Ggra3676.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3676.t1
Unique NameGgra3676.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length291
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1059131..1060003 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3659.XP_004159455.1
Preferred nameNOL
PFAMsMyb_DNA-binding,adh_short
Max annot lvl35493|Streptophyta
KEGG rclassRC00116
KEGG koko:K13606
KEGG ReactionR08914,R08915,R09069,R09070
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006787,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009507,GO:0009536,GO:0009987,GO:0010304,GO:0015994,GO:0015996,GO:0016491,GO:0016614,GO:0016616,GO:0019439,GO:0019538,GO:0030163,GO:0033013,GO:0033015,GO:0034256,GO:0034641,GO:0042440,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046149,GO:0046483,GO:0046700,GO:0051186,GO:0051187,GO:0055114,GO:0071704,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575
Evalue8.54e-59
EggNOG OGsCOG1028@1|root,KOG0725@2759|Eukaryota,37NI4@33090|Viridiplantae,3GAVI@35493|Streptophyta,4JFRN@91835|fabids
EC1.1.1.294
DescriptionChlorophyll(Ide) b reductase NOL
COG categoryQ
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3676Ggra3676Gracilaria gracilis GNS1m malegenetig00000850_pilon 1059131..1060003 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3676.t1.stop1Ggra3676.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 1059131..1059133 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3676.t1.CDS1Ggra3676.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1059131..1060003 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3676.t1.exon1Ggra3676.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 1059131..1060003 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3676.t1.start1Ggra3676.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 1060001..1060003 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3676.t1Ggra3676.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 1059131..1060003 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3676.t1 ID=Ggra3676.t1|Name=Ggra3676.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=291bp
MTRNFGIVITGSTKGVGRALARQFVGENDAVVVSSRTADAVRNTVEWLQA
DHPGAKVFGCVADVSDEQQVAKLAEFATRNLPSVDAFICNAGTVGKRAAL
RDAQPDDLRNVVATNLLGSLFCAREAVRIADAQQRRVHVFVMDGSGTIGN
ATATYAAYGATKRSVPQLVKTLNKECAAAFCRFHCLSPGMVLTDLLLGEN
VERSSRRIFNLLAEEPHTVAEYLVPRMRSVLTYDRQNTYIKFLTVPKAAY
QLLTGFALGMRKNKFFDETTGERVDQSSGRYSASGVRQRE*
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spliced messenger RNA

>Ggra3676.t1 ID=Ggra3676.t1|Name=Ggra3676.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=873bp|location=Sequence derived from alignment at tig00000850_pilon:1059131..1060003- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCGCAACTTCGGCATAGTGATCACTGGTTCTACCAAGGGTGTCGG
GCGTGCGCTGGCTCGACAATTTGTTGGCGAGAACGACGCCGTGGTGGTGT
CGTCGCGTACAGCCGACGCCGTGCGCAACACAGTGGAGTGGTTGCAGGCC
GACCACCCGGGCGCCAAAGTGTTTGGCTGCGTGGCAGATGTGAGCGATGA
GCAACAGGTGGCCAAACTGGCCGAGTTTGCTACGCGCAACCTGCCGTCAG
TGGACGCCTTCATCTGCAATGCCGGCACGGTGGGCAAGCGCGCAGCGCTG
CGGGACGCGCAGCCAGACGATTTGCGGAACGTCGTGGCCACCAACTTGTT
AGGGTCACTGTTCTGTGCGAGGGAGGCAGTGCGCATTGCTGACGCGCAGC
AACGGCGCGTTCATGTGTTTGTCATGGATGGAAGTGGGACGATTGGTAAT
GCTACCGCGACGTACGCAGCGTACGGCGCGACGAAACGTAGCGTGCCGCA
GCTGGTCAAGACGCTCAACAAGGAATGTGCGGCGGCGTTTTGTCGCTTCC
ATTGCCTGTCGCCGGGCATGGTGCTCACCGACCTGCTGCTGGGCGAGAAC
GTTGAGCGCTCGTCGAGACGCATCTTCAACTTGCTAGCAGAGGAGCCGCA
CACGGTTGCAGAGTATCTGGTGCCACGCATGCGATCGGTGTTGACGTACG
ATCGGCAGAATACGTACATCAAGTTTCTGACGGTGCCCAAGGCGGCGTAC
CAGCTACTGACGGGCTTTGCGCTGGGCATGCGGAAGAACAAGTTCTTCGA
CGAGACGACGGGCGAGCGCGTGGACCAGAGCAGCGGGCGCTACAGCGCGT
CGGGGGTACGACAGCGCGAATAA
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protein sequence of Ggra3676.t1

>Ggra3676.t1 ID=Ggra3676.t1|Name=Ggra3676.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=291bp
MTRNFGIVITGSTKGVGRALARQFVGENDAVVVSSRTADAVRNTVEWLQA
DHPGAKVFGCVADVSDEQQVAKLAEFATRNLPSVDAFICNAGTVGKRAAL
RDAQPDDLRNVVATNLLGSLFCAREAVRIADAQQRRVHVFVMDGSGTIGN
ATATYAAYGATKRSVPQLVKTLNKECAAAFCRFHCLSPGMVLTDLLLGEN
VERSSRRIFNLLAEEPHTVAEYLVPRMRSVLTYDRQNTYIKFLTVPKAAY
QLLTGFALGMRKNKFFDETTGERVDQSSGRYSASGVRQRE*
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mRNA from alignment at tig00000850_pilon:1059131..1060003-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3676.t1 ID=Ggra3676.t1|Name=Ggra3676.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=873bp|location=Sequence derived from alignment at tig00000850_pilon:1059131..1060003- (Gracilaria gracilis GNS1m male)
ATGACGCGCAACTTCGGCATAGTGATCACTGGTTCTACCAAGGGTGTCGG
GCGTGCGCTGGCTCGACAATTTGTTGGCGAGAACGACGCCGTGGTGGTGT
CGTCGCGTACAGCCGACGCCGTGCGCAACACAGTGGAGTGGTTGCAGGCC
GACCACCCGGGCGCCAAAGTGTTTGGCTGCGTGGCAGATGTGAGCGATGA
GCAACAGGTGGCCAAACTGGCCGAGTTTGCTACGCGCAACCTGCCGTCAG
TGGACGCCTTCATCTGCAATGCCGGCACGGTGGGCAAGCGCGCAGCGCTG
CGGGACGCGCAGCCAGACGATTTGCGGAACGTCGTGGCCACCAACTTGTT
AGGGTCACTGTTCTGTGCGAGGGAGGCAGTGCGCATTGCTGACGCGCAGC
AACGGCGCGTTCATGTGTTTGTCATGGATGGAAGTGGGACGATTGGTAAT
GCTACCGCGACGTACGCAGCGTACGGCGCGACGAAACGTAGCGTGCCGCA
GCTGGTCAAGACGCTCAACAAGGAATGTGCGGCGGCGTTTTGTCGCTTCC
ATTGCCTGTCGCCGGGCATGGTGCTCACCGACCTGCTGCTGGGCGAGAAC
GTTGAGCGCTCGTCGAGACGCATCTTCAACTTGCTAGCAGAGGAGCCGCA
CACGGTTGCAGAGTATCTGGTGCCACGCATGCGATCGGTGTTGACGTACG
ATCGGCAGAATACGTACATCAAGTTTCTGACGGTGCCCAAGGCGGCGTAC
CAGCTACTGACGGGCTTTGCGCTGGGCATGCGGAAGAACAAGTTCTTCGA
CGAGACGACGGGCGAGCGCGTGGACCAGAGCAGCGGGCGCTACAGCGCGT
CGGGGGTACGACAGCGCGAATAA
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Coding sequence (CDS) from alignment at tig00000850_pilon:1059131..1060003-

>Ggra3676.t1 ID=Ggra3676.t1|Name=Ggra3676.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=873bp|location=Sequence derived from alignment at tig00000850_pilon:1059131..1060003- (Gracilaria gracilis GNS1m male)
ATGACGCGCAACTTCGGCATAGTGATCACTGGTTCTACCAAGGGTGTCGG
GCGTGCGCTGGCTCGACAATTTGTTGGCGAGAACGACGCCGTGGTGGTGT
CGTCGCGTACAGCCGACGCCGTGCGCAACACAGTGGAGTGGTTGCAGGCC
GACCACCCGGGCGCCAAAGTGTTTGGCTGCGTGGCAGATGTGAGCGATGA
GCAACAGGTGGCCAAACTGGCCGAGTTTGCTACGCGCAACCTGCCGTCAG
TGGACGCCTTCATCTGCAATGCCGGCACGGTGGGCAAGCGCGCAGCGCTG
CGGGACGCGCAGCCAGACGATTTGCGGAACGTCGTGGCCACCAACTTGTT
AGGGTCACTGTTCTGTGCGAGGGAGGCAGTGCGCATTGCTGACGCGCAGC
AACGGCGCGTTCATGTGTTTGTCATGGATGGAAGTGGGACGATTGGTAAT
GCTACCGCGACGTACGCAGCGTACGGCGCGACGAAACGTAGCGTGCCGCA
GCTGGTCAAGACGCTCAACAAGGAATGTGCGGCGGCGTTTTGTCGCTTCC
ATTGCCTGTCGCCGGGCATGGTGCTCACCGACCTGCTGCTGGGCGAGAAC
GTTGAGCGCTCGTCGAGACGCATCTTCAACTTGCTAGCAGAGGAGCCGCA
CACGGTTGCAGAGTATCTGGTGCCACGCATGCGATCGGTGTTGACGTACG
ATCGGCAGAATACGTACATCAAGTTTCTGACGGTGCCCAAGGCGGCGTAC
CAGCTACTGACGGGCTTTGCGCTGGGCATGCGGAAGAACAAGTTCTTCGA
CGAGACGACGGGCGAGCGCGTGGACCAGAGCAGCGGGCGCTACAGCGCGT
CGGGGGTACGACAGCGCGAATAA
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