Ggra3692.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3692.t1
Unique NameGgra3692.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length238
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1102050..1102984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMO111CT
Preferred nameVDAC2
PFAMsPorin_3
Max annot lvl2759|Eukaryota
KEGG rclassRC00588
KEGG koko:K02552,ko:K05862,ko:K13947,ko:K15040,ko:K15041
KEGG TC1.B.8.1,2.A.69.1
KEGG ReactionR01717
KEGG Pathwayko00130,ko01053,ko01100,ko01110,ko01130,ko04020,ko04022,ko04216,ko04217,ko04218,ko04621,ko04979,ko05012,ko05016,ko05161,ko05164,ko05166,ko05203,map00130,map01053,map01100,map01110,map01130,map04020,map04022,map04216,map04217,map04218,map04621,map04979,map05012,map05016,map05161,map05164,map05166,map05203
KEGG ModuleM00116
GOsGO:0000003,GO:0001662,GO:0001669,GO:0002209,GO:0003006,GO:0003008,GO:0003674,GO:0005215,GO:0005216,GO:0005244,GO:0005253,GO:0005261,GO:0005262,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005757,GO:0005759,GO:0005773,GO:0005774,GO:0005783,GO:0005791,GO:0005886,GO:0006091,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006820,GO:0006839,GO:0006851,GO:0006863,GO:0006914,GO:0006915,GO:0006950,GO:0006952,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007267,GO:0007268,GO:0007270,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007338,GO:0007339,GO:0007349,GO:0007602,GO:0007610,GO:0007611,GO:0007612,GO:0008021,GO:0008037,GO:0008150,GO:0008152,GO:0008219,GO:0008308,GO:0008324,GO:0008509,GO:0009056,GO:0009060,GO:0009266,GO:0009295,GO:0009314,GO:0009409,GO:0009416,GO:0009507,GO:0009526,GO:0009527,GO:0009536,GO:0009566,GO:0009581,GO:0009582,GO:0009583,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009735,GO:0009888,GO:0009892,GO:0009894,GO:0009941,GO:0009966,GO:0009968,GO:0009987,GO:0009988,GO:0010029,GO:0010033,GO:0010506,GO:0010646,GO:0010648,GO:0010821,GO:0010941,GO:0012501,GO:0012505,GO:0015075,GO:0015085,GO:0015103,GO:0015267,GO:0015288,GO:0015318,GO:0015698,GO:0015851,GO:0015853,GO:0015931,GO:0015980,GO:0016006,GO:0016020,GO:0016021,GO:0016043,GO:0016236,GO:0019222,GO:0019725,GO:0019867,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022412,GO:0022414,GO:0022803,GO:0022829,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0022890,GO:0023051,GO:0023052,GO:0023057,GO:0030001,GO:0030133,GO:0030141,GO:0030154,GO:0030312,GO:0030382,GO:0030855,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031323,GO:0031324,GO:0031329,GO:0031333,GO:0031410,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0032271,GO:0032272,GO:0032501,GO:0032502,GO:0032504,GO:0032592,GO:0032991,GO:0033043,GO:0033555,GO:0034220,GO:0035036,GO:0042170,GO:0042221,GO:0042592,GO:0042596,GO:0042645,GO:0042742,GO:0042802,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043207,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0044087,GO:0044237,GO:0044248,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044455,GO:0044456,GO:0044464,GO:0044703,GO:0044877,GO:0045121,GO:0045202,GO:0045333,GO:0045454,GO:0046873,GO:0046930,GO:0048232,GO:0048468,GO:0048515,GO:0048519,GO:0048523,GO:0048580,GO:0048583,GO:0048585,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050657,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051027,GO:0051128,GO:0051129,GO:0051179,GO:0051234,GO:0051239,GO:0051606,GO:0051704,GO:0051707,GO:0051716,GO:0055085,GO:0055114,GO:0060429,GO:0060548,GO:0061919,GO:0065007,GO:0065008,GO:0070013,GO:0070382,GO:0070588,GO:0070838,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072511,GO:0097223,GO:0097458,GO:0097708,GO:0098542,GO:0098573,GO:0098588,GO:0098589,GO:0098655,GO:0098656,GO:0098660,GO:0098662,GO:0098793,GO:0098796,GO:0098798,GO:0098805,GO:0098857,GO:0098916,GO:0099503,GO:0099536,GO:0099537,GO:1900140,GO:1902531,GO:1902532,GO:1903146,GO:1990542,GO:2000026,GO:2000377,GO:2000378,GO:2001233,GO:2001234,GO:2001242,GO:2001243
Evalue7.5e-16
EggNOG OGsKOG3126@1|root,KOG3126@2759|Eukaryota
EC5.4.4.2
Descriptionporin activity
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3692Ggra3692Gracilaria gracilis GNS1m malegenetig00000850_pilon 1102050..1102984 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3692.t1Ggra3692.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 1102050..1102984 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3692.t1.start1Ggra3692.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 1102050..1102052 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3692.t1.CDS1Ggra3692.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1102050..1102086 +
Ggra3692.t1.CDS2Ggra3692.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1102188..1102675 +
Ggra3692.t1.CDS3Ggra3692.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1102796..1102984 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3692.t1.exon1Ggra3692.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 1102050..1102086 +
Ggra3692.t1.exon2Ggra3692.t1.exon2Gracilaria gracilis GNS1m maleexontig00000850_pilon 1102188..1102675 +
Ggra3692.t1.exon3Ggra3692.t1.exon3Gracilaria gracilis GNS1m maleexontig00000850_pilon 1102796..1102984 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3692.t1.intron1Ggra3692.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000850_pilon 1102087..1102187 +
Ggra3692.t1.intron2Ggra3692.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000850_pilon 1102676..1102795 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3692.t1.stop1Ggra3692.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 1102982..1102984 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3692.t1 ID=Ggra3692.t1|Name=Ggra3692.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=238bp
MKQYSDIGKIAKKLLTDDYIYTNKLKLTSKTPDGVAYNITAVHTPKSDQV
AAEISAKCNVKGTTLTAKAFTGGKLPTLEAKYESCDALGRKATLTALAGK
HAREATAEFLGGPVGVKLVGDAVSQDMYASLAVALTSDKYDGFIIAGAEG
EYNINKRQFGKSNYALSVFDGKESEIAMGAAYRLDGATTIKGKLDMDGFV
ALTYLQDIRPNAKLIMSSKFDPSKLDNAKVGVSLAIE*
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spliced messenger RNA

>Ggra3692.t1 ID=Ggra3692.t1|Name=Ggra3692.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=714bp|location=Sequence derived from alignment at tig00000850_pilon:1102050..1102984+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCAGTATAGCGACATTGGCAAGATCGCCAAGAAGCTGCTTACGGA
TGATTATATCTACACTAACAAGCTAAAACTTACGTCCAAGACGCCCGATG
GCGTGGCTTATAACATCACCGCCGTGCATACGCCCAAGAGCGATCAGGTC
GCCGCCGAGATCAGTGCCAAGTGCAACGTCAAGGGCACCACCCTCACCGC
CAAAGCGTTTACGGGCGGAAAGCTCCCCACGTTAGAAGCAAAGTACGAGT
CGTGCGATGCGCTCGGTAGAAAGGCCACCCTCACCGCCTTGGCGGGCAAG
CACGCGCGCGAGGCAACCGCCGAGTTTCTGGGCGGCCCTGTGGGCGTCAA
GCTTGTGGGCGACGCCGTGTCACAGGATATGTACGCGTCGTTGGCCGTCG
CGCTCACTTCGGATAAGTACGACGGCTTCATTATTGCGGGCGCTGAGGGC
GAGTATAACATCAACAAGCGCCAGTTTGGCAAGAGCAATTACGCGCTCAG
CGTGTTTGATGGCAAggaaagtgagattgccatgggtgcggcgtatcgaC
TGGATGGTGCTACCACCATTAAGGGCAAGCTTGATATGGACGGCTTTGTT
GCGCTCACTTACCTGCAGGATATTCGACCAAACGCAAAGTTGATCATGTC
GTCCAAGTTCGATCCGAGCAAATTGGACAACGCCAAGGTGGGTGTTTCTT
TGGCCATCGAGTAG
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protein sequence of Ggra3692.t1

>Ggra3692.t1 ID=Ggra3692.t1|Name=Ggra3692.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=238bp
MKQYSDIGKIAKKLLTDDYIYTNKLKLTSKTPDGVAYNITAVHTPKSDQV
AAEISAKCNVKGTTLTAKAFTGGKLPTLEAKYESCDALGRKATLTALAGK
HAREATAEFLGGPVGVKLVGDAVSQDMYASLAVALTSDKYDGFIIAGAEG
EYNINKRQFGKSNYALSVFDGKESEIAMGAAYRLDGATTIKGKLDMDGFV
ALTYLQDIRPNAKLIMSSKFDPSKLDNAKVGVSLAIE*
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mRNA from alignment at tig00000850_pilon:1102050..1102984+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3692.t1 ID=Ggra3692.t1|Name=Ggra3692.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=935bp|location=Sequence derived from alignment at tig00000850_pilon:1102050..1102984+ (Gracilaria gracilis GNS1m male)
ATGAAGCAGTATAGCGACATTGGCAAGATCGCCAAGAGTATGTCGTCGCC
CCGCGCTTTTCGTTGCACGCCCTTGCTACAGTACTGACCtgcgtgtgtgt
gtgtgtttgtgtgtgtgcctgttgtTACGCGTCGGTAGAGCTGCTTACGG
ATGATTATATCTACACTAACAAGCTAAAACTTACGTCCAAGACGCCCGAT
GGCGTGGCTTATAACATCACCGCCGTGCATACGCCCAAGAGCGATCAGGT
CGCCGCCGAGATCAGTGCCAAGTGCAACGTCAAGGGCACCACCCTCACCG
CCAAAGCGTTTACGGGCGGAAAGCTCCCCACGTTAGAAGCAAAGTACGAG
TCGTGCGATGCGCTCGGTAGAAAGGCCACCCTCACCGCCTTGGCGGGCAA
GCACGCGCGCGAGGCAACCGCCGAGTTTCTGGGCGGCCCTGTGGGCGTCA
AGCTTGTGGGCGACGCCGTGTCACAGGATATGTACGCGTCGTTGGCCGTC
GCGCTCACTTCGGATAAGTACGACGGCTTCATTATTGCGGGCGCTGAGGG
CGAGTATAACATCAACAAGCGCCAGTTTGGCAAGAGCAATTACGCGCTCA
GCGTGTTTGATGGCAAggaaagtgaggtgtctttacatgtcaccgataag
atgcagagagccatgctcagttactcgcatcatgtgcgacatggcttttc
ggccgccgcgcagattgcgcacagcttttctgccgacagcactcagattg
ccatgggtgcggcgtatcgaCTGGATGGTGCTACCACCATTAAGGGCAAG
CTTGATATGGACGGCTTTGTTGCGCTCACTTACCTGCAGGATATTCGACC
AAACGCAAAGTTGATCATGTCGTCCAAGTTCGATCCGAGCAAATTGGACA
ACGCCAAGGTGGGTGTTTCTTTGGCCATCGAGTAG
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Coding sequence (CDS) from alignment at tig00000850_pilon:1102050..1102984+

>Ggra3692.t1 ID=Ggra3692.t1|Name=Ggra3692.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=714bp|location=Sequence derived from alignment at tig00000850_pilon:1102050..1102984+ (Gracilaria gracilis GNS1m male)
ATGAAGCAGTATAGCGACATTGGCAAGATCGCCAAGAAGCTGCTTACGGA
TGATTATATCTACACTAACAAGCTAAAACTTACGTCCAAGACGCCCGATG
GCGTGGCTTATAACATCACCGCCGTGCATACGCCCAAGAGCGATCAGGTC
GCCGCCGAGATCAGTGCCAAGTGCAACGTCAAGGGCACCACCCTCACCGC
CAAAGCGTTTACGGGCGGAAAGCTCCCCACGTTAGAAGCAAAGTACGAGT
CGTGCGATGCGCTCGGTAGAAAGGCCACCCTCACCGCCTTGGCGGGCAAG
CACGCGCGCGAGGCAACCGCCGAGTTTCTGGGCGGCCCTGTGGGCGTCAA
GCTTGTGGGCGACGCCGTGTCACAGGATATGTACGCGTCGTTGGCCGTCG
CGCTCACTTCGGATAAGTACGACGGCTTCATTATTGCGGGCGCTGAGGGC
GAGTATAACATCAACAAGCGCCAGTTTGGCAAGAGCAATTACGCGCTCAG
CGTGTTTGATGGCAAggaaagtgagattgccatgggtgcggcgtatcgaC
TGGATGGTGCTACCACCATTAAGGGCAAGCTTGATATGGACGGCTTTGTT
GCGCTCACTTACCTGCAGGATATTCGACCAAACGCAAAGTTGATCATGTC
GTCCAAGTTCGATCCGAGCAAATTGGACAACGCCAAGGTGGGTGTTTCTT
TGGCCATCGAGTAG
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