Ggra37.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra37.t1
Unique NameGgra37.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length376
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000967_piloncontigtig00000967_pilon:19810..20937 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra37Ggra37Gracilaria gracilis GNS1m malegenetig00000967_pilon 19810..20937 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra37.t1.stop1Ggra37.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000967_pilon 19810..19812 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra37.t1.CDS1Ggra37.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000967_pilon 19810..20937 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra37.t1.exon1Ggra37.t1.exon1Gracilaria gracilis GNS1m maleexontig00000967_pilon 19810..20937 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra37.t1.start1Ggra37.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000967_pilon 20935..20937 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra37.t1Ggra37.t1Gracilaria gracilis GNS1m malepolypeptidetig00000967_pilon 19810..20937 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra37.t1 ID=Ggra37.t1|Name=Ggra37.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=376bp
MFCFAQRSLPPARPGLLIDYQDPCGAPTDHLPPSVMLSINRKRYTLRESA
PLVFLICLQTDTPPLVLKGRLYCNSSSIFFKSFADPLSWKLDFCSFDIVN
RKVREKSKRPGIPFEGPFLNPSNEVPYVTWNRFLVGYWLDAHEFSGLRLV
QEFLADLTIIHSRSMAATIQCLANPRTGVQLQPVSNICRENDGDEFLFIW
FPYCRPSKLKEWLRFLWNQKEITATTAIVFRRLSPRHAGFYGCIIKSAPK
ALTVRNDQREGEFSLFEVKERAVVGSPSNENGFALHTTILMKLDYDAKLF
SQVKGVFFVTEQPFMAFLLPESQTYLDVIRSEFPVFNSNAVLKLSRNSSI
GMIENQRSLLYCATENLNHLRNWGL*
back to top

spliced messenger RNA

>Ggra37.t1 ID=Ggra37.t1|Name=Ggra37.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1128bp|location=Sequence derived from alignment at tig00000967_pilon:19810..20937- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTTGTTTCGCTCAACGTTCGCTACCCCCAGCTCGACCTGGACTTCT
TATAGACTATCAGGACCCATGTGGCGCACCGACCGACCACCTGCCACCCA
GTGTCATGCTCAGCATAAATCGCAAACGATACACCTTAAGGGAAAGTGCG
CCTCTAGTCTTCCTTATATGTTTACAAACTGATACCCCACCCCTGGTTCT
GAAGGGACGTCTTTACTGCAATTCGTCGTCAATATTCTTCAAGAGTTTTG
CTGATCCTCTATCGTGGAAACTTGACTTCTGCTCATTTGATATTGTTAAT
AGAAAGGTTCGAGAGAAGTCCAAACGACCTGGCATCCCGTTTGAGGGCCC
GTTTCTTAATCCATCAAATGAGGTACCTTATGTTACCTGGAACCGATTTT
TGGTTGGATACTGGCTTGATGCTCATGAGTTCTCTGGTTTGAGGCTGGTA
CAAGAGTTTCTCGCAGATTTGACCATCATCCATAGTCGTTCTATGGCTGC
TACGATCCAGTGCTTAGCCAATCCCAGAACAGGGGTTCAACTTCAACCAG
TCTCCAATATCTGTCGGGAGAATGACGGAGACGAGTTCTTATTTATTTGG
TTTCCGTATTGCCGCCCGTCGAAATTGAAGGAGTGGTTGCGGTTTCTGTG
GAATCAGAAAGAGATAACTGCGACCACCGCAATCGTCTTTCGTCGGCTTA
GCCCGCGACATGCAGGATTCTACGGATGTATCATAAAAAGTGCTCCCAAG
GCCCTAACCGTTAGAAACGATCAAAGGGAAGGCGAGTTTTCTCTTTTTGA
AGTAAAGGAAAGGGCTGTGGTTGGTTCGCCATCCAATGAAAATGGGTTTG
CATTACATACAACAATTCTAATGAAGCTGGACTACGATGCTAAGCTTTTC
TCACAAGTGAAAGGGGTTTTCTTTGTAACTGAGCAACCGTTCATGGCATT
TTTGTTACCTGAATCGCAGACATACCTTGACGTGATCAGAAGCGAATTTC
CGGTATTTAATTCGAATGCTGTCTTGAAACTATCACGAAACTCCAGCATT
GGGATGATAGAAAATCAAAGAAGTCTACTATACTGCGCCACCGAAAACTT
GAACCATTTACGAAATTGGGGTCTATAG
back to top

protein sequence of Ggra37.t1

>Ggra37.t1 ID=Ggra37.t1|Name=Ggra37.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=376bp
MFCFAQRSLPPARPGLLIDYQDPCGAPTDHLPPSVMLSINRKRYTLRESA
PLVFLICLQTDTPPLVLKGRLYCNSSSIFFKSFADPLSWKLDFCSFDIVN
RKVREKSKRPGIPFEGPFLNPSNEVPYVTWNRFLVGYWLDAHEFSGLRLV
QEFLADLTIIHSRSMAATIQCLANPRTGVQLQPVSNICRENDGDEFLFIW
FPYCRPSKLKEWLRFLWNQKEITATTAIVFRRLSPRHAGFYGCIIKSAPK
ALTVRNDQREGEFSLFEVKERAVVGSPSNENGFALHTTILMKLDYDAKLF
SQVKGVFFVTEQPFMAFLLPESQTYLDVIRSEFPVFNSNAVLKLSRNSSI
GMIENQRSLLYCATENLNHLRNWGL*
back to top

mRNA from alignment at tig00000967_pilon:19810..20937-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra37.t1 ID=Ggra37.t1|Name=Ggra37.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1128bp|location=Sequence derived from alignment at tig00000967_pilon:19810..20937- (Gracilaria gracilis GNS1m male)
ATGTTTTGTTTCGCTCAACGTTCGCTACCCCCAGCTCGACCTGGACTTCT
TATAGACTATCAGGACCCATGTGGCGCACCGACCGACCACCTGCCACCCA
GTGTCATGCTCAGCATAAATCGCAAACGATACACCTTAAGGGAAAGTGCG
CCTCTAGTCTTCCTTATATGTTTACAAACTGATACCCCACCCCTGGTTCT
GAAGGGACGTCTTTACTGCAATTCGTCGTCAATATTCTTCAAGAGTTTTG
CTGATCCTCTATCGTGGAAACTTGACTTCTGCTCATTTGATATTGTTAAT
AGAAAGGTTCGAGAGAAGTCCAAACGACCTGGCATCCCGTTTGAGGGCCC
GTTTCTTAATCCATCAAATGAGGTACCTTATGTTACCTGGAACCGATTTT
TGGTTGGATACTGGCTTGATGCTCATGAGTTCTCTGGTTTGAGGCTGGTA
CAAGAGTTTCTCGCAGATTTGACCATCATCCATAGTCGTTCTATGGCTGC
TACGATCCAGTGCTTAGCCAATCCCAGAACAGGGGTTCAACTTCAACCAG
TCTCCAATATCTGTCGGGAGAATGACGGAGACGAGTTCTTATTTATTTGG
TTTCCGTATTGCCGCCCGTCGAAATTGAAGGAGTGGTTGCGGTTTCTGTG
GAATCAGAAAGAGATAACTGCGACCACCGCAATCGTCTTTCGTCGGCTTA
GCCCGCGACATGCAGGATTCTACGGATGTATCATAAAAAGTGCTCCCAAG
GCCCTAACCGTTAGAAACGATCAAAGGGAAGGCGAGTTTTCTCTTTTTGA
AGTAAAGGAAAGGGCTGTGGTTGGTTCGCCATCCAATGAAAATGGGTTTG
CATTACATACAACAATTCTAATGAAGCTGGACTACGATGCTAAGCTTTTC
TCACAAGTGAAAGGGGTTTTCTTTGTAACTGAGCAACCGTTCATGGCATT
TTTGTTACCTGAATCGCAGACATACCTTGACGTGATCAGAAGCGAATTTC
CGGTATTTAATTCGAATGCTGTCTTGAAACTATCACGAAACTCCAGCATT
GGGATGATAGAAAATCAAAGAAGTCTACTATACTGCGCCACCGAAAACTT
GAACCATTTACGAAATTGGGGTCTATAG
back to top

Coding sequence (CDS) from alignment at tig00000967_pilon:19810..20937-

>Ggra37.t1 ID=Ggra37.t1|Name=Ggra37.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1128bp|location=Sequence derived from alignment at tig00000967_pilon:19810..20937- (Gracilaria gracilis GNS1m male)
ATGTTTTGTTTCGCTCAACGTTCGCTACCCCCAGCTCGACCTGGACTTCT
TATAGACTATCAGGACCCATGTGGCGCACCGACCGACCACCTGCCACCCA
GTGTCATGCTCAGCATAAATCGCAAACGATACACCTTAAGGGAAAGTGCG
CCTCTAGTCTTCCTTATATGTTTACAAACTGATACCCCACCCCTGGTTCT
GAAGGGACGTCTTTACTGCAATTCGTCGTCAATATTCTTCAAGAGTTTTG
CTGATCCTCTATCGTGGAAACTTGACTTCTGCTCATTTGATATTGTTAAT
AGAAAGGTTCGAGAGAAGTCCAAACGACCTGGCATCCCGTTTGAGGGCCC
GTTTCTTAATCCATCAAATGAGGTACCTTATGTTACCTGGAACCGATTTT
TGGTTGGATACTGGCTTGATGCTCATGAGTTCTCTGGTTTGAGGCTGGTA
CAAGAGTTTCTCGCAGATTTGACCATCATCCATAGTCGTTCTATGGCTGC
TACGATCCAGTGCTTAGCCAATCCCAGAACAGGGGTTCAACTTCAACCAG
TCTCCAATATCTGTCGGGAGAATGACGGAGACGAGTTCTTATTTATTTGG
TTTCCGTATTGCCGCCCGTCGAAATTGAAGGAGTGGTTGCGGTTTCTGTG
GAATCAGAAAGAGATAACTGCGACCACCGCAATCGTCTTTCGTCGGCTTA
GCCCGCGACATGCAGGATTCTACGGATGTATCATAAAAAGTGCTCCCAAG
GCCCTAACCGTTAGAAACGATCAAAGGGAAGGCGAGTTTTCTCTTTTTGA
AGTAAAGGAAAGGGCTGTGGTTGGTTCGCCATCCAATGAAAATGGGTTTG
CATTACATACAACAATTCTAATGAAGCTGGACTACGATGCTAAGCTTTTC
TCACAAGTGAAAGGGGTTTTCTTTGTAACTGAGCAACCGTTCATGGCATT
TTTGTTACCTGAATCGCAGACATACCTTGACGTGATCAGAAGCGAATTTC
CGGTATTTAATTCGAATGCTGTCTTGAAACTATCACGAAACTCCAGCATT
GGGATGATAGAAAATCAAAGAAGTCTACTATACTGCGCCACCGAAAACTT
GAACCATTTACGAAATTGGGGTCTATAG
back to top