Ggra3689.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3689.t1
Unique NameGgra3689.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length457
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1094150..1095520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog483219.LILAB_02990
PFAMsDUF1298,WES_acyltransf
Max annot lvl28221|Deltaproteobacteria
KEGG rclassRC00004,RC00041
KEGG koko:K00635
KEGG ReactionR02251
KEGG Pathwayko00561,ko01100,map00561,map01100
KEGG ModuleM00089
Evalue2.3e-32
EggNOG OGsCOG1020@1|root,COG1020@2|Bacteria,1N7HY@1224|Proteobacteria,437XQ@68525|delta/epsilon subdivisions,2X37P@28221|Deltaproteobacteria,2YUR1@29|Myxococcales
EC2.3.1.20
DescriptionProtein of unknown function (DUF1298)
COG categoryQ
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3689Ggra3689Gracilaria gracilis GNS1m malegenetig00000850_pilon 1094150..1095520 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3689.t1.stop1Ggra3689.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 1094150..1094152 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3689.t1.CDS1Ggra3689.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1094150..1095520 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3689.t1.exon1Ggra3689.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 1094150..1095520 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3689.t1.start1Ggra3689.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 1095518..1095520 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3689.t1Ggra3689.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 1094150..1095520 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3689.t1 ID=Ggra3689.t1|Name=Ggra3689.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=457bp
MCEPPPAAAAARKREKWRKLAPLERLMLDQRAGAKQDVITICVSLSSLLS
VAELQRSVLPRFLSHPRFRSALSKRAGAPRLQLDPDFDAASPQITAYHVV
QEPVIPHALPEHHQLAAFNARLNRILSAALDLSRPLWRLYVFPSWSLVAD
ARPASTTLVLRVHHSLSDGIALVKYFLARVVDADPSAPDLQLRPPRRPPR
PFVQAVADTVGDVTKSLLVPFRADTKTAFTRPKQNNFNHCALLSPPSASV
SQLKAAAKLRNATLNDLLMAAFAGAVRAYLSDSAQPVNKLRNFHAAMPFN
RHVFADFRDQDVRNQLAMLPVSLPVHLEHAEQRLQACVREMNRVKRSVQP
HLALAGMNVLAVLPLALRRLAWRRLSKSASVLFSNVPGPASTVRVQGVPV
QSVYVFPPIDSNTTVNIAMFSYDDSLFVAVSGDSNRLSDPHGLIQHFHHQ
LNLYLG*
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spliced messenger RNA

>Ggra3689.t1 ID=Ggra3689.t1|Name=Ggra3689.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1371bp|location=Sequence derived from alignment at tig00000850_pilon:1094150..1095520- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGAGCCGCCGCCCGCCGCCGCCGCCGCGCGCAAGCGCGAAAAGTG
GCGCAAGTTGGCGCCGCTCGAGCGGCTCATGCTGGACCAGCGCGCCGGCG
CCAAGCAGGACGTCATCACCATCTGCGTGTCGCTGTCGTCGCTGCTCTCC
GTCGCGGAGCTACAGCGCAGCGTGTTGCCGCGCTTCCTGTCGCACCCGCG
CTTCCGCAGCGCGCTGTCCAAGCGCGCTGGCGCGCCGCGCTTGCAGCTGG
ACCCCGACTTCGACGCCGCGTCGCCGCAAATCACCGCGTACCACGTCGTG
CAGGAGCCCGTCATCCCGCACGCGCTCCCGGAGCACCACCAGCTCGCCGC
CTTCAACGCCCGCCTCAACCGCATCCTGTCCGCCGCCCTGGACCTGTCGC
GCCCGCTGTGGCGCCTGTACGTATTTCCGAGCTGGTCGCTCGTCGCCGAC
GCGCGCCCCGCCTCCACCACCCTCGTGCTGCGCGTGCACCACAGCCTGTC
GGACGGCATTGCGCTCGTCAAGTACTTTCTCGCGCGCGTTGTCGATGCCG
ACCCGTCCGCGCCCGACTTGCAACTCCGCCCGCCGCGCCGTCCGCCGCGC
CCATTCGTTCAGGCCGTTGCTGACACTGTGGGCGATGTCACCAAGTCGCT
GTTGGTGCCTTTCCGTGCCGATACCAAGACCGCCTTCACGCGCCCCAAGC
AGAACAACTTCAACCACTGCGCCTTGCTGTCGCCGCCGTCCGCCTCCGTC
TCGCAGCTCAAGGCCGCCGCCAAGCTCAGAAACGCCACGCTCAACGACCT
GCTCATGGCCGCGTTTGCCGGCGCCGTTCGCGCCTACTTGAGCGACAGCG
CGCAGCCTGTCAACAAGCTGCGCAACTTTCATGCCGCCATGCCGTTCAAC
CGCCACGTATTCGCCGACTTTCGCGACCAAGACGTGCGCAATCAGCTCGC
CATGTTGCCGGTTTCGCTCCCCGTGCATCTTGAGCACGCCGAACAGCGGC
TGCAAGCGTGTGTTCGCGAGATGAATCGCGTCAAACGCAGCGTGCAGCCG
CACTTGGCGCTGGCTGGAATGAACGTGCTCGCCGTGTTGCCGCTTGCGTT
GAGACGGCTCGCTTGGCGCCGTCTTAGCAAATCGGCCAGCGTTTTGTTCT
CCAATGTGCCCGGACCCGCTTCTACCGTGCGCGTTCAAGGCGTGCCCGTG
CAAAGCGTGTATGTGTTCCCTCCGATTGACTCCAATACCACGGTCAACAT
TGCCATGTTCTCATACGATGACTCTCTGTTTGTCGCCGTTTCTGGAGATT
CGAATCGCCTTTCCGATCCGCATGGCCTGATCCAACATTTCCACCATCAA
CTTAACCTGTACTTGGGGTGA
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protein sequence of Ggra3689.t1

>Ggra3689.t1 ID=Ggra3689.t1|Name=Ggra3689.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=457bp
MCEPPPAAAAARKREKWRKLAPLERLMLDQRAGAKQDVITICVSLSSLLS
VAELQRSVLPRFLSHPRFRSALSKRAGAPRLQLDPDFDAASPQITAYHVV
QEPVIPHALPEHHQLAAFNARLNRILSAALDLSRPLWRLYVFPSWSLVAD
ARPASTTLVLRVHHSLSDGIALVKYFLARVVDADPSAPDLQLRPPRRPPR
PFVQAVADTVGDVTKSLLVPFRADTKTAFTRPKQNNFNHCALLSPPSASV
SQLKAAAKLRNATLNDLLMAAFAGAVRAYLSDSAQPVNKLRNFHAAMPFN
RHVFADFRDQDVRNQLAMLPVSLPVHLEHAEQRLQACVREMNRVKRSVQP
HLALAGMNVLAVLPLALRRLAWRRLSKSASVLFSNVPGPASTVRVQGVPV
QSVYVFPPIDSNTTVNIAMFSYDDSLFVAVSGDSNRLSDPHGLIQHFHHQ
LNLYLG*
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mRNA from alignment at tig00000850_pilon:1094150..1095520-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3689.t1 ID=Ggra3689.t1|Name=Ggra3689.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1371bp|location=Sequence derived from alignment at tig00000850_pilon:1094150..1095520- (Gracilaria gracilis GNS1m male)
ATGTGCGAGCCGCCGCCCGCCGCCGCCGCCGCGCGCAAGCGCGAAAAGTG
GCGCAAGTTGGCGCCGCTCGAGCGGCTCATGCTGGACCAGCGCGCCGGCG
CCAAGCAGGACGTCATCACCATCTGCGTGTCGCTGTCGTCGCTGCTCTCC
GTCGCGGAGCTACAGCGCAGCGTGTTGCCGCGCTTCCTGTCGCACCCGCG
CTTCCGCAGCGCGCTGTCCAAGCGCGCTGGCGCGCCGCGCTTGCAGCTGG
ACCCCGACTTCGACGCCGCGTCGCCGCAAATCACCGCGTACCACGTCGTG
CAGGAGCCCGTCATCCCGCACGCGCTCCCGGAGCACCACCAGCTCGCCGC
CTTCAACGCCCGCCTCAACCGCATCCTGTCCGCCGCCCTGGACCTGTCGC
GCCCGCTGTGGCGCCTGTACGTATTTCCGAGCTGGTCGCTCGTCGCCGAC
GCGCGCCCCGCCTCCACCACCCTCGTGCTGCGCGTGCACCACAGCCTGTC
GGACGGCATTGCGCTCGTCAAGTACTTTCTCGCGCGCGTTGTCGATGCCG
ACCCGTCCGCGCCCGACTTGCAACTCCGCCCGCCGCGCCGTCCGCCGCGC
CCATTCGTTCAGGCCGTTGCTGACACTGTGGGCGATGTCACCAAGTCGCT
GTTGGTGCCTTTCCGTGCCGATACCAAGACCGCCTTCACGCGCCCCAAGC
AGAACAACTTCAACCACTGCGCCTTGCTGTCGCCGCCGTCCGCCTCCGTC
TCGCAGCTCAAGGCCGCCGCCAAGCTCAGAAACGCCACGCTCAACGACCT
GCTCATGGCCGCGTTTGCCGGCGCCGTTCGCGCCTACTTGAGCGACAGCG
CGCAGCCTGTCAACAAGCTGCGCAACTTTCATGCCGCCATGCCGTTCAAC
CGCCACGTATTCGCCGACTTTCGCGACCAAGACGTGCGCAATCAGCTCGC
CATGTTGCCGGTTTCGCTCCCCGTGCATCTTGAGCACGCCGAACAGCGGC
TGCAAGCGTGTGTTCGCGAGATGAATCGCGTCAAACGCAGCGTGCAGCCG
CACTTGGCGCTGGCTGGAATGAACGTGCTCGCCGTGTTGCCGCTTGCGTT
GAGACGGCTCGCTTGGCGCCGTCTTAGCAAATCGGCCAGCGTTTTGTTCT
CCAATGTGCCCGGACCCGCTTCTACCGTGCGCGTTCAAGGCGTGCCCGTG
CAAAGCGTGTATGTGTTCCCTCCGATTGACTCCAATACCACGGTCAACAT
TGCCATGTTCTCATACGATGACTCTCTGTTTGTCGCCGTTTCTGGAGATT
CGAATCGCCTTTCCGATCCGCATGGCCTGATCCAACATTTCCACCATCAA
CTTAACCTGTACTTGGGGTGA
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Coding sequence (CDS) from alignment at tig00000850_pilon:1094150..1095520-

>Ggra3689.t1 ID=Ggra3689.t1|Name=Ggra3689.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1371bp|location=Sequence derived from alignment at tig00000850_pilon:1094150..1095520- (Gracilaria gracilis GNS1m male)
ATGTGCGAGCCGCCGCCCGCCGCCGCCGCCGCGCGCAAGCGCGAAAAGTG
GCGCAAGTTGGCGCCGCTCGAGCGGCTCATGCTGGACCAGCGCGCCGGCG
CCAAGCAGGACGTCATCACCATCTGCGTGTCGCTGTCGTCGCTGCTCTCC
GTCGCGGAGCTACAGCGCAGCGTGTTGCCGCGCTTCCTGTCGCACCCGCG
CTTCCGCAGCGCGCTGTCCAAGCGCGCTGGCGCGCCGCGCTTGCAGCTGG
ACCCCGACTTCGACGCCGCGTCGCCGCAAATCACCGCGTACCACGTCGTG
CAGGAGCCCGTCATCCCGCACGCGCTCCCGGAGCACCACCAGCTCGCCGC
CTTCAACGCCCGCCTCAACCGCATCCTGTCCGCCGCCCTGGACCTGTCGC
GCCCGCTGTGGCGCCTGTACGTATTTCCGAGCTGGTCGCTCGTCGCCGAC
GCGCGCCCCGCCTCCACCACCCTCGTGCTGCGCGTGCACCACAGCCTGTC
GGACGGCATTGCGCTCGTCAAGTACTTTCTCGCGCGCGTTGTCGATGCCG
ACCCGTCCGCGCCCGACTTGCAACTCCGCCCGCCGCGCCGTCCGCCGCGC
CCATTCGTTCAGGCCGTTGCTGACACTGTGGGCGATGTCACCAAGTCGCT
GTTGGTGCCTTTCCGTGCCGATACCAAGACCGCCTTCACGCGCCCCAAGC
AGAACAACTTCAACCACTGCGCCTTGCTGTCGCCGCCGTCCGCCTCCGTC
TCGCAGCTCAAGGCCGCCGCCAAGCTCAGAAACGCCACGCTCAACGACCT
GCTCATGGCCGCGTTTGCCGGCGCCGTTCGCGCCTACTTGAGCGACAGCG
CGCAGCCTGTCAACAAGCTGCGCAACTTTCATGCCGCCATGCCGTTCAAC
CGCCACGTATTCGCCGACTTTCGCGACCAAGACGTGCGCAATCAGCTCGC
CATGTTGCCGGTTTCGCTCCCCGTGCATCTTGAGCACGCCGAACAGCGGC
TGCAAGCGTGTGTTCGCGAGATGAATCGCGTCAAACGCAGCGTGCAGCCG
CACTTGGCGCTGGCTGGAATGAACGTGCTCGCCGTGTTGCCGCTTGCGTT
GAGACGGCTCGCTTGGCGCCGTCTTAGCAAATCGGCCAGCGTTTTGTTCT
CCAATGTGCCCGGACCCGCTTCTACCGTGCGCGTTCAAGGCGTGCCCGTG
CAAAGCGTGTATGTGTTCCCTCCGATTGACTCCAATACCACGGTCAACAT
TGCCATGTTCTCATACGATGACTCTCTGTTTGTCGCCGTTTCTGGAGATT
CGAATCGCCTTTCCGATCCGCATGGCCTGATCCAACATTTCCACCATCAA
CTTAACCTGTACTTGGGGTGA
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