Ggra3669.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3669.t1
Unique NameGgra3669.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length214
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1043177..1043818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703636.1
Preferred nameCLPP4
PFAMsCLP_protease
Max annot lvl2759|Eukaryota
KEGG koko:K01358
KEGG Pathwayko04112,ko04212,map04112,map04212
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006996,GO:0008150,GO:0009368,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009657,GO:0009658,GO:0009840,GO:0009941,GO:0009987,GO:0016020,GO:0016043,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0034357,GO:0040034,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048506,GO:0048509,GO:0048510,GO:0050789,GO:0050793,GO:0055035,GO:0065007,GO:0071840
Evalue6.85e-112
EggNOG OGsCOG0740@1|root,KOG0840@2759|Eukaryota
EC3.4.21.92
Descriptionserine-type endopeptidase activity
COG categoryOU
BRITEko00000,ko00001,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3669Ggra3669Gracilaria gracilis GNS1m malegenetig00000850_pilon 1043177..1043818 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3669.t1.start1Ggra3669.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 1043177..1043179 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3669.t1.CDS1Ggra3669.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1043177..1043818 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3669.t1.exon1Ggra3669.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 1043177..1043818 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3669.t1.stop1Ggra3669.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 1043816..1043818 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3669.t1Ggra3669.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 1043177..1043818 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3669.t1 ID=Ggra3669.t1|Name=Ggra3669.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=214bp
MDLRGPRPQKKPPAPVPMVTFGENQMDVYSRLAKDRILLLGRQVDDEVAN
ALVAQMLFLSADDPTKDITLYINSPGGSVNAGLAIFDAMQYIPCDVATIC
FGTAASMGAFLLSAGAKGKRKSLPNSRIMIHQPLGGAQGQAADIEIQAKE
ILFIRSLLNGYLSGATGQDLSTIERDTDRDFFMTPEEALEYGIIDEVIQT
KRSLPKPPKPVLQ*
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spliced messenger RNA

>Ggra3669.t1 ID=Ggra3669.t1|Name=Ggra3669.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00000850_pilon:1043177..1043818+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCTTCGCGGACCGCGTCCTCAAAAGAAGCCCCCAGCGCCGGTGCC
CATGGTCACATTCGGCGAGAATCAAATGGACGTATATTCACGTCTCGCGA
AAGACCGCATTCTACTTCTTGGTCGTCAAGTCGATGATGAGGTGGCAAAC
GCGCTCGTTGCACAGATGCTGTTTCTTTCGGCAGATGATCCTACGAAAGA
CATTACGCTGTACATAAATTCCCCTGGAGGCTCAGTGAATGCCGGGCTTG
CTATTTTTGATGCTATGCAATACATACCTTGTGATGTTGCCACAATATGC
TTTGGAACTGCGGCTTCCATGGGAGCATTCTTGCTCTCGGCTGGTGCCAA
GGGAAAGAGAAAGAGTTTACCAAACTCTCGAATTATGATCCATCAACCTT
TGGGAGGTGCTCAAGGCCAAGCAGCTGATATCGAAATACAGGCCAAGGAG
ATATTGTTCATTCGAAGCCTTTTGAATGGATACTTGTCGGGTGCAACAGG
TCAAGACCTGAGCACCATTGAACGCGACACGGATAGGGATTTCTTCATGA
CACCCGAAGAAGCTCTAGAGTACGGTATTATTGATGAGGTCATCCAGACG
AAGAGGTCCCTTCCAAAGCCACCGAAACCAGTTCTCCAATAA
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protein sequence of Ggra3669.t1

>Ggra3669.t1 ID=Ggra3669.t1|Name=Ggra3669.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=214bp
MDLRGPRPQKKPPAPVPMVTFGENQMDVYSRLAKDRILLLGRQVDDEVAN
ALVAQMLFLSADDPTKDITLYINSPGGSVNAGLAIFDAMQYIPCDVATIC
FGTAASMGAFLLSAGAKGKRKSLPNSRIMIHQPLGGAQGQAADIEIQAKE
ILFIRSLLNGYLSGATGQDLSTIERDTDRDFFMTPEEALEYGIIDEVIQT
KRSLPKPPKPVLQ*
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mRNA from alignment at tig00000850_pilon:1043177..1043818+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3669.t1 ID=Ggra3669.t1|Name=Ggra3669.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00000850_pilon:1043177..1043818+ (Gracilaria gracilis GNS1m male)
ATGGATCTTCGCGGACCGCGTCCTCAAAAGAAGCCCCCAGCGCCGGTGCC
CATGGTCACATTCGGCGAGAATCAAATGGACGTATATTCACGTCTCGCGA
AAGACCGCATTCTACTTCTTGGTCGTCAAGTCGATGATGAGGTGGCAAAC
GCGCTCGTTGCACAGATGCTGTTTCTTTCGGCAGATGATCCTACGAAAGA
CATTACGCTGTACATAAATTCCCCTGGAGGCTCAGTGAATGCCGGGCTTG
CTATTTTTGATGCTATGCAATACATACCTTGTGATGTTGCCACAATATGC
TTTGGAACTGCGGCTTCCATGGGAGCATTCTTGCTCTCGGCTGGTGCCAA
GGGAAAGAGAAAGAGTTTACCAAACTCTCGAATTATGATCCATCAACCTT
TGGGAGGTGCTCAAGGCCAAGCAGCTGATATCGAAATACAGGCCAAGGAG
ATATTGTTCATTCGAAGCCTTTTGAATGGATACTTGTCGGGTGCAACAGG
TCAAGACCTGAGCACCATTGAACGCGACACGGATAGGGATTTCTTCATGA
CACCCGAAGAAGCTCTAGAGTACGGTATTATTGATGAGGTCATCCAGACG
AAGAGGTCCCTTCCAAAGCCACCGAAACCAGTTCTCCAATAA
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Coding sequence (CDS) from alignment at tig00000850_pilon:1043177..1043818+

>Ggra3669.t1 ID=Ggra3669.t1|Name=Ggra3669.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=642bp|location=Sequence derived from alignment at tig00000850_pilon:1043177..1043818+ (Gracilaria gracilis GNS1m male)
ATGGATCTTCGCGGACCGCGTCCTCAAAAGAAGCCCCCAGCGCCGGTGCC
CATGGTCACATTCGGCGAGAATCAAATGGACGTATATTCACGTCTCGCGA
AAGACCGCATTCTACTTCTTGGTCGTCAAGTCGATGATGAGGTGGCAAAC
GCGCTCGTTGCACAGATGCTGTTTCTTTCGGCAGATGATCCTACGAAAGA
CATTACGCTGTACATAAATTCCCCTGGAGGCTCAGTGAATGCCGGGCTTG
CTATTTTTGATGCTATGCAATACATACCTTGTGATGTTGCCACAATATGC
TTTGGAACTGCGGCTTCCATGGGAGCATTCTTGCTCTCGGCTGGTGCCAA
GGGAAAGAGAAAGAGTTTACCAAACTCTCGAATTATGATCCATCAACCTT
TGGGAGGTGCTCAAGGCCAAGCAGCTGATATCGAAATACAGGCCAAGGAG
ATATTGTTCATTCGAAGCCTTTTGAATGGATACTTGTCGGGTGCAACAGG
TCAAGACCTGAGCACCATTGAACGCGACACGGATAGGGATTTCTTCATGA
CACCCGAAGAAGCTCTAGAGTACGGTATTATTGATGAGGTCATCCAGACG
AAGAGGTCCCTTCCAAAGCCACCGAAACCAGTTCTCCAATAA
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