Ggra3697.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3697.t1
Unique NameGgra3697.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length403
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1118541..1119804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4792.ETI38300
PFAMsAAA_28
Max annot lvl4776|Peronosporales
Evalue5.56e-82
EggNOG OGs28P3U@1|root,2QVQD@2759|Eukaryota,3QD8J@4776|Peronosporales
DescriptionAAA domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3697Ggra3697Gracilaria gracilis GNS1m malegenetig00000850_pilon 1118541..1119804 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3697.t1Ggra3697.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 1118541..1119804 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3697.t1.start1Ggra3697.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 1118541..1118543 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3697.t1.CDS1Ggra3697.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1118541..1118637 +
Ggra3697.t1.CDS2Ggra3697.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1118693..1119804 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3697.t1.exon1Ggra3697.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 1118541..1118637 +
Ggra3697.t1.exon2Ggra3697.t1.exon2Gracilaria gracilis GNS1m maleexontig00000850_pilon 1118693..1119804 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3697.t1.intron1Ggra3697.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000850_pilon 1118638..1118692 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3697.t1.stop1Ggra3697.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 1119802..1119804 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3697.t1 ID=Ggra3697.t1|Name=Ggra3697.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=403bp
MTHSTLHRFAAPPMLDKRNPVYRVAITGGPCAGKTTALAEVSERLRSRGF
GVYVVPEAATLIFTGGATFEGLTPAQVLNFQTQLLRTQIALEDAFVSLAT
ASNTPSFVLCDRGSCDGRAYMTPSMWNKMLVDNGWDMVSIRDARYDVVVH
LVTAADGAEPFYTLENNKTRTESPEHAIRLDRRTQSAWVGHPHLRIIDNR
TNFREKINRVDARVSEIAGMHLTKRIVRKFLLSDIEEELSFRAEEFWVEQ
TFLSRDLGHDVQESVRKRGTGSRNTFVHKVRTGASETKRQITNREYLSLL
AHCDLSRRTVRIRRKCFLYNGNYFVLDNVTNVDPAIGLLRCHCHEGEDDV
ELPDWLHVEREVTGEQDYTMYSLSERVAKVRIREEAIQREGRISDMDFAR
SF*
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spliced messenger RNA

>Ggra3697.t1 ID=Ggra3697.t1|Name=Ggra3697.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1209bp|location=Sequence derived from alignment at tig00000850_pilon:1118541..1119804+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCACTCCACCCTGCACCGTTTTGCTGCTCCACCCATGCTGGACAA
GCGCAATCCCGTATACCGCGTTGCCATAACCGGCGGTCCTTGTGCAGGTA
AAACTACCGCCTTGGCCGAGGTGTCCGAGCGTCTGCGTTCCCGTGGATTC
GGTGTGTACGTCGTCCCCGAGGCTGCCACCCTCATCTTCACTGGCGGTGC
CACTTTCGAAGGCCTCACGCCTGCACAAGTGTTGAACTTTCAGACCCAGC
TGCTTCGTACCCAGATTGCTCTGGAAGATGCCTTCGTCTCACTCGCTACC
GCCTCAAATACTCCCAGCTTTGTCTTGTGTGACCGTGGTTCCTGTGACGG
TCGTGCCTACATGACTCCTTCTATGTGGAACAAAATGCTCGTCGACAATG
GCTGGGATATGGTATCTATTCGTGATGCACGCTATGACGTCGTCGTCCAT
CTCGTCACCGCCGCCGATGGAGCCGAACCGTTCTACACCCTGGAGAACAA
CAAGACGCGTACCGAATCGCCAGAGCATGCAATTCGCCTAGACAGACGTA
CCCAGAGCGCGTGGGTTGGACATCCGCACCTCCGCATCATAGATAACCGC
ACCAACTTCCGCGAGAAGATCAATCGCGTTGATGCAAGGGTCTCCGAAAT
CGCCGGAATGCATCTCACCAAACGCATAGTTCGCAAGTTCTTGCTGAGCG
ACATTGAAGAAGAACTGTCGTTCCGTGCAGAAGAGTTCTGGGTTGAACAA
ACTTTCCTCTCTCGCGACCTGGGCCATGACGTACAGGAAAGTGTAAGGAA
GCGGGGCACAGGTTCACGTAATACATTTGTTCATAAGGTGAGGACAGGTG
CTTCAGAAACGAAGAGACAGATAACGAATAGGGAATATCTTAGCTTGCTT
GCTCATTGTGACTTGTCCAGAAGAACTGTCCGCATCCGACGAAAATGCTT
TTTGTACAATGGGAACTATTTTGTTCTGGATAACGTCACGAACGTTGACC
CTGCCATTGGGCTCTTGCGCTGTCACTGTCACGAAGGAGAGGACGATGTC
GAACTACCGGATTGGCTCCATGTAGAACGAGAGGTGACTGGTGAACAAGA
CTATACCATGTATAGTCTTAGTGAACGTGTTGCGAAAGTCCGAATCAGGG
AAGAAGCAATACAACGCGAGGGGCGTATCAGCGACATGGACTTTGCAAGG
AGCTTTTGA
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protein sequence of Ggra3697.t1

>Ggra3697.t1 ID=Ggra3697.t1|Name=Ggra3697.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=403bp
MTHSTLHRFAAPPMLDKRNPVYRVAITGGPCAGKTTALAEVSERLRSRGF
GVYVVPEAATLIFTGGATFEGLTPAQVLNFQTQLLRTQIALEDAFVSLAT
ASNTPSFVLCDRGSCDGRAYMTPSMWNKMLVDNGWDMVSIRDARYDVVVH
LVTAADGAEPFYTLENNKTRTESPEHAIRLDRRTQSAWVGHPHLRIIDNR
TNFREKINRVDARVSEIAGMHLTKRIVRKFLLSDIEEELSFRAEEFWVEQ
TFLSRDLGHDVQESVRKRGTGSRNTFVHKVRTGASETKRQITNREYLSLL
AHCDLSRRTVRIRRKCFLYNGNYFVLDNVTNVDPAIGLLRCHCHEGEDDV
ELPDWLHVEREVTGEQDYTMYSLSERVAKVRIREEAIQREGRISDMDFAR
SF*
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mRNA from alignment at tig00000850_pilon:1118541..1119804+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3697.t1 ID=Ggra3697.t1|Name=Ggra3697.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1264bp|location=Sequence derived from alignment at tig00000850_pilon:1118541..1119804+ (Gracilaria gracilis GNS1m male)
ATGACTCACTCCACCCTGCACCGTTTTGCTGCTCCACCCATGCTGGACAA
GCGCAATCCCGTATACCGCGTTGCCATAACCGGCGGTCCTTGTGCAGGTA
CGCCATTCTCCATCACTCGCGTCAAATCTCACACAATCTAACTCAACGTT
AGGTAAAACTACCGCCTTGGCCGAGGTGTCCGAGCGTCTGCGTTCCCGTG
GATTCGGTGTGTACGTCGTCCCCGAGGCTGCCACCCTCATCTTCACTGGC
GGTGCCACTTTCGAAGGCCTCACGCCTGCACAAGTGTTGAACTTTCAGAC
CCAGCTGCTTCGTACCCAGATTGCTCTGGAAGATGCCTTCGTCTCACTCG
CTACCGCCTCAAATACTCCCAGCTTTGTCTTGTGTGACCGTGGTTCCTGT
GACGGTCGTGCCTACATGACTCCTTCTATGTGGAACAAAATGCTCGTCGA
CAATGGCTGGGATATGGTATCTATTCGTGATGCACGCTATGACGTCGTCG
TCCATCTCGTCACCGCCGCCGATGGAGCCGAACCGTTCTACACCCTGGAG
AACAACAAGACGCGTACCGAATCGCCAGAGCATGCAATTCGCCTAGACAG
ACGTACCCAGAGCGCGTGGGTTGGACATCCGCACCTCCGCATCATAGATA
ACCGCACCAACTTCCGCGAGAAGATCAATCGCGTTGATGCAAGGGTCTCC
GAAATCGCCGGAATGCATCTCACCAAACGCATAGTTCGCAAGTTCTTGCT
GAGCGACATTGAAGAAGAACTGTCGTTCCGTGCAGAAGAGTTCTGGGTTG
AACAAACTTTCCTCTCTCGCGACCTGGGCCATGACGTACAGGAAAGTGTA
AGGAAGCGGGGCACAGGTTCACGTAATACATTTGTTCATAAGGTGAGGAC
AGGTGCTTCAGAAACGAAGAGACAGATAACGAATAGGGAATATCTTAGCT
TGCTTGCTCATTGTGACTTGTCCAGAAGAACTGTCCGCATCCGACGAAAA
TGCTTTTTGTACAATGGGAACTATTTTGTTCTGGATAACGTCACGAACGT
TGACCCTGCCATTGGGCTCTTGCGCTGTCACTGTCACGAAGGAGAGGACG
ATGTCGAACTACCGGATTGGCTCCATGTAGAACGAGAGGTGACTGGTGAA
CAAGACTATACCATGTATAGTCTTAGTGAACGTGTTGCGAAAGTCCGAAT
CAGGGAAGAAGCAATACAACGCGAGGGGCGTATCAGCGACATGGACTTTG
CAAGGAGCTTTTGA
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Coding sequence (CDS) from alignment at tig00000850_pilon:1118541..1119804+

>Ggra3697.t1 ID=Ggra3697.t1|Name=Ggra3697.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1209bp|location=Sequence derived from alignment at tig00000850_pilon:1118541..1119804+ (Gracilaria gracilis GNS1m male)
ATGACTCACTCCACCCTGCACCGTTTTGCTGCTCCACCCATGCTGGACAA
GCGCAATCCCGTATACCGCGTTGCCATAACCGGCGGTCCTTGTGCAGGTA
AAACTACCGCCTTGGCCGAGGTGTCCGAGCGTCTGCGTTCCCGTGGATTC
GGTGTGTACGTCGTCCCCGAGGCTGCCACCCTCATCTTCACTGGCGGTGC
CACTTTCGAAGGCCTCACGCCTGCACAAGTGTTGAACTTTCAGACCCAGC
TGCTTCGTACCCAGATTGCTCTGGAAGATGCCTTCGTCTCACTCGCTACC
GCCTCAAATACTCCCAGCTTTGTCTTGTGTGACCGTGGTTCCTGTGACGG
TCGTGCCTACATGACTCCTTCTATGTGGAACAAAATGCTCGTCGACAATG
GCTGGGATATGGTATCTATTCGTGATGCACGCTATGACGTCGTCGTCCAT
CTCGTCACCGCCGCCGATGGAGCCGAACCGTTCTACACCCTGGAGAACAA
CAAGACGCGTACCGAATCGCCAGAGCATGCAATTCGCCTAGACAGACGTA
CCCAGAGCGCGTGGGTTGGACATCCGCACCTCCGCATCATAGATAACCGC
ACCAACTTCCGCGAGAAGATCAATCGCGTTGATGCAAGGGTCTCCGAAAT
CGCCGGAATGCATCTCACCAAACGCATAGTTCGCAAGTTCTTGCTGAGCG
ACATTGAAGAAGAACTGTCGTTCCGTGCAGAAGAGTTCTGGGTTGAACAA
ACTTTCCTCTCTCGCGACCTGGGCCATGACGTACAGGAAAGTGTAAGGAA
GCGGGGCACAGGTTCACGTAATACATTTGTTCATAAGGTGAGGACAGGTG
CTTCAGAAACGAAGAGACAGATAACGAATAGGGAATATCTTAGCTTGCTT
GCTCATTGTGACTTGTCCAGAAGAACTGTCCGCATCCGACGAAAATGCTT
TTTGTACAATGGGAACTATTTTGTTCTGGATAACGTCACGAACGTTGACC
CTGCCATTGGGCTCTTGCGCTGTCACTGTCACGAAGGAGAGGACGATGTC
GAACTACCGGATTGGCTCCATGTAGAACGAGAGGTGACTGGTGAACAAGA
CTATACCATGTATAGTCTTAGTGAACGTGTTGCGAAAGTCCGAATCAGGG
AAGAAGCAATACAACGCGAGGGGCGTATCAGCGACATGGACTTTGCAAGG
AGCTTTTGA
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