Ggra3678.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3678.t1
Unique NameGgra3678.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length366
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1064379..1065476 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7260.FBpp0249543
Preferred namePEX3
PFAMsPeroxin-3
Max annot lvl33208|Metazoa
KEGG koko:K13336
KEGG TC3.A.20.1,9.A.17.1
KEGG Pathwayko04146,map04146
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005777,GO:0005778,GO:0005779,GO:0005783,GO:0005829,GO:0005886,GO:0005887,GO:0006082,GO:0006605,GO:0006612,GO:0006625,GO:0006629,GO:0006631,GO:0006633,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0008610,GO:0009058,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010556,GO:0012505,GO:0015031,GO:0015833,GO:0015919,GO:0016020,GO:0016021,GO:0016043,GO:0016053,GO:0016557,GO:0017038,GO:0019216,GO:0019222,GO:0019752,GO:0030497,GO:0031090,GO:0031224,GO:0031226,GO:0031231,GO:0031300,GO:0031301,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031903,GO:0031974,GO:0031981,GO:0032787,GO:0032991,GO:0032994,GO:0033036,GO:0033365,GO:0034248,GO:0034250,GO:0034613,GO:0042579,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043574,GO:0044085,GO:0044087,GO:0044091,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045046,GO:0045184,GO:0045834,GO:0046394,GO:0046889,GO:0046890,GO:0046907,GO:0046983,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072330,GO:0072594,GO:0072657,GO:0072662,GO:0072663,GO:0080090,GO:0090150,GO:0090153,GO:0090154,GO:0098588,GO:0098805,GO:1901576,GO:1905038,GO:2000303,GO:2000304
Evalue5.31e-09
EggNOG OGsKOG4444@1|root,KOG4444@2759|Eukaryota,39U4Y@33154|Opisthokonta,3B9S2@33208|Metazoa,3CVVE@33213|Bilateria,41WFM@6656|Arthropoda,3SKA5@50557|Insecta,44ZHY@7147|Diptera,45PZD@7214|Drosophilidae
DescriptionIt is involved in the biological process described with peroxisome organization
COG categoryMU
BRITEko00000,ko00001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3678Ggra3678Gracilaria gracilis GNS1m malegenetig00000850_pilon 1064379..1065476 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3678.t1.stop1Ggra3678.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 1064379..1064381 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3678.t1.CDS1Ggra3678.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1064379..1065476 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3678.t1.exon1Ggra3678.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 1064379..1065476 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3678.t1.start1Ggra3678.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 1065474..1065476 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3678.t1Ggra3678.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 1064379..1065476 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3678.t1 ID=Ggra3678.t1|Name=Ggra3678.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=366bp
MQSAPTAQFATLMRFVRRNSGRLTVLTLTAGGLVAAYTYFRRQMNTVNSS
IEAERAAGARSLRAVFLSNKNTIRTAYVALLPDMGAILAACENIECSAVL
GRLRERPGLQEKALLWEKLKIASLTHLVTAIYLVSAVYATVSLQINLLAR
YTAYYGDAPVQNLPNGDLQSSTSRNFLDLCRCVLNDVNIEEIAKQVERAV
LQTVKDVRLTAVYDVQRVECLLANCIIALRDGEEKNCLARLPERWFRAEI
DSDQQTDNNLRWLYEESLDLCECLDVSAVVENYCFDAVRYVSEKLSDEMS
PGSAKGLPFAHLLARFEKVTKALFAGEVESAMRSNESGVRFSACVFLSGE
KEIHRAASADTAEGS*
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spliced messenger RNA

>Ggra3678.t1 ID=Ggra3678.t1|Name=Ggra3678.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1098bp|location=Sequence derived from alignment at tig00000850_pilon:1064379..1065476- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTCCGCGCCGACAGCACAGTTTGCCACATTGATGCGGTTCGTGCG
ACGCAACTCTGGCCGCCTCACCGTCCTTACCCTTACCGCTGGTGGTTTGG
TGGCCGCTTATACATACTTCAGGAGGCAGATGAACACAGTGAATTCAAGT
ATTGAAGCCGAGCGAGCTGCCGGCGCTCGAAGTCTTCGAGCAGTGTTTCT
CTCCAACAAGAACACGATCCGAACAGCTTATGTGGCTTTACTACCAGATA
TGGGTGCTATTCTTGCCGCTTGTGAAAACATTGAATGTTCTGCCGTGTTA
GGAAGGCTCAGGGAGCGGCCCGGGTTGCAAGAGAAAGCGTTACTCTGGGA
AAAGCTCAAGATTGCGAGCCTAACTCATCTAGTAACTGCCATCTATCTAG
TTTCTGCTGTATACGCCACTGTCTCGCTGCAAATTAATCTTCTTGCTCGA
TATACCGCCTACTACGGTGACGCTCCAGTACAAAACTTACCAAATGGAGA
TTTGCAATCGAGTACGTCCAGAAACTTTCTTGATTTGTGTCGCTGCGTGC
TAAATGATGTGAACATTGAAGAAATAGCCAAACAAGTGGAGAGAGCAGTG
CTGCAAACTGTCAAGGACGTGAGGCTCACGGCTGTTTATGATGTACAGCG
AGTAGAATGCTTGCTTGCCAACTGCATCATTGCATTGCGTGACGGCGAGG
AAAAGAATTGCTTGGCGCGCTTACCTGAACGCTGGTTTCGCGCAGAGATC
GATTCAGACCAACAAACCGATAATAATCTGCGCTGGCTCTATGAAGAATC
TCTGGACCTGTGTGAATGCTTGGATGTTTCTGCGGTCGTGGAAAACTATT
GCTTTGACGCTGTTCGATACGTGAGTGAAAAACTTTCGGACGAAATGTCG
CCGGGAAGTGCGAAAGGGTTGCCGTTCGCACACTTGCTTGCAAGGTTTGA
AAAAGTCACCAAGGCTTTGTTCGCTGGCGAGGTGGAATCTGCTATGAGGA
GCAATGAATCTGGAGTTCGCTTCTCTGCATGTGTCTTTTTGTCGGGCGAA
AAGGAAATACATAGAGCAGCAAGTGCAGACACAGCTGAAGGGTCATAG
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protein sequence of Ggra3678.t1

>Ggra3678.t1 ID=Ggra3678.t1|Name=Ggra3678.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=366bp
MQSAPTAQFATLMRFVRRNSGRLTVLTLTAGGLVAAYTYFRRQMNTVNSS
IEAERAAGARSLRAVFLSNKNTIRTAYVALLPDMGAILAACENIECSAVL
GRLRERPGLQEKALLWEKLKIASLTHLVTAIYLVSAVYATVSLQINLLAR
YTAYYGDAPVQNLPNGDLQSSTSRNFLDLCRCVLNDVNIEEIAKQVERAV
LQTVKDVRLTAVYDVQRVECLLANCIIALRDGEEKNCLARLPERWFRAEI
DSDQQTDNNLRWLYEESLDLCECLDVSAVVENYCFDAVRYVSEKLSDEMS
PGSAKGLPFAHLLARFEKVTKALFAGEVESAMRSNESGVRFSACVFLSGE
KEIHRAASADTAEGS*
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mRNA from alignment at tig00000850_pilon:1064379..1065476-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3678.t1 ID=Ggra3678.t1|Name=Ggra3678.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1098bp|location=Sequence derived from alignment at tig00000850_pilon:1064379..1065476- (Gracilaria gracilis GNS1m male)
ATGCAGTCCGCGCCGACAGCACAGTTTGCCACATTGATGCGGTTCGTGCG
ACGCAACTCTGGCCGCCTCACCGTCCTTACCCTTACCGCTGGTGGTTTGG
TGGCCGCTTATACATACTTCAGGAGGCAGATGAACACAGTGAATTCAAGT
ATTGAAGCCGAGCGAGCTGCCGGCGCTCGAAGTCTTCGAGCAGTGTTTCT
CTCCAACAAGAACACGATCCGAACAGCTTATGTGGCTTTACTACCAGATA
TGGGTGCTATTCTTGCCGCTTGTGAAAACATTGAATGTTCTGCCGTGTTA
GGAAGGCTCAGGGAGCGGCCCGGGTTGCAAGAGAAAGCGTTACTCTGGGA
AAAGCTCAAGATTGCGAGCCTAACTCATCTAGTAACTGCCATCTATCTAG
TTTCTGCTGTATACGCCACTGTCTCGCTGCAAATTAATCTTCTTGCTCGA
TATACCGCCTACTACGGTGACGCTCCAGTACAAAACTTACCAAATGGAGA
TTTGCAATCGAGTACGTCCAGAAACTTTCTTGATTTGTGTCGCTGCGTGC
TAAATGATGTGAACATTGAAGAAATAGCCAAACAAGTGGAGAGAGCAGTG
CTGCAAACTGTCAAGGACGTGAGGCTCACGGCTGTTTATGATGTACAGCG
AGTAGAATGCTTGCTTGCCAACTGCATCATTGCATTGCGTGACGGCGAGG
AAAAGAATTGCTTGGCGCGCTTACCTGAACGCTGGTTTCGCGCAGAGATC
GATTCAGACCAACAAACCGATAATAATCTGCGCTGGCTCTATGAAGAATC
TCTGGACCTGTGTGAATGCTTGGATGTTTCTGCGGTCGTGGAAAACTATT
GCTTTGACGCTGTTCGATACGTGAGTGAAAAACTTTCGGACGAAATGTCG
CCGGGAAGTGCGAAAGGGTTGCCGTTCGCACACTTGCTTGCAAGGTTTGA
AAAAGTCACCAAGGCTTTGTTCGCTGGCGAGGTGGAATCTGCTATGAGGA
GCAATGAATCTGGAGTTCGCTTCTCTGCATGTGTCTTTTTGTCGGGCGAA
AAGGAAATACATAGAGCAGCAAGTGCAGACACAGCTGAAGGGTCATAG
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Coding sequence (CDS) from alignment at tig00000850_pilon:1064379..1065476-

>Ggra3678.t1 ID=Ggra3678.t1|Name=Ggra3678.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1098bp|location=Sequence derived from alignment at tig00000850_pilon:1064379..1065476- (Gracilaria gracilis GNS1m male)
ATGCAGTCCGCGCCGACAGCACAGTTTGCCACATTGATGCGGTTCGTGCG
ACGCAACTCTGGCCGCCTCACCGTCCTTACCCTTACCGCTGGTGGTTTGG
TGGCCGCTTATACATACTTCAGGAGGCAGATGAACACAGTGAATTCAAGT
ATTGAAGCCGAGCGAGCTGCCGGCGCTCGAAGTCTTCGAGCAGTGTTTCT
CTCCAACAAGAACACGATCCGAACAGCTTATGTGGCTTTACTACCAGATA
TGGGTGCTATTCTTGCCGCTTGTGAAAACATTGAATGTTCTGCCGTGTTA
GGAAGGCTCAGGGAGCGGCCCGGGTTGCAAGAGAAAGCGTTACTCTGGGA
AAAGCTCAAGATTGCGAGCCTAACTCATCTAGTAACTGCCATCTATCTAG
TTTCTGCTGTATACGCCACTGTCTCGCTGCAAATTAATCTTCTTGCTCGA
TATACCGCCTACTACGGTGACGCTCCAGTACAAAACTTACCAAATGGAGA
TTTGCAATCGAGTACGTCCAGAAACTTTCTTGATTTGTGTCGCTGCGTGC
TAAATGATGTGAACATTGAAGAAATAGCCAAACAAGTGGAGAGAGCAGTG
CTGCAAACTGTCAAGGACGTGAGGCTCACGGCTGTTTATGATGTACAGCG
AGTAGAATGCTTGCTTGCCAACTGCATCATTGCATTGCGTGACGGCGAGG
AAAAGAATTGCTTGGCGCGCTTACCTGAACGCTGGTTTCGCGCAGAGATC
GATTCAGACCAACAAACCGATAATAATCTGCGCTGGCTCTATGAAGAATC
TCTGGACCTGTGTGAATGCTTGGATGTTTCTGCGGTCGTGGAAAACTATT
GCTTTGACGCTGTTCGATACGTGAGTGAAAAACTTTCGGACGAAATGTCG
CCGGGAAGTGCGAAAGGGTTGCCGTTCGCACACTTGCTTGCAAGGTTTGA
AAAAGTCACCAAGGCTTTGTTCGCTGGCGAGGTGGAATCTGCTATGAGGA
GCAATGAATCTGGAGTTCGCTTCTCTGCATGTGTCTTTTTGTCGGGCGAA
AAGGAAATACATAGAGCAGCAAGTGCAGACACAGCTGAAGGGTCATAG
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