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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 7176.CPIJ011163-PA |
| PFAMs | zf-AD,zf-C2H2,zf-C2H2_4,zf-C2H2_6,zf-met |
| Max annot lvl | 33208|Metazoa |
| KEGG ko | ko:K09228 |
| Evalue | 0.000229 |
| EggNOG OGs | KOG1721@1|root,KOG1721@2759|Eukaryota,38BZ9@33154|Opisthokonta,3BA9A@33208|Metazoa,3CT35@33213|Bilateria,422A9@6656|Arthropoda,3SR15@50557|Insecta,455ZH@7147|Diptera,45HP0@7148|Nematocera |
| Description | Zinc finger protein |
| COG category | S |
| BRITE | ko00000,ko03000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra3666.t1.start1 | Ggra3666.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000850_pilon 959127..959129 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra3666.t1.intron1 | Ggra3666.t1.intron1 | Gracilaria gracilis GNS1m male | intron | tig00000850_pilon 959424..959507 + |
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra3666.t1.stop1 | Ggra3666.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000850_pilon 961611..961613 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra3666.t1 ID=Ggra3666.t1|Name=Ggra3666.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=801bp MPSACTPSPPSLPAMADRLRTMYKKYMADPHVSQWLHLRRSAEDFRALHA NTAILLSVRPLHHSVQTALHYPNNPPPLFPITDDLIFLDHTHKHFALGHI WGDIDSDTHPYASLSKLVGNTVCDNATVRSRKFVTDTSAEHSMETVEYVW FHDDSAMVIISFTTFEPDQPIRYCSEVMFYAPLSPENSSTPLTQSPQFRM RVDRQDVCVDCNASSLCQCAQRRREAQGNASTVLSEDSVNGLDQHTNDDA IAADPKNHTASAFRGVASRWRRTFRTIFAGRRQGTLTLHAPVEKITPQLS FPYELLTRSGPTLTSRIQLHLLSRMPRTPPPPPPLALPSPPPPPHMLPLG ALGGSAQPRALCGTTRANYECPAERMPDTSLARILNTGHEQQPVAAHCTT SSPAFDASPDSTRAALTPALPSPLPLPTSEPPSKRPRTENARPDTFLFSL DSTWSPAFPEDTARASAQQQSMTQSMTQSMTQSMTAAAVAAAADRPFSAI TRVTHPQRSQSPLAYWSTFGKTPSPPALPLANSSNFFQRFPPTPHIDLPS PFDVVPNQQPDPASLARGPFTGAIQPVPDPLRPDLHHAALSDKHESSPLT APSLNIMEPIHVPESLALPLRVTTATTTSTGLAGLEGDQASRRGVRCEIC GLIFAKRGNKQRHIQTVHQGVKKFQCDICGSLFGLKADLNRHKYRLHESR SFSCDKCGKSFSQQVQLDQHVRVTHLQDNRPWKCNICFLRLGRKSSLTRH LQTVHQRTRFSCRICPKSYSQKFDAVRHEQRVHGVHPEMSGSSLRSLRHS * back to topspliced messenger RNA >Ggra3666.t1 ID=Ggra3666.t1|Name=Ggra3666.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2403bp|location=Sequence derived from alignment at tig00000850_pilon:959127..961613+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGCCCTCCGCGTGCACCCCGTCGCCGCCCTCTCTGCCCGCCATGGCTGA TCGTCTCAGAACCATGTACAAAAAGTACATGGCCGACCCCCATGTGTCGC AGTGGCTCCACCTCCGTCGTTCCGCCGAAGATTTCCGAGCCCTACACGCT AACACTGCCATTCTGCTCTCCGTTCGTCCGCTGCACCACAGCGTCCAGAC CGCCCTCCACTACCCCAACAACCCTCCCCCTCTGTTCCCCATCACTGACG ACCTTATTTTCCTTGACCATACGCACAAACACTTCGCACTCGGCCATATA TGGGGCGACATCGACAGCGACACTCACCCGTACGCCTCCCTGTCCAAACT CGTCGGCAACACAGTGTGCGACAATGCCACAGTACGCTCACGAAAGTTCG TCACAGACACCTCCGCTGAGCACTCCATGGAGACTGTCGAGTACGTTTGG TTCCATGACGACAGTGCAATGGTCATTATCTCGTTTACAACCTTTGAGCC CGACCAGCCGATACGTTATTGCTCCGAGGTCATGTTTTACGCGCCCCTAA GCCCTGAGAACTCCTCCACACCTTTAACCCAGAGTCCGCAATTCAGGATG CGCGTCGACCGCCAAGACGTGTGCGTCGACTGCAACGCCTCGTCGCTTTG CCAGTGTGCCCAAAGAAGACGTGAGGCACAAGGAAACGCATCCACCGTAC TCAGCGAAGACAGTGTCAACGGCCTTGACCAACACACTAATGACGACGCC ATAGCTGCCGATCCAAAGAACCACACTGCCAGCGCTTTCCGTGGCGTGGC TTCTCGTTGGCGCCGCACATTCCGCACCATCTTCGCCGGGCGGCGGCAGG GCACGCTCACACTGCACGCACCGGTTGAAAAGATAACTCCGCAGTTGTCA TTTCCCTACGAGCTTCTCACAAGAAGCGGGCCGACTCTCACATCTCGCAT CCAACTGCATTTGTTGTCTCGCATGccacgtaccccgccacctcctcctc cgctggcgcttccttcgccacctccaccgccacACATGCTGCCACTGGGC GCCTTGGGCGGATCGGCACAGCCGCGCGCTCTCTGTGGCACAACCAGGGC AAACTATGAGTGTCCGGCCGAGCGAATGCCCGACACGTCGCTGGCGCGGA TCCTCAACACTGGTCACGAGCAGCAGCCCGTGGCAGCGCACTGCACCACC TCATCGCCGGCGTTCGACGCCAGCCCCGACAGCACGAGAGCCGCGCTCAC GCCAGCGCTCCCGTCTCCACTTCCGCTCCCCACCTCTGAGCCGCCGTCCA AGCGTCCCCGCACTGAGAACGCCCGCCCTGACACGTTTCTGTTCTCACTG GACTCCACGTGGTCGCCGGCATTTCCCGAAGACACAGCGCGCGCGTCGGC GCAGCAGCAATCCATGACGCAATCCATGACGCAATCCATGACGCAATCCA TGACGGCGGCCGCCGTTGCCGCGGCGGCCGATCGACCGTTTTCAGCCATA ACTCGCGTCACCCACCCGCAGCGCAGCCAATCACCACTGGCATATTGGTC CACGTTCGGTAAGACGCCGTCGCCGCCGGCTCTCCCGCTGGCCAACTCTT CTAACTTTTTCCAGCGCTTTCCACCAACTCCGCATATCGATCTGCCGAGC CCATTCGACGTGGTTCCCAACCAGCAGCCAGACCCGGCCTCGCTCGCACG CGGACCGTTCACGGGAGCCATCCAGCCTGTGCCAGATCCTCTGCGTCCGG ACTTGCATCACGCAGCACTGTCCGACAAGCATGAGTCGTCTCCTCTTACG GCACCATCGCTTAACATCATGGAACCTATACACGTTCCGGAGTCGTTGGC GCTTCCGCTACGTGTCACGACGGCTACCACGACAAGCACCGGACTGGCGG GTTTGGAAGGCGACCAAGCGTCGCGAAGAGGAGTGCGGTGCGAAATCTGC GGGCTGATTTTCGCGAAGCGCGGAAACAAACAGCGTCATATCCAGACGGT TCACCAGGGGGTGAAGAAGTTTCAGTGCGACATCTGCGGCAGCCTTTTTG GACTCAAGGCGGATCTGAACCGACACAAGTACCGCCTCCACGAGTCTCGT TCGTTTTCTTGCGACAAGTGTGGTAAGAGTTTTTCACAGCAGGTGCAACT GGACCAACACGTTCGCGTGACGCACCTGCAGGATAATCGGCCGTGGAAGT GCAATATTTGTTTCCTTCGATTAGGACGCAAGTCTTCGCTGACGCGACAT CTGCAGACCGTTCACCAGAGGACGCGGTTTTCGTGCAGAATATGCCCCAA GTCGTACTCTCAGAAGTTCGATGCGGTGCGTCATGAGCAACGCGTTCACG GGGTCCATCCCGAAATGAGTGGTTCTTCGCTTCGTTCGCTTCGCCACTCA TAA back to topprotein sequence of Ggra3666.t1 >Ggra3666.t1 ID=Ggra3666.t1|Name=Ggra3666.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=801bp
MPSACTPSPPSLPAMADRLRTMYKKYMADPHVSQWLHLRRSAEDFRALHA NTAILLSVRPLHHSVQTALHYPNNPPPLFPITDDLIFLDHTHKHFALGHI WGDIDSDTHPYASLSKLVGNTVCDNATVRSRKFVTDTSAEHSMETVEYVW FHDDSAMVIISFTTFEPDQPIRYCSEVMFYAPLSPENSSTPLTQSPQFRM RVDRQDVCVDCNASSLCQCAQRRREAQGNASTVLSEDSVNGLDQHTNDDA IAADPKNHTASAFRGVASRWRRTFRTIFAGRRQGTLTLHAPVEKITPQLS FPYELLTRSGPTLTSRIQLHLLSRMPRTPPPPPPLALPSPPPPPHMLPLG ALGGSAQPRALCGTTRANYECPAERMPDTSLARILNTGHEQQPVAAHCTT SSPAFDASPDSTRAALTPALPSPLPLPTSEPPSKRPRTENARPDTFLFSL DSTWSPAFPEDTARASAQQQSMTQSMTQSMTQSMTAAAVAAAADRPFSAI TRVTHPQRSQSPLAYWSTFGKTPSPPALPLANSSNFFQRFPPTPHIDLPS PFDVVPNQQPDPASLARGPFTGAIQPVPDPLRPDLHHAALSDKHESSPLT APSLNIMEPIHVPESLALPLRVTTATTTSTGLAGLEGDQASRRGVRCEIC GLIFAKRGNKQRHIQTVHQGVKKFQCDICGSLFGLKADLNRHKYRLHESR SFSCDKCGKSFSQQVQLDQHVRVTHLQDNRPWKCNICFLRLGRKSSLTRH LQTVHQRTRFSCRICPKSYSQKFDAVRHEQRVHGVHPEMSGSSLRSLRHS * back to topmRNA from alignment at tig00000850_pilon:959127..961613+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra3666.t1 ID=Ggra3666.t1|Name=Ggra3666.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2487bp|location=Sequence derived from alignment at tig00000850_pilon:959127..961613+ (Gracilaria gracilis GNS1m male) ATGCCCTCCGCGTGCACCCCGTCGCCGCCCTCTCTGCCCGCCATGGCTGA
TCGTCTCAGAACCATGTACAAAAAGTACATGGCCGACCCCCATGTGTCGC
AGTGGCTCCACCTCCGTCGTTCCGCCGAAGATTTCCGAGCCCTACACGCT
AACACTGCCATTCTGCTCTCCGTTCGTCCGCTGCACCACAGCGTCCAGAC
CGCCCTCCACTACCCCAACAACCCTCCCCCTCTGTTCCCCATCACTGACG
ACCTTATTTTCCTTGACCATACGCACAAACACTTCGCACTCGGCCATGTA
AGTTACACTACCCTCATACCGCATCTGCCACATCCTTACTAACTCCCCTG
TCTTCGACCACCACCATTCCACCACGCGAAGATATGGGGCGACATCGACA
GCGACACTCACCCGTACGCCTCCCTGTCCAAACTCGTCGGCAACACAGTG
TGCGACAATGCCACAGTACGCTCACGAAAGTTCGTCACAGACACCTCCGC
TGAGCACTCCATGGAGACTGTCGAGTACGTTTGGTTCCATGACGACAGTG
CAATGGTCATTATCTCGTTTACAACCTTTGAGCCCGACCAGCCGATACGT
TATTGCTCCGAGGTCATGTTTTACGCGCCCCTAAGCCCTGAGAACTCCTC
CACACCTTTAACCCAGAGTCCGCAATTCAGGATGCGCGTCGACCGCCAAG
ACGTGTGCGTCGACTGCAACGCCTCGTCGCTTTGCCAGTGTGCCCAAAGA
AGACGTGAGGCACAAGGAAACGCATCCACCGTACTCAGCGAAGACAGTGT
CAACGGCCTTGACCAACACACTAATGACGACGCCATAGCTGCCGATCCAA
AGAACCACACTGCCAGCGCTTTCCGTGGCGTGGCTTCTCGTTGGCGCCGC
ACATTCCGCACCATCTTCGCCGGGCGGCGGCAGGGCACGCTCACACTGCA
CGCACCGGTTGAAAAGATAACTCCGCAGTTGTCATTTCCCTACGAGCTTC
TCACAAGAAGCGGGCCGACTCTCACATCTCGCATCCAACTGCATTTGTTG
TCTCGCATGccacgtaccccgccacctcctcctccgctggcgcttccttc
gccacctccaccgccacACATGCTGCCACTGGGCGCCTTGGGCGGATCGG
CACAGCCGCGCGCTCTCTGTGGCACAACCAGGGCAAACTATGAGTGTCCG
GCCGAGCGAATGCCCGACACGTCGCTGGCGCGGATCCTCAACACTGGTCA
CGAGCAGCAGCCCGTGGCAGCGCACTGCACCACCTCATCGCCGGCGTTCG
ACGCCAGCCCCGACAGCACGAGAGCCGCGCTCACGCCAGCGCTCCCGTCT
CCACTTCCGCTCCCCACCTCTGAGCCGCCGTCCAAGCGTCCCCGCACTGA
GAACGCCCGCCCTGACACGTTTCTGTTCTCACTGGACTCCACGTGGTCGC
CGGCATTTCCCGAAGACACAGCGCGCGCGTCGGCGCAGCAGCAATCCATG
ACGCAATCCATGACGCAATCCATGACGCAATCCATGACGGCGGCCGCCGT
TGCCGCGGCGGCCGATCGACCGTTTTCAGCCATAACTCGCGTCACCCACC
CGCAGCGCAGCCAATCACCACTGGCATATTGGTCCACGTTCGGTAAGACG
CCGTCGCCGCCGGCTCTCCCGCTGGCCAACTCTTCTAACTTTTTCCAGCG
CTTTCCACCAACTCCGCATATCGATCTGCCGAGCCCATTCGACGTGGTTC
CCAACCAGCAGCCAGACCCGGCCTCGCTCGCACGCGGACCGTTCACGGGA
GCCATCCAGCCTGTGCCAGATCCTCTGCGTCCGGACTTGCATCACGCAGC
ACTGTCCGACAAGCATGAGTCGTCTCCTCTTACGGCACCATCGCTTAACA
TCATGGAACCTATACACGTTCCGGAGTCGTTGGCGCTTCCGCTACGTGTC
ACGACGGCTACCACGACAAGCACCGGACTGGCGGGTTTGGAAGGCGACCA
AGCGTCGCGAAGAGGAGTGCGGTGCGAAATCTGCGGGCTGATTTTCGCGA
AGCGCGGAAACAAACAGCGTCATATCCAGACGGTTCACCAGGGGGTGAAG
AAGTTTCAGTGCGACATCTGCGGCAGCCTTTTTGGACTCAAGGCGGATCT
GAACCGACACAAGTACCGCCTCCACGAGTCTCGTTCGTTTTCTTGCGACA
AGTGTGGTAAGAGTTTTTCACAGCAGGTGCAACTGGACCAACACGTTCGC
GTGACGCACCTGCAGGATAATCGGCCGTGGAAGTGCAATATTTGTTTCCT
TCGATTAGGACGCAAGTCTTCGCTGACGCGACATCTGCAGACCGTTCACC
AGAGGACGCGGTTTTCGTGCAGAATATGCCCCAAGTCGTACTCTCAGAAG
TTCGATGCGGTGCGTCATGAGCAACGCGTTCACGGGGTCCATCCCGAAAT
GAGTGGTTCTTCGCTTCGTTCGCTTCGCCACTCATAA back to topCoding sequence (CDS) from alignment at tig00000850_pilon:959127..961613+ >Ggra3666.t1 ID=Ggra3666.t1|Name=Ggra3666.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2403bp|location=Sequence derived from alignment at tig00000850_pilon:959127..961613+ (Gracilaria gracilis GNS1m male) ATGCCCTCCGCGTGCACCCCGTCGCCGCCCTCTCTGCCCGCCATGGCTGA TCGTCTCAGAACCATGTACAAAAAGTACATGGCCGACCCCCATGTGTCGC AGTGGCTCCACCTCCGTCGTTCCGCCGAAGATTTCCGAGCCCTACACGCT AACACTGCCATTCTGCTCTCCGTTCGTCCGCTGCACCACAGCGTCCAGAC CGCCCTCCACTACCCCAACAACCCTCCCCCTCTGTTCCCCATCACTGACG ACCTTATTTTCCTTGACCATACGCACAAACACTTCGCACTCGGCCATATA TGGGGCGACATCGACAGCGACACTCACCCGTACGCCTCCCTGTCCAAACT CGTCGGCAACACAGTGTGCGACAATGCCACAGTACGCTCACGAAAGTTCG TCACAGACACCTCCGCTGAGCACTCCATGGAGACTGTCGAGTACGTTTGG TTCCATGACGACAGTGCAATGGTCATTATCTCGTTTACAACCTTTGAGCC CGACCAGCCGATACGTTATTGCTCCGAGGTCATGTTTTACGCGCCCCTAA GCCCTGAGAACTCCTCCACACCTTTAACCCAGAGTCCGCAATTCAGGATG CGCGTCGACCGCCAAGACGTGTGCGTCGACTGCAACGCCTCGTCGCTTTG CCAGTGTGCCCAAAGAAGACGTGAGGCACAAGGAAACGCATCCACCGTAC TCAGCGAAGACAGTGTCAACGGCCTTGACCAACACACTAATGACGACGCC ATAGCTGCCGATCCAAAGAACCACACTGCCAGCGCTTTCCGTGGCGTGGC TTCTCGTTGGCGCCGCACATTCCGCACCATCTTCGCCGGGCGGCGGCAGG GCACGCTCACACTGCACGCACCGGTTGAAAAGATAACTCCGCAGTTGTCA TTTCCCTACGAGCTTCTCACAAGAAGCGGGCCGACTCTCACATCTCGCAT CCAACTGCATTTGTTGTCTCGCATGccacgtaccccgccacctcctcctc cgctggcgcttccttcgccacctccaccgccacACATGCTGCCACTGGGC GCCTTGGGCGGATCGGCACAGCCGCGCGCTCTCTGTGGCACAACCAGGGC AAACTATGAGTGTCCGGCCGAGCGAATGCCCGACACGTCGCTGGCGCGGA TCCTCAACACTGGTCACGAGCAGCAGCCCGTGGCAGCGCACTGCACCACC TCATCGCCGGCGTTCGACGCCAGCCCCGACAGCACGAGAGCCGCGCTCAC GCCAGCGCTCCCGTCTCCACTTCCGCTCCCCACCTCTGAGCCGCCGTCCA AGCGTCCCCGCACTGAGAACGCCCGCCCTGACACGTTTCTGTTCTCACTG GACTCCACGTGGTCGCCGGCATTTCCCGAAGACACAGCGCGCGCGTCGGC GCAGCAGCAATCCATGACGCAATCCATGACGCAATCCATGACGCAATCCA TGACGGCGGCCGCCGTTGCCGCGGCGGCCGATCGACCGTTTTCAGCCATA ACTCGCGTCACCCACCCGCAGCGCAGCCAATCACCACTGGCATATTGGTC CACGTTCGGTAAGACGCCGTCGCCGCCGGCTCTCCCGCTGGCCAACTCTT CTAACTTTTTCCAGCGCTTTCCACCAACTCCGCATATCGATCTGCCGAGC CCATTCGACGTGGTTCCCAACCAGCAGCCAGACCCGGCCTCGCTCGCACG CGGACCGTTCACGGGAGCCATCCAGCCTGTGCCAGATCCTCTGCGTCCGG ACTTGCATCACGCAGCACTGTCCGACAAGCATGAGTCGTCTCCTCTTACG GCACCATCGCTTAACATCATGGAACCTATACACGTTCCGGAGTCGTTGGC GCTTCCGCTACGTGTCACGACGGCTACCACGACAAGCACCGGACTGGCGG GTTTGGAAGGCGACCAAGCGTCGCGAAGAGGAGTGCGGTGCGAAATCTGC GGGCTGATTTTCGCGAAGCGCGGAAACAAACAGCGTCATATCCAGACGGT TCACCAGGGGGTGAAGAAGTTTCAGTGCGACATCTGCGGCAGCCTTTTTG GACTCAAGGCGGATCTGAACCGACACAAGTACCGCCTCCACGAGTCTCGT TCGTTTTCTTGCGACAAGTGTGGTAAGAGTTTTTCACAGCAGGTGCAACT GGACCAACACGTTCGCGTGACGCACCTGCAGGATAATCGGCCGTGGAAGT GCAATATTTGTTTCCTTCGATTAGGACGCAAGTCTTCGCTGACGCGACAT CTGCAGACCGTTCACCAGAGGACGCGGTTTTCGTGCAGAATATGCCCCAA GTCGTACTCTCAGAAGTTCGATGCGGTGCGTCATGAGCAACGCGTTCACG GGGTCCATCCCGAAATGAGTGGTTCTTCGCTTCGTTCGCTTCGCCACTCA TAA back to top
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