Ggra3683.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3683.t1
Unique Name	Ggra3683.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	542

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000850_pilon	contig	tig00000850_pilon:1077091..1078716 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	38833.XP_003060326.1
PFAMs	Exo_endo_phos
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K18764,ko:K19612
Evalue	3.69e-91
EggNOG OGs	COG5239@1\|root,KOG0620@2759\|Eukaryota
EC	3.1.13.4
Description	poly(A)-specific ribonuclease activity
COG category	A
BRITE	ko00000,ko01000,ko03019,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3683	Ggra3683	Gracilaria gracilis GNS1m male	gene	tig00000850_pilon 1077091..1078716 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3683.t1.start1	Ggra3683.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000850_pilon 1077091..1077093 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3683.t1.CDS1	Ggra3683.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000850_pilon 1077091..1078716 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3683.t1.exon1	Ggra3683.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000850_pilon 1077091..1078716 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3683.t1.stop1	Ggra3683.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000850_pilon 1078714..1078716 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3683.t1	Ggra3683.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000850_pilon 1077091..1078716 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000850_pilon:1077091..1078716+
coding sequence from alignment at tig00000850_pilon:1077091..1078716+

mRNA sequence

>Ggra3683.t1 ID=Ggra3683.t1|Name=Ggra3683.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=542bp
MSYNLSPTRPRPYATPSDSLPLPATTTNKKSSFSFKPPNHLVFAHQSHAF
FSDRLRTITASNAVTNSTTMLPTRARAAFALSPATSLPFSRPTVHAATPS
FPLWKPPAPWRPFSNLRPFPRAPSLSTPPKMQRGTPRNNGPPNANGPSDF
GERELFASSPELEQLAIKSSDAPILTRIVSYNVLSSSLAADSHFPDCEPA
NLKPATRLKRLLIKLEAPVASRSIICLQEVSLAWSGPLHTFFANRGFHLL
LASHGSYFNGYMGEGLAFPLDLYEAVDLHIERLTDFIRWPQGPKLVGVPG
FFSEVRSRLIRAMQALAGFPKPSRYAKREPWTHARARQNRFIFARLRSRT
NGAKICVGTYHMPCIFWSPPVMMIHSALVVSRFQKLCGEDYGVLAGDFNI
KPTDESYAMILRGAVDEQHRDFPPNAPDGSAASSWFPKLLAPMKSAYREV
LGDEPDFTNYAKVESQPLFVETLDYLFCTSDVDVVDVIRLPKREGVQGPY
PDALEPSDHVMIGATLRLPAASRQTQRKKESVGAAAAQDGS*

spliced messenger RNA

>Ggra3683.t1 ID=Ggra3683.t1|Name=Ggra3683.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1626bp|location=Sequence derived from alignment at tig00000850_pilon:1077091..1078716+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTACAATCTGTCCCCAACACGCCCCCGTCCTTATGCAACGCCCTC
AGACTCTCTTCCGTTGCCCGCCACCACCACCAACAAAAAGTCCTCCTTCT
CCTTCAAACCTCCCAACCATCTAGTATTCGCCCATCAATCACACGCCTTT
TTTTCCGATCGTCTGCGAACCATAACCGCTTCCAACGCCGTCACCAACTC
CACCACCATGCTTCCCACGCGCGCCAGAGCTGCCTTTGCCCTATCTCCCG
CCACCTCGCTCCCCTTCTCGCGCCCGACCGTGCACGCCGCCACCCCATCC
TTTCCGCTATGGAAGCCGCCCGCCCCATGGCGCCCCTTCTCCAACCTCCG
TCCCTTCCCTCGCGCCCCTTCCCTCTCCACGCCGCCCAAAATGCAGCGCG
GCACGCCGCGCAATAACGGACCGCCCAACGCTAACGGACCGTCTGATTTC
GGCGAGCGCGAACTGTTTGCTTCTTCTCCCGAGCTGGAGCAGCTCGCTAT
CAAGTCTTCCGACGCCCCCATTCTCACCCGCATCGTGTCGTACAACGTGC
TTTCGTCCTCGTTGGCTGCCGACTCCCATTTTCCGGACTGCGAGCCTGCA
AACTTGAAGCCAGCCACGCGCCTCAAGCGCCTGCTCATCAAGTTGGAAGC
GCCTGTTGCCTCCAGGTCTATCATCTGCTTGCAAGAGGTTTCGCTGGCGT
GGAGTGGTCCATTGCACACCTTTTTCGCCAACCGCGGCTTCCATCTGCTC
CTGGCCTCGCATGGCTCCTACTTTAACGGCTACATGGGCGAGGGCCTGGC
CTTCCCGCTGGATCTCTACGAAGCGGTTGATCTGCACATCGAACGACTCA
CAGACTTTATTCGCTGGCCACAGGGTCCGAAACTGGTCGGCGTGCCGGGC
TTCTTCTCGGAAGTGCGCTCGCGACTCATCAGGGCGATGCAAGCGCTGGC
GGGCTTTCCAAAACCGTCGCGGTACGCGAAGCGAGAGCCGTGGACACACG
CAAGAGCGAGGCAAAACCGCTTCATCTTCGCTCGCTTGCGTTCGCGCACC
AACGGCGCAAAGATCTGCGTGGGCACGTATCACATGCCGTGCATTTTCTG
GTCGCCGCCCGTCATGATGATTCATTCTGCGCTGGTGGTTAGTCGCTTCC
AGAAATTGTGCGGCGAGGACTACGGTGTGTTGGCGGGCGACTTTAACATC
AAGCCCACTGACGAGTCGTATGCTATGATTCTGCGGGGGGCGGTTGATGA
GCAACATCGCGACTTTCCGCCTAATGCGCCGGATGGATCGGCTGCTTCGT
CGTGGTTTCCCAAGCTGTTGGCGCCGATGAAGAGTGCTTATCGGGAGGTT
CTTGGAGATGAACCGGATTTTACAAACTACGCAAAGGTTGAAAGTCAACC
TTTGTTTGTAGAAACGCTTGACTACCTGTTCTGCACATCGGATGTGGACG
TTGTGGACGTGATCCGATTGCCGAAGAGAGAGGGTGTACAGGGTCCGTAT
CCCGACGCGCTGGAACCGTCTGACCACGTGATGATTGGGGCGACGCTGAG
ACTACCGGCGGCGTCTCGCCAGACGCAGCGCAAGAAGGAGAGTGTCGGCG
CTGCGGCTGCTCAGGATGGATCTTGA

protein sequence of Ggra3683.t1

>Ggra3683.t1 ID=Ggra3683.t1|Name=Ggra3683.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=542bp
MSYNLSPTRPRPYATPSDSLPLPATTTNKKSSFSFKPPNHLVFAHQSHAF
FSDRLRTITASNAVTNSTTMLPTRARAAFALSPATSLPFSRPTVHAATPS
FPLWKPPAPWRPFSNLRPFPRAPSLSTPPKMQRGTPRNNGPPNANGPSDF
GERELFASSPELEQLAIKSSDAPILTRIVSYNVLSSSLAADSHFPDCEPA
NLKPATRLKRLLIKLEAPVASRSIICLQEVSLAWSGPLHTFFANRGFHLL
LASHGSYFNGYMGEGLAFPLDLYEAVDLHIERLTDFIRWPQGPKLVGVPG
FFSEVRSRLIRAMQALAGFPKPSRYAKREPWTHARARQNRFIFARLRSRT
NGAKICVGTYHMPCIFWSPPVMMIHSALVVSRFQKLCGEDYGVLAGDFNI
KPTDESYAMILRGAVDEQHRDFPPNAPDGSAASSWFPKLLAPMKSAYREV
LGDEPDFTNYAKVESQPLFVETLDYLFCTSDVDVVDVIRLPKREGVQGPY
PDALEPSDHVMIGATLRLPAASRQTQRKKESVGAAAAQDGS*

mRNA from alignment at tig00000850_pilon:1077091..1078716+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3683.t1 ID=Ggra3683.t1|Name=Ggra3683.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1626bp|location=Sequence derived from alignment at tig00000850_pilon:1077091..1078716+ (Gracilaria gracilis GNS1m male)
ATGAGCTACAATCTGTCCCCAACACGCCCCCGTCCTTATGCAACGCCCTC
AGACTCTCTTCCGTTGCCCGCCACCACCACCAACAAAAAGTCCTCCTTCT
CCTTCAAACCTCCCAACCATCTAGTATTCGCCCATCAATCACACGCCTTT
TTTTCCGATCGTCTGCGAACCATAACCGCTTCCAACGCCGTCACCAACTC
CACCACCATGCTTCCCACGCGCGCCAGAGCTGCCTTTGCCCTATCTCCCG
CCACCTCGCTCCCCTTCTCGCGCCCGACCGTGCACGCCGCCACCCCATCC
TTTCCGCTATGGAAGCCGCCCGCCCCATGGCGCCCCTTCTCCAACCTCCG
TCCCTTCCCTCGCGCCCCTTCCCTCTCCACGCCGCCCAAAATGCAGCGCG
GCACGCCGCGCAATAACGGACCGCCCAACGCTAACGGACCGTCTGATTTC
GGCGAGCGCGAACTGTTTGCTTCTTCTCCCGAGCTGGAGCAGCTCGCTAT
CAAGTCTTCCGACGCCCCCATTCTCACCCGCATCGTGTCGTACAACGTGC
TTTCGTCCTCGTTGGCTGCCGACTCCCATTTTCCGGACTGCGAGCCTGCA
AACTTGAAGCCAGCCACGCGCCTCAAGCGCCTGCTCATCAAGTTGGAAGC
GCCTGTTGCCTCCAGGTCTATCATCTGCTTGCAAGAGGTTTCGCTGGCGT
GGAGTGGTCCATTGCACACCTTTTTCGCCAACCGCGGCTTCCATCTGCTC
CTGGCCTCGCATGGCTCCTACTTTAACGGCTACATGGGCGAGGGCCTGGC
CTTCCCGCTGGATCTCTACGAAGCGGTTGATCTGCACATCGAACGACTCA
CAGACTTTATTCGCTGGCCACAGGGTCCGAAACTGGTCGGCGTGCCGGGC
TTCTTCTCGGAAGTGCGCTCGCGACTCATCAGGGCGATGCAAGCGCTGGC
GGGCTTTCCAAAACCGTCGCGGTACGCGAAGCGAGAGCCGTGGACACACG
CAAGAGCGAGGCAAAACCGCTTCATCTTCGCTCGCTTGCGTTCGCGCACC
AACGGCGCAAAGATCTGCGTGGGCACGTATCACATGCCGTGCATTTTCTG
GTCGCCGCCCGTCATGATGATTCATTCTGCGCTGGTGGTTAGTCGCTTCC
AGAAATTGTGCGGCGAGGACTACGGTGTGTTGGCGGGCGACTTTAACATC
AAGCCCACTGACGAGTCGTATGCTATGATTCTGCGGGGGGCGGTTGATGA
GCAACATCGCGACTTTCCGCCTAATGCGCCGGATGGATCGGCTGCTTCGT
CGTGGTTTCCCAAGCTGTTGGCGCCGATGAAGAGTGCTTATCGGGAGGTT
CTTGGAGATGAACCGGATTTTACAAACTACGCAAAGGTTGAAAGTCAACC
TTTGTTTGTAGAAACGCTTGACTACCTGTTCTGCACATCGGATGTGGACG
TTGTGGACGTGATCCGATTGCCGAAGAGAGAGGGTGTACAGGGTCCGTAT
CCCGACGCGCTGGAACCGTCTGACCACGTGATGATTGGGGCGACGCTGAG
ACTACCGGCGGCGTCTCGCCAGACGCAGCGCAAGAAGGAGAGTGTCGGCG
CTGCGGCTGCTCAGGATGGATCTTGA

Coding sequence (CDS) from alignment at tig00000850_pilon:1077091..1078716+

>Ggra3683.t1 ID=Ggra3683.t1|Name=Ggra3683.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1626bp|location=Sequence derived from alignment at tig00000850_pilon:1077091..1078716+ (Gracilaria gracilis GNS1m male)
ATGAGCTACAATCTGTCCCCAACACGCCCCCGTCCTTATGCAACGCCCTC
AGACTCTCTTCCGTTGCCCGCCACCACCACCAACAAAAAGTCCTCCTTCT
CCTTCAAACCTCCCAACCATCTAGTATTCGCCCATCAATCACACGCCTTT
TTTTCCGATCGTCTGCGAACCATAACCGCTTCCAACGCCGTCACCAACTC
CACCACCATGCTTCCCACGCGCGCCAGAGCTGCCTTTGCCCTATCTCCCG
CCACCTCGCTCCCCTTCTCGCGCCCGACCGTGCACGCCGCCACCCCATCC
TTTCCGCTATGGAAGCCGCCCGCCCCATGGCGCCCCTTCTCCAACCTCCG
TCCCTTCCCTCGCGCCCCTTCCCTCTCCACGCCGCCCAAAATGCAGCGCG
GCACGCCGCGCAATAACGGACCGCCCAACGCTAACGGACCGTCTGATTTC
GGCGAGCGCGAACTGTTTGCTTCTTCTCCCGAGCTGGAGCAGCTCGCTAT
CAAGTCTTCCGACGCCCCCATTCTCACCCGCATCGTGTCGTACAACGTGC
TTTCGTCCTCGTTGGCTGCCGACTCCCATTTTCCGGACTGCGAGCCTGCA
AACTTGAAGCCAGCCACGCGCCTCAAGCGCCTGCTCATCAAGTTGGAAGC
GCCTGTTGCCTCCAGGTCTATCATCTGCTTGCAAGAGGTTTCGCTGGCGT
GGAGTGGTCCATTGCACACCTTTTTCGCCAACCGCGGCTTCCATCTGCTC
CTGGCCTCGCATGGCTCCTACTTTAACGGCTACATGGGCGAGGGCCTGGC
CTTCCCGCTGGATCTCTACGAAGCGGTTGATCTGCACATCGAACGACTCA
CAGACTTTATTCGCTGGCCACAGGGTCCGAAACTGGTCGGCGTGCCGGGC
TTCTTCTCGGAAGTGCGCTCGCGACTCATCAGGGCGATGCAAGCGCTGGC
GGGCTTTCCAAAACCGTCGCGGTACGCGAAGCGAGAGCCGTGGACACACG
CAAGAGCGAGGCAAAACCGCTTCATCTTCGCTCGCTTGCGTTCGCGCACC
AACGGCGCAAAGATCTGCGTGGGCACGTATCACATGCCGTGCATTTTCTG
GTCGCCGCCCGTCATGATGATTCATTCTGCGCTGGTGGTTAGTCGCTTCC
AGAAATTGTGCGGCGAGGACTACGGTGTGTTGGCGGGCGACTTTAACATC
AAGCCCACTGACGAGTCGTATGCTATGATTCTGCGGGGGGCGGTTGATGA
GCAACATCGCGACTTTCCGCCTAATGCGCCGGATGGATCGGCTGCTTCGT
CGTGGTTTCCCAAGCTGTTGGCGCCGATGAAGAGTGCTTATCGGGAGGTT
CTTGGAGATGAACCGGATTTTACAAACTACGCAAAGGTTGAAAGTCAACC
TTTGTTTGTAGAAACGCTTGACTACCTGTTCTGCACATCGGATGTGGACG
TTGTGGACGTGATCCGATTGCCGAAGAGAGAGGGTGTACAGGGTCCGTAT
CCCGACGCGCTGGAACCGTCTGACCACGTGATGATTGGGGCGACGCTGAG
ACTACCGGCGGCGTCTCGCCAGACGCAGCGCAAGAAGGAGAGTGTCGGCG
CTGCGGCTGCTCAGGATGGATCTTGA