Ggra369.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra369.t1
Unique NameGgra369.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length404
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000950_piloncontigtig00000950_pilon:179969..181180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702863.1
PFAMsKH_1,STAR_dimer
Max annot lvl2759|Eukaryota
KEGG koko:K14945
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0008150,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048577,GO:0048579,GO:0048580,GO:0048581,GO:0048583,GO:0048585,GO:0048586,GO:0048587,GO:0050789,GO:0050793,GO:0051093,GO:0051239,GO:0051241,GO:0065007,GO:0097159,GO:1901363,GO:2000026,GO:2000028,GO:2000241,GO:2000242
Evalue2.23e-54
EggNOG OGsCOG5176@1|root,KOG1588@2759|Eukaryota
DescriptionRNA binding
COG categoryA
BRITEko00000,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra369Ggra369Gracilaria gracilis GNS1m malegenetig00000950_pilon 179969..181180 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra369.t1.start1Ggra369.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000950_pilon 179969..179971 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra369.t1.CDS1Ggra369.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000950_pilon 179969..181180 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra369.t1.exon1Ggra369.t1.exon1Gracilaria gracilis GNS1m maleexontig00000950_pilon 179969..181180 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra369.t1.stop1Ggra369.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000950_pilon 181178..181180 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra369.t1Ggra369.t1Gracilaria gracilis GNS1m malepolypeptidetig00000950_pilon 179969..181180 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra369.t1 ID=Ggra369.t1|Name=Ggra369.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=404bp
MATRALFLPSPASSPPPARTPSRTPSPSPRPAARLLQQLLRERDAIVPLR
AALPHLCALLDAEIARCRAASAPSSPRRRVKLRVPADKFPDYNFVGRLLG
PRGTTLKTLERDSRCRIMIRGKGSIRKDKEPDVRGKPGWEHVFNEPLHVV
IEAPDCLHQQAAAAALARAADAVELLLVPVPEERDALKRHQLRALAIMNG
TFRGALPYPSEGDTLPPLPSPILPSYDSAISMLCSNTSPLPQLACSAANA
PKSSLPHLSSSSSPSSSPLSAKLLRAAALDELATSSVGDDSAESSQTSEQ
EEAPPASHVGACAGTALGAGGFIGREFYNGAFSNAGVLGSSTPSSTRTAW
QHTPCSSPSAPVDSSAAAAAAAAAASCSFDGPSAHIVTCSATVTALKRAD
DLY*
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spliced messenger RNA

>Ggra369.t1 ID=Ggra369.t1|Name=Ggra369.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1212bp|location=Sequence derived from alignment at tig00000950_pilon:179969..181180+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACGCGCGCGCTGTTCCTGCCGTCGCCGGCGTCGTCGCCGCCGCC
GGCGCGCACGCCGTCGCGCACGCCGTCGCCGTCGCCGCGCCCGGCGGCGC
GTCTGCTTCAGCAGCTGCTGCGCGAGCGCGACGCCATCGTGCCGCTGCGC
GCCGCGCTACCGCACCTCTGCGCGCTGCTCGACGCCGAGATCGCGCGCTG
TCGCGCCGCAAGCGCGCCGTCGTCGCCGCGTCGTCGCGTCAAGCTGCGCG
TCCCCGCCGACAAGTTCCCGGACTACAACTTTGTGGGCCGCCTGCTCGGC
CCGCGCGGCACCACGCTCAAGACGCTGGAACGCGACTCGCGCTGCCGCAT
CATGATCCGCGGAAAGGGTAGCATCCGCAAGGACAAGGAGCCCGACGTGC
GCGGAAAGCCCGGCTGGGAGCACGTGTTCAACGAGCCGTTGCACGTCGTT
ATCGAGGCGCCCGATTGCTTGCATCAACAGgccgctgctgccgcgctggc
gcgcgccgccgacgccgtggagctgctgctTGTGCCCGTGCCCGAGGAAC
GTGATGCGCTTAAGAGACATCAGCTTCGCGCGCTTGCCATCATGAACGGC
ACCTTTCGTGGCGCCTTGCCCTACCCGTCGGAGGGCGACACGCtgccgcc
gttaccgtcgccaatactgccgtcgtatgactctgccatctccatgctgt
gctccaacacaagtccgctgccgcagcttgcttgctccgccgccaatgcg
ccaaagtcgtcgctgccgcacttgtcgtcgtcgtcgtcgccgtcgtcgtc
gccgctcagcgcaaagctgctgcgcgccgccgcgctggacgagctggcCA
CCAGCTCGGTGGGCGACGACAGCGCCGAGTCGTCGCAGACCTCCGAGCAA
GAAGAGGCGCCGCCCGCCTCGCACGTCGGCGCGTGCGCCGGCACGGCGCT
CGGCGCCGGCGGTTTCATCGGTCGCGAGTTCTACAACGGCGCGTTTTCTA
ACGCCGGCGTGCTGGGCTCTTCGACGCCGTCGTCCACTCGCACCGCGTGG
CAACACAcgccgtgctcgtcgccgtctgcccccgtcgactcctccgccgc
cgccgccgccgctgctgcggccgcTTCTTGCTCGTTTGATGGCCCTTCTG
CACATATTGTAACGTGCTCTGCTACTGTAACTGCGCTTAAGCGCGCTGAT
GATTTGTACTAA
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protein sequence of Ggra369.t1

>Ggra369.t1 ID=Ggra369.t1|Name=Ggra369.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=404bp
MATRALFLPSPASSPPPARTPSRTPSPSPRPAARLLQQLLRERDAIVPLR
AALPHLCALLDAEIARCRAASAPSSPRRRVKLRVPADKFPDYNFVGRLLG
PRGTTLKTLERDSRCRIMIRGKGSIRKDKEPDVRGKPGWEHVFNEPLHVV
IEAPDCLHQQAAAAALARAADAVELLLVPVPEERDALKRHQLRALAIMNG
TFRGALPYPSEGDTLPPLPSPILPSYDSAISMLCSNTSPLPQLACSAANA
PKSSLPHLSSSSSPSSSPLSAKLLRAAALDELATSSVGDDSAESSQTSEQ
EEAPPASHVGACAGTALGAGGFIGREFYNGAFSNAGVLGSSTPSSTRTAW
QHTPCSSPSAPVDSSAAAAAAAAAASCSFDGPSAHIVTCSATVTALKRAD
DLY*
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mRNA from alignment at tig00000950_pilon:179969..181180+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra369.t1 ID=Ggra369.t1|Name=Ggra369.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1212bp|location=Sequence derived from alignment at tig00000950_pilon:179969..181180+ (Gracilaria gracilis GNS1m male)
ATGGCCACGCGCGCGCTGTTCCTGCCGTCGCCGGCGTCGTCGCCGCCGCC
GGCGCGCACGCCGTCGCGCACGCCGTCGCCGTCGCCGCGCCCGGCGGCGC
GTCTGCTTCAGCAGCTGCTGCGCGAGCGCGACGCCATCGTGCCGCTGCGC
GCCGCGCTACCGCACCTCTGCGCGCTGCTCGACGCCGAGATCGCGCGCTG
TCGCGCCGCAAGCGCGCCGTCGTCGCCGCGTCGTCGCGTCAAGCTGCGCG
TCCCCGCCGACAAGTTCCCGGACTACAACTTTGTGGGCCGCCTGCTCGGC
CCGCGCGGCACCACGCTCAAGACGCTGGAACGCGACTCGCGCTGCCGCAT
CATGATCCGCGGAAAGGGTAGCATCCGCAAGGACAAGGAGCCCGACGTGC
GCGGAAAGCCCGGCTGGGAGCACGTGTTCAACGAGCCGTTGCACGTCGTT
ATCGAGGCGCCCGATTGCTTGCATCAACAGgccgctgctgccgcgctggc
gcgcgccgccgacgccgtggagctgctgctTGTGCCCGTGCCCGAGGAAC
GTGATGCGCTTAAGAGACATCAGCTTCGCGCGCTTGCCATCATGAACGGC
ACCTTTCGTGGCGCCTTGCCCTACCCGTCGGAGGGCGACACGCtgccgcc
gttaccgtcgccaatactgccgtcgtatgactctgccatctccatgctgt
gctccaacacaagtccgctgccgcagcttgcttgctccgccgccaatgcg
ccaaagtcgtcgctgccgcacttgtcgtcgtcgtcgtcgccgtcgtcgtc
gccgctcagcgcaaagctgctgcgcgccgccgcgctggacgagctggcCA
CCAGCTCGGTGGGCGACGACAGCGCCGAGTCGTCGCAGACCTCCGAGCAA
GAAGAGGCGCCGCCCGCCTCGCACGTCGGCGCGTGCGCCGGCACGGCGCT
CGGCGCCGGCGGTTTCATCGGTCGCGAGTTCTACAACGGCGCGTTTTCTA
ACGCCGGCGTGCTGGGCTCTTCGACGCCGTCGTCCACTCGCACCGCGTGG
CAACACAcgccgtgctcgtcgccgtctgcccccgtcgactcctccgccgc
cgccgccgccgctgctgcggccgcTTCTTGCTCGTTTGATGGCCCTTCTG
CACATATTGTAACGTGCTCTGCTACTGTAACTGCGCTTAAGCGCGCTGAT
GATTTGTACTAA
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Coding sequence (CDS) from alignment at tig00000950_pilon:179969..181180+

>Ggra369.t1 ID=Ggra369.t1|Name=Ggra369.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1212bp|location=Sequence derived from alignment at tig00000950_pilon:179969..181180+ (Gracilaria gracilis GNS1m male)
ATGGCCACGCGCGCGCTGTTCCTGCCGTCGCCGGCGTCGTCGCCGCCGCC
GGCGCGCACGCCGTCGCGCACGCCGTCGCCGTCGCCGCGCCCGGCGGCGC
GTCTGCTTCAGCAGCTGCTGCGCGAGCGCGACGCCATCGTGCCGCTGCGC
GCCGCGCTACCGCACCTCTGCGCGCTGCTCGACGCCGAGATCGCGCGCTG
TCGCGCCGCAAGCGCGCCGTCGTCGCCGCGTCGTCGCGTCAAGCTGCGCG
TCCCCGCCGACAAGTTCCCGGACTACAACTTTGTGGGCCGCCTGCTCGGC
CCGCGCGGCACCACGCTCAAGACGCTGGAACGCGACTCGCGCTGCCGCAT
CATGATCCGCGGAAAGGGTAGCATCCGCAAGGACAAGGAGCCCGACGTGC
GCGGAAAGCCCGGCTGGGAGCACGTGTTCAACGAGCCGTTGCACGTCGTT
ATCGAGGCGCCCGATTGCTTGCATCAACAGgccgctgctgccgcgctggc
gcgcgccgccgacgccgtggagctgctgctTGTGCCCGTGCCCGAGGAAC
GTGATGCGCTTAAGAGACATCAGCTTCGCGCGCTTGCCATCATGAACGGC
ACCTTTCGTGGCGCCTTGCCCTACCCGTCGGAGGGCGACACGCtgccgcc
gttaccgtcgccaatactgccgtcgtatgactctgccatctccatgctgt
gctccaacacaagtccgctgccgcagcttgcttgctccgccgccaatgcg
ccaaagtcgtcgctgccgcacttgtcgtcgtcgtcgtcgccgtcgtcgtc
gccgctcagcgcaaagctgctgcgcgccgccgcgctggacgagctggcCA
CCAGCTCGGTGGGCGACGACAGCGCCGAGTCGTCGCAGACCTCCGAGCAA
GAAGAGGCGCCGCCCGCCTCGCACGTCGGCGCGTGCGCCGGCACGGCGCT
CGGCGCCGGCGGTTTCATCGGTCGCGAGTTCTACAACGGCGCGTTTTCTA
ACGCCGGCGTGCTGGGCTCTTCGACGCCGTCGTCCACTCGCACCGCGTGG
CAACACAcgccgtgctcgtcgccgtctgcccccgtcgactcctccgccgc
cgccgccgccgctgctgcggccgcTTCTTGCTCGTTTGATGGCCCTTCTG
CACATATTGTAACGTGCTCTGCTACTGTAACTGCGCTTAAGCGCGCTGAT
GATTTGTACTAA
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