACCACATCCGTCATTCATAATCTTCACC
AGCTTTCCACCTACAATGATTTCTCTCCCCCTTCTGTTCAGCGAATTCTG
TACACAAGTTCTGATATATCTGCCAGAAAGTACGTGAAGTCCCTTATGGA
AGCTACTGGACTACAAGTTTCGCAGGATGCTGTGGGAAACATGTTTGGGA
CATGGGAGGGGATGACGTCCTTACCTGGCGTGCTAACAGGCTCACATATT
GACGCAATTCCGCATAGTGGGATGTATGACGGGACTCTGGGTGTCATAGG
AGCTATAGAAGCTATTCGAGCATTACGCCAATCTGGATATTCACCGCAGC
GTTCCATAACCGTGATAATGTTCACTTCCGAAGAGCCTACCCGTTTCGGT
TTAAGTTGTATCGGCAGTCGTCTACTTGTGAACGCTATGAAGATTGACAA
GCTTGACGAACTCAAGGACGAAAACCAGACCTCTTTCCATTCTGCAAGGA
AACAAGCTGGATACGACCAGCGTGTAGAATCGGTACCCTTAGATGCTTCC
TCCTTTTCTGCTTTCGTGGAGTTGCACATTGAACAAGCGGACACTCTGGA
AAAGTCAGGCATCAATATTGGCGCTGTATCCCACATAGCTGCACCAGCTG
CTGGAAAAGTTACATTTGAAGGCAACGGTGGTCATGCAGGGAGTTTGCTG
ATGAAGTACCGAAATGACGCAGGTCTGGCAGCGGCGCAATTGGCGCTGGA
AGTGGAAAAGACAGCTCTTCAAAGGGGAGAAGACTGTGTTGCAACTACAG
GAAAACTGGAACTGTTCCCGGGTGCGATTAATAGCGTACCAAGCATTGCC
ACGATGTCCTTAGACGTCCGTGATGTGGACTTGGAACGAAGAGATTCTGC
CTTACGAGATATTGAAACTGAGATGAAGGCCATAGCTTTACAAAGAAACG
TAAGCGCCAAATTCGAGATAAATAGCAAGGACGACCCTGCGGTTTGTGAC
TCTCGCATCGTCGATACGGTGGTTACCGTGGCAGAGCAGCTTGGGCTTAG
CAGTACGAGAATGGTCTCCCGTGCTTATCATGACGCATTGTTTATGGCGA
AATTGTTCCCTACCGCCATGATATTTGTTCCCTGTCGGGATGGGGTGAGT
CATAGGCCAGATGAATTCGTGCAACAAAGCGATATGCACAACGGTGTGGC
AGTACTTGCCGGGGTTCTGCAAAGTCTAGCCGGTGAAGAAAGAACAGAGC
TTTGA

Coding sequence (CDS) from alignment at tig00000850_pilon:1130476..1131780+

>Ggra3700.t1 ID=Ggra3700.t1|Name=Ggra3700.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1305bp|location=Sequence derived from alignment at tig00000850_pilon:1130476..1131780+ (Gracilaria gracilis GNS1m male)
ATGTTTTGCTTCGTTTTGTTTTCCTCTTTGATCCTTATATCTCGCATATC
CTCTGGGATGGTGCAGGTTAACACCACATCCGTCATTCATAATCTTCACC
AGCTTTCCACCTACAATGATTTCTCTCCCCCTTCTGTTCAGCGAATTCTG
TACACAAGTTCTGATATATCTGCCAGAAAGTACGTGAAGTCCCTTATGGA
AGCTACTGGACTACAAGTTTCGCAGGATGCTGTGGGAAACATGTTTGGGA
CATGGGAGGGGATGACGTCCTTACCTGGCGTGCTAACAGGCTCACATATT
GACGCAATTCCGCATAGTGGGATGTATGACGGGACTCTGGGTGTCATAGG
AGCTATAGAAGCTATTCGAGCATTACGCCAATCTGGATATTCACCGCAGC
GTTCCATAACCGTGATAATGTTCACTTCCGAAGAGCCTACCCGTTTCGGT
TTAAGTTGTATCGGCAGTCGTCTACTTGTGAACGCTATGAAGATTGACAA
GCTTGACGAACTCAAGGACGAAAACCAGACCTCTTTCCATTCTGCAAGGA
AACAAGCTGGATACGACCAGCGTGTAGAATCGGTACCCTTAGATGCTTCC
TCCTTTTCTGCTTTCGTGGAGTTGCACATTGAACAAGCGGACACTCTGGA
AAAGTCAGGCATCAATATTGGCGCTGTATCCCACATAGCTGCACCAGCTG
CTGGAAAAGTTACATTTGAAGGCAACGGTGGTCATGCAGGGAGTTTGCTG
ATGAAGTACCGAAATGACGCAGGTCTGGCAGCGGCGCAATTGGCGCTGGA
AGTGGAAAAGACAGCTCTTCAAAGGGGAGAAGACTGTGTTGCAACTACAG
GAAAACTGGAACTGTTCCCGGGTGCGATTAATAGCGTACCAAGCATTGCC
ACGATGTCCTTAGACGTCCGTGATGTGGACTTGGAACGAAGAGATTCTGC
CTTACGAGATATTGAAACTGAGATGAAGGCCATAGCTTTACAAAGAAACG
TAAGCGCCAAATTCGAGATAAATAGCAAGGACGACCCTGCGGTTTGTGAC
TCTCGCATCGTCGATACGGTGGTTACCGTGGCAGAGCAGCTTGGGCTTAG
CAGTACGAGAATGGTCTCCCGTGCTTATCATGACGCATTGTTTATGGCGA
AATTGTTCCCTACCGCCATGATATTTGTTCCCTGTCGGGATGGGGTGAGT
CATAGGCCAGATGAATTCGTGCAACAAAGCGATATGCACAACGGTGTGGC
AGTACTTGCCGGGGTTCTGCAAAGTCTAGCCGGTGAAGAAAGAACAGAGC
TTTGA