Ggra3675.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3675.t1
Unique Name	Ggra3675.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	567

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000850_pilon	contig	tig00000850_pilon:1056653..1058353 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	27923.ML342222a-PA
Preferred name	DTWD2
PFAMs	DTW
Max annot lvl	33208\|Metazoa
Evalue	4.46e-06
EggNOG OGs	COG3148@1\|root,KOG4382@2759\|Eukaryota,38G88@33154\|Opisthokonta,3BENS@33208\|Metazoa
Description	DTW
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3675	Ggra3675	Gracilaria gracilis GNS1m male	gene	tig00000850_pilon 1056653..1058353 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3675.t1.start1	Ggra3675.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000850_pilon 1056653..1056655 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3675.t1.CDS1	Ggra3675.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000850_pilon 1056653..1058353 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3675.t1.exon1	Ggra3675.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000850_pilon 1056653..1058353 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3675.t1.stop1	Ggra3675.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000850_pilon 1058351..1058353 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3675.t1	Ggra3675.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000850_pilon 1056653..1058353 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000850_pilon:1056653..1058353+
coding sequence from alignment at tig00000850_pilon:1056653..1058353+

mRNA sequence

>Ggra3675.t1 ID=Ggra3675.t1|Name=Ggra3675.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=567bp
MIAHYLKVPGVRDWLFNRNPTPSANALPLATAFSYACMYYSAATAPRTPP
PYALPEPYLDFGDVLLWQHVYDGIAVGNLYNKKERHALAHVRDSVLHSTR
LSSRPRKRNFAADLRVDHLELVEFAWMSDDSLIIACRRLHKPSAAHHNRL
VLSCDIICYDVLPPHQPLTSPLLTMVLRERPTVCHFCGVRGIRQCACPPS
FKSRAPAHAEQTFSYPSPNMSLHHPPNSERLIEAWLAFCKRLFSFAQSGS
FFVEMYRHLPQARTKLFYSPPNPIPYQFVCGDRSETLQLLSLYVRRVRLC
QRLLMAESRLQSAQQQFVQYTVKPSQNKLLEKDHKVPANNAPNAPYSQSD
THGVVPSLAGHQLEQQFLMQLDADALLGRLSDDGSSPSPSTTVTGNSPTS
SVHDAGVRVNNVETDVSDALLAALAPTISASDIVASTPNGGMQISQWNGG
TTALGATSAVGTDVVTTGVASEEGGANASRRMTTDKEVRRYITCDAQNVP
ACRKCGHRFQKRGNLIRHIQAVHLKLKPFICTFCSARFGYKTHLKRHQQK
HTRTAHEDVTLFQVHA*

spliced messenger RNA

>Ggra3675.t1 ID=Ggra3675.t1|Name=Ggra3675.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1701bp|location=Sequence derived from alignment at tig00000850_pilon:1056653..1058353+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGCCCACTACCTCAAGGTGCCCGGCGTGAGAGACTGGCTCTTCAA
CCGCAACCCCACCCCCTCCGCGAACGCCCTCCCGCTCGCCACCGCCTTCA
GTTATGCATGCATGTACTACTCGGCCGCTACTGCCCCGCGTACTCCCCCG
CCCTATGCTCTGCCCGAGCCGTACCTCGACTTTGGCGACGTGCTGCTCTG
GCAACACGTCTACGATGGCATCGCCGTGGGCAATCTGTACAACAAGAAGG
AGCGTCACGCCCTGGCCCACGTGCGCGACTCCGTTTTGCACTCCACCCGC
CTCTCCAGCCGCCCTCGCAAGCGAAACTTCGCCGCCGACCTGCGTGTTGA
CCATCTGGAGCTCGTAGAGTTTGCCTGGATGAGCGACGACAGTCTTATCA
TCGCGTGCAGGCGACTGCATAAGCCGTCCGCCGCACATCACAATCGACTC
GTACTTTCTTGCGACATCATCTGCTACGATGTGCTGCCGCCACATCAGCC
GCTCACGTCGCCGCTGCTCACCATGGTGCTCCGCGAGCGCCCTACGGTGT
GTCACTTTTGTGGAGTACGCGGTATTCGCCAGTGCGCCTGTCCGCCGTCG
TTCAAGAGCAGGGCGCCGGCCCACGCCGAACAAACCTTCTCCTACCCGTC
ACCCAACATGTCTTTGCACCACCCGCCAAACTCAGAACGTCTTATTGAAG
CATGGCTGGCGTTTTGTAAGCGACTGTTCTCGTTCGCTCAAAGCGGTTCG
TTCTTCGTTGAGATGTATCGTCATCTGCCTCAAGCACGGACAAAGCTTTT
CTACAGCCCGCCTAACCCTATCCCGTATCAGTTTGTGTGCGGTGACCGCT
CAGAGACGCTGCAGCTACTCAGTCTGTACGTACGGCGCGTACGGCTTTGT
CAGAGACTGTTGATGGCCGAATCGCGACTACAAAGCGCTCAGCAACAGTT
TGTACAGTACACAGTCAAGCCATCACAGAACAAGCTGCTTGAAAAAGATC
ATAAGGTACCGGCAAACAACGCGCCAAACGCACCGTATAGCCAAAGCGAC
ACACACGGTGTGGTTCCTTCGCTGGCGGGGCATCAGCTAGAACAACAGTT
TCTGATGCAACTCGATGCAGACGCGCTACTAGGAAGACTGTCGGATGACG
GAAGTAGTCCGAGCCCAAGCACGACCGTGACGGGGAATTCACCCACGTCA
TCGGTTCATGATGCGGGCGTGCGCGTTAACAACGTTGAAACAGACGTCAG
CGACGCCTTGCTGGCAGCGTTGGCGCCGACGATAAGTGCCAGCGATATTG
TGGCATCGACGCCAAACGGTGGCATGCAGATATCGCAGTGGAATGGAGGC
ACGACGGCGCTGGGGGCGACGAGTGCTGTGGGCACGGACGTGGTGACAAC
AGGGGTTGCGAGTGAGGAGGGCGGCGCGAACGCGTCGCGTCGAATGACAA
CGGACAAGGAGGTGAGACGGTACATCACGTGCGACGCGCAGAATGTACCG
GCGTGTCGAAAGTGTGGACATCGCTTTCAGAAGCGAGGCAATCTGATCCG
CCATATTCAGGCGGTACATCTCAAGTTGAAGCCGTTCATTTGTACGTTTT
GCTCCGCGAGATTCGGATACAAGACGCATCTTAAGAGACATCAACAAAAG
CACACCCGAACGGCGCACGAGGACGTGACGTTGTTTCAGGTGCACGCGTG
A

protein sequence of Ggra3675.t1

>Ggra3675.t1 ID=Ggra3675.t1|Name=Ggra3675.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=567bp
MIAHYLKVPGVRDWLFNRNPTPSANALPLATAFSYACMYYSAATAPRTPP
PYALPEPYLDFGDVLLWQHVYDGIAVGNLYNKKERHALAHVRDSVLHSTR
LSSRPRKRNFAADLRVDHLELVEFAWMSDDSLIIACRRLHKPSAAHHNRL
VLSCDIICYDVLPPHQPLTSPLLTMVLRERPTVCHFCGVRGIRQCACPPS
FKSRAPAHAEQTFSYPSPNMSLHHPPNSERLIEAWLAFCKRLFSFAQSGS
FFVEMYRHLPQARTKLFYSPPNPIPYQFVCGDRSETLQLLSLYVRRVRLC
QRLLMAESRLQSAQQQFVQYTVKPSQNKLLEKDHKVPANNAPNAPYSQSD
THGVVPSLAGHQLEQQFLMQLDADALLGRLSDDGSSPSPSTTVTGNSPTS
SVHDAGVRVNNVETDVSDALLAALAPTISASDIVASTPNGGMQISQWNGG
TTALGATSAVGTDVVTTGVASEEGGANASRRMTTDKEVRRYITCDAQNVP
ACRKCGHRFQKRGNLIRHIQAVHLKLKPFICTFCSARFGYKTHLKRHQQK
HTRTAHEDVTLFQVHA*

mRNA from alignment at tig00000850_pilon:1056653..1058353+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3675.t1 ID=Ggra3675.t1|Name=Ggra3675.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1701bp|location=Sequence derived from alignment at tig00000850_pilon:1056653..1058353+ (Gracilaria gracilis GNS1m male)
ATGATCGCCCACTACCTCAAGGTGCCCGGCGTGAGAGACTGGCTCTTCAA
CCGCAACCCCACCCCCTCCGCGAACGCCCTCCCGCTCGCCACCGCCTTCA
GTTATGCATGCATGTACTACTCGGCCGCTACTGCCCCGCGTACTCCCCCG
CCCTATGCTCTGCCCGAGCCGTACCTCGACTTTGGCGACGTGCTGCTCTG
GCAACACGTCTACGATGGCATCGCCGTGGGCAATCTGTACAACAAGAAGG
AGCGTCACGCCCTGGCCCACGTGCGCGACTCCGTTTTGCACTCCACCCGC
CTCTCCAGCCGCCCTCGCAAGCGAAACTTCGCCGCCGACCTGCGTGTTGA
CCATCTGGAGCTCGTAGAGTTTGCCTGGATGAGCGACGACAGTCTTATCA
TCGCGTGCAGGCGACTGCATAAGCCGTCCGCCGCACATCACAATCGACTC
GTACTTTCTTGCGACATCATCTGCTACGATGTGCTGCCGCCACATCAGCC
GCTCACGTCGCCGCTGCTCACCATGGTGCTCCGCGAGCGCCCTACGGTGT
GTCACTTTTGTGGAGTACGCGGTATTCGCCAGTGCGCCTGTCCGCCGTCG
TTCAAGAGCAGGGCGCCGGCCCACGCCGAACAAACCTTCTCCTACCCGTC
ACCCAACATGTCTTTGCACCACCCGCCAAACTCAGAACGTCTTATTGAAG
CATGGCTGGCGTTTTGTAAGCGACTGTTCTCGTTCGCTCAAAGCGGTTCG
TTCTTCGTTGAGATGTATCGTCATCTGCCTCAAGCACGGACAAAGCTTTT
CTACAGCCCGCCTAACCCTATCCCGTATCAGTTTGTGTGCGGTGACCGCT
CAGAGACGCTGCAGCTACTCAGTCTGTACGTACGGCGCGTACGGCTTTGT
CAGAGACTGTTGATGGCCGAATCGCGACTACAAAGCGCTCAGCAACAGTT
TGTACAGTACACAGTCAAGCCATCACAGAACAAGCTGCTTGAAAAAGATC
ATAAGGTACCGGCAAACAACGCGCCAAACGCACCGTATAGCCAAAGCGAC
ACACACGGTGTGGTTCCTTCGCTGGCGGGGCATCAGCTAGAACAACAGTT
TCTGATGCAACTCGATGCAGACGCGCTACTAGGAAGACTGTCGGATGACG
GAAGTAGTCCGAGCCCAAGCACGACCGTGACGGGGAATTCACCCACGTCA
TCGGTTCATGATGCGGGCGTGCGCGTTAACAACGTTGAAACAGACGTCAG
CGACGCCTTGCTGGCAGCGTTGGCGCCGACGATAAGTGCCAGCGATATTG
TGGCATCGACGCCAAACGGTGGCATGCAGATATCGCAGTGGAATGGAGGC
ACGACGGCGCTGGGGGCGACGAGTGCTGTGGGCACGGACGTGGTGACAAC
AGGGGTTGCGAGTGAGGAGGGCGGCGCGAACGCGTCGCGTCGAATGACAA
CGGACAAGGAGGTGAGACGGTACATCACGTGCGACGCGCAGAATGTACCG
GCGTGTCGAAAGTGTGGACATCGCTTTCAGAAGCGAGGCAATCTGATCCG
CCATATTCAGGCGGTACATCTCAAGTTGAAGCCGTTCATTTGTACGTTTT
GCTCCGCGAGATTCGGATACAAGACGCATCTTAAGAGACATCAACAAAAG
CACACCCGAACGGCGCACGAGGACGTGACGTTGTTTCAGGTGCACGCGTG
A

Coding sequence (CDS) from alignment at tig00000850_pilon:1056653..1058353+

>Ggra3675.t1 ID=Ggra3675.t1|Name=Ggra3675.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1701bp|location=Sequence derived from alignment at tig00000850_pilon:1056653..1058353+ (Gracilaria gracilis GNS1m male)
ATGATCGCCCACTACCTCAAGGTGCCCGGCGTGAGAGACTGGCTCTTCAA
CCGCAACCCCACCCCCTCCGCGAACGCCCTCCCGCTCGCCACCGCCTTCA
GTTATGCATGCATGTACTACTCGGCCGCTACTGCCCCGCGTACTCCCCCG
CCCTATGCTCTGCCCGAGCCGTACCTCGACTTTGGCGACGTGCTGCTCTG
GCAACACGTCTACGATGGCATCGCCGTGGGCAATCTGTACAACAAGAAGG
AGCGTCACGCCCTGGCCCACGTGCGCGACTCCGTTTTGCACTCCACCCGC
CTCTCCAGCCGCCCTCGCAAGCGAAACTTCGCCGCCGACCTGCGTGTTGA
CCATCTGGAGCTCGTAGAGTTTGCCTGGATGAGCGACGACAGTCTTATCA
TCGCGTGCAGGCGACTGCATAAGCCGTCCGCCGCACATCACAATCGACTC
GTACTTTCTTGCGACATCATCTGCTACGATGTGCTGCCGCCACATCAGCC
GCTCACGTCGCCGCTGCTCACCATGGTGCTCCGCGAGCGCCCTACGGTGT
GTCACTTTTGTGGAGTACGCGGTATTCGCCAGTGCGCCTGTCCGCCGTCG
TTCAAGAGCAGGGCGCCGGCCCACGCCGAACAAACCTTCTCCTACCCGTC
ACCCAACATGTCTTTGCACCACCCGCCAAACTCAGAACGTCTTATTGAAG
CATGGCTGGCGTTTTGTAAGCGACTGTTCTCGTTCGCTCAAAGCGGTTCG
TTCTTCGTTGAGATGTATCGTCATCTGCCTCAAGCACGGACAAAGCTTTT
CTACAGCCCGCCTAACCCTATCCCGTATCAGTTTGTGTGCGGTGACCGCT
CAGAGACGCTGCAGCTACTCAGTCTGTACGTACGGCGCGTACGGCTTTGT
CAGAGACTGTTGATGGCCGAATCGCGACTACAAAGCGCTCAGCAACAGTT
TGTACAGTACACAGTCAAGCCATCACAGAACAAGCTGCTTGAAAAAGATC
ATAAGGTACCGGCAAACAACGCGCCAAACGCACCGTATAGCCAAAGCGAC
ACACACGGTGTGGTTCCTTCGCTGGCGGGGCATCAGCTAGAACAACAGTT
TCTGATGCAACTCGATGCAGACGCGCTACTAGGAAGACTGTCGGATGACG
GAAGTAGTCCGAGCCCAAGCACGACCGTGACGGGGAATTCACCCACGTCA
TCGGTTCATGATGCGGGCGTGCGCGTTAACAACGTTGAAACAGACGTCAG
CGACGCCTTGCTGGCAGCGTTGGCGCCGACGATAAGTGCCAGCGATATTG
TGGCATCGACGCCAAACGGTGGCATGCAGATATCGCAGTGGAATGGAGGC
ACGACGGCGCTGGGGGCGACGAGTGCTGTGGGCACGGACGTGGTGACAAC
AGGGGTTGCGAGTGAGGAGGGCGGCGCGAACGCGTCGCGTCGAATGACAA
CGGACAAGGAGGTGAGACGGTACATCACGTGCGACGCGCAGAATGTACCG
GCGTGTCGAAAGTGTGGACATCGCTTTCAGAAGCGAGGCAATCTGATCCG
CCATATTCAGGCGGTACATCTCAAGTTGAAGCCGTTCATTTGTACGTTTT
GCTCCGCGAGATTCGGATACAAGACGCATCTTAAGAGACATCAACAAAAG
CACACCCGAACGGCGCACGAGGACGTGACGTTGTTTCAGGTGCACGCGTG
A