Ggra3666.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3666.t1
Unique NameGgra3666.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length801
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:959127..961613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7176.CPIJ011163-PA
PFAMszf-AD,zf-C2H2,zf-C2H2_4,zf-C2H2_6,zf-met
Max annot lvl33208|Metazoa
KEGG koko:K09228
Evalue0.000229
EggNOG OGsKOG1721@1|root,KOG1721@2759|Eukaryota,38BZ9@33154|Opisthokonta,3BA9A@33208|Metazoa,3CT35@33213|Bilateria,422A9@6656|Arthropoda,3SR15@50557|Insecta,455ZH@7147|Diptera,45HP0@7148|Nematocera
DescriptionZinc finger protein
COG categoryS
BRITEko00000,ko03000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3666Ggra3666Gracilaria gracilis GNS1m malegenetig00000850_pilon 959127..961613 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3666.t1Ggra3666.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 959127..961613 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3666.t1.start1Ggra3666.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 959127..959129 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3666.t1.CDS1Ggra3666.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 959127..959423 +
Ggra3666.t1.CDS2Ggra3666.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000850_pilon 959508..961613 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3666.t1.exon1Ggra3666.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 959127..959423 +
Ggra3666.t1.exon2Ggra3666.t1.exon2Gracilaria gracilis GNS1m maleexontig00000850_pilon 959508..961613 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3666.t1.intron1Ggra3666.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000850_pilon 959424..959507 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3666.t1.stop1Ggra3666.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 961611..961613 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3666.t1 ID=Ggra3666.t1|Name=Ggra3666.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=801bp
MPSACTPSPPSLPAMADRLRTMYKKYMADPHVSQWLHLRRSAEDFRALHA
NTAILLSVRPLHHSVQTALHYPNNPPPLFPITDDLIFLDHTHKHFALGHI
WGDIDSDTHPYASLSKLVGNTVCDNATVRSRKFVTDTSAEHSMETVEYVW
FHDDSAMVIISFTTFEPDQPIRYCSEVMFYAPLSPENSSTPLTQSPQFRM
RVDRQDVCVDCNASSLCQCAQRRREAQGNASTVLSEDSVNGLDQHTNDDA
IAADPKNHTASAFRGVASRWRRTFRTIFAGRRQGTLTLHAPVEKITPQLS
FPYELLTRSGPTLTSRIQLHLLSRMPRTPPPPPPLALPSPPPPPHMLPLG
ALGGSAQPRALCGTTRANYECPAERMPDTSLARILNTGHEQQPVAAHCTT
SSPAFDASPDSTRAALTPALPSPLPLPTSEPPSKRPRTENARPDTFLFSL
DSTWSPAFPEDTARASAQQQSMTQSMTQSMTQSMTAAAVAAAADRPFSAI
TRVTHPQRSQSPLAYWSTFGKTPSPPALPLANSSNFFQRFPPTPHIDLPS
PFDVVPNQQPDPASLARGPFTGAIQPVPDPLRPDLHHAALSDKHESSPLT
APSLNIMEPIHVPESLALPLRVTTATTTSTGLAGLEGDQASRRGVRCEIC
GLIFAKRGNKQRHIQTVHQGVKKFQCDICGSLFGLKADLNRHKYRLHESR
SFSCDKCGKSFSQQVQLDQHVRVTHLQDNRPWKCNICFLRLGRKSSLTRH
LQTVHQRTRFSCRICPKSYSQKFDAVRHEQRVHGVHPEMSGSSLRSLRHS
*
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spliced messenger RNA

>Ggra3666.t1 ID=Ggra3666.t1|Name=Ggra3666.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2403bp|location=Sequence derived from alignment at tig00000850_pilon:959127..961613+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCTCCGCGTGCACCCCGTCGCCGCCCTCTCTGCCCGCCATGGCTGA
TCGTCTCAGAACCATGTACAAAAAGTACATGGCCGACCCCCATGTGTCGC
AGTGGCTCCACCTCCGTCGTTCCGCCGAAGATTTCCGAGCCCTACACGCT
AACACTGCCATTCTGCTCTCCGTTCGTCCGCTGCACCACAGCGTCCAGAC
CGCCCTCCACTACCCCAACAACCCTCCCCCTCTGTTCCCCATCACTGACG
ACCTTATTTTCCTTGACCATACGCACAAACACTTCGCACTCGGCCATATA
TGGGGCGACATCGACAGCGACACTCACCCGTACGCCTCCCTGTCCAAACT
CGTCGGCAACACAGTGTGCGACAATGCCACAGTACGCTCACGAAAGTTCG
TCACAGACACCTCCGCTGAGCACTCCATGGAGACTGTCGAGTACGTTTGG
TTCCATGACGACAGTGCAATGGTCATTATCTCGTTTACAACCTTTGAGCC
CGACCAGCCGATACGTTATTGCTCCGAGGTCATGTTTTACGCGCCCCTAA
GCCCTGAGAACTCCTCCACACCTTTAACCCAGAGTCCGCAATTCAGGATG
CGCGTCGACCGCCAAGACGTGTGCGTCGACTGCAACGCCTCGTCGCTTTG
CCAGTGTGCCCAAAGAAGACGTGAGGCACAAGGAAACGCATCCACCGTAC
TCAGCGAAGACAGTGTCAACGGCCTTGACCAACACACTAATGACGACGCC
ATAGCTGCCGATCCAAAGAACCACACTGCCAGCGCTTTCCGTGGCGTGGC
TTCTCGTTGGCGCCGCACATTCCGCACCATCTTCGCCGGGCGGCGGCAGG
GCACGCTCACACTGCACGCACCGGTTGAAAAGATAACTCCGCAGTTGTCA
TTTCCCTACGAGCTTCTCACAAGAAGCGGGCCGACTCTCACATCTCGCAT
CCAACTGCATTTGTTGTCTCGCATGccacgtaccccgccacctcctcctc
cgctggcgcttccttcgccacctccaccgccacACATGCTGCCACTGGGC
GCCTTGGGCGGATCGGCACAGCCGCGCGCTCTCTGTGGCACAACCAGGGC
AAACTATGAGTGTCCGGCCGAGCGAATGCCCGACACGTCGCTGGCGCGGA
TCCTCAACACTGGTCACGAGCAGCAGCCCGTGGCAGCGCACTGCACCACC
TCATCGCCGGCGTTCGACGCCAGCCCCGACAGCACGAGAGCCGCGCTCAC
GCCAGCGCTCCCGTCTCCACTTCCGCTCCCCACCTCTGAGCCGCCGTCCA
AGCGTCCCCGCACTGAGAACGCCCGCCCTGACACGTTTCTGTTCTCACTG
GACTCCACGTGGTCGCCGGCATTTCCCGAAGACACAGCGCGCGCGTCGGC
GCAGCAGCAATCCATGACGCAATCCATGACGCAATCCATGACGCAATCCA
TGACGGCGGCCGCCGTTGCCGCGGCGGCCGATCGACCGTTTTCAGCCATA
ACTCGCGTCACCCACCCGCAGCGCAGCCAATCACCACTGGCATATTGGTC
CACGTTCGGTAAGACGCCGTCGCCGCCGGCTCTCCCGCTGGCCAACTCTT
CTAACTTTTTCCAGCGCTTTCCACCAACTCCGCATATCGATCTGCCGAGC
CCATTCGACGTGGTTCCCAACCAGCAGCCAGACCCGGCCTCGCTCGCACG
CGGACCGTTCACGGGAGCCATCCAGCCTGTGCCAGATCCTCTGCGTCCGG
ACTTGCATCACGCAGCACTGTCCGACAAGCATGAGTCGTCTCCTCTTACG
GCACCATCGCTTAACATCATGGAACCTATACACGTTCCGGAGTCGTTGGC
GCTTCCGCTACGTGTCACGACGGCTACCACGACAAGCACCGGACTGGCGG
GTTTGGAAGGCGACCAAGCGTCGCGAAGAGGAGTGCGGTGCGAAATCTGC
GGGCTGATTTTCGCGAAGCGCGGAAACAAACAGCGTCATATCCAGACGGT
TCACCAGGGGGTGAAGAAGTTTCAGTGCGACATCTGCGGCAGCCTTTTTG
GACTCAAGGCGGATCTGAACCGACACAAGTACCGCCTCCACGAGTCTCGT
TCGTTTTCTTGCGACAAGTGTGGTAAGAGTTTTTCACAGCAGGTGCAACT
GGACCAACACGTTCGCGTGACGCACCTGCAGGATAATCGGCCGTGGAAGT
GCAATATTTGTTTCCTTCGATTAGGACGCAAGTCTTCGCTGACGCGACAT
CTGCAGACCGTTCACCAGAGGACGCGGTTTTCGTGCAGAATATGCCCCAA
GTCGTACTCTCAGAAGTTCGATGCGGTGCGTCATGAGCAACGCGTTCACG
GGGTCCATCCCGAAATGAGTGGTTCTTCGCTTCGTTCGCTTCGCCACTCA
TAA
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protein sequence of Ggra3666.t1

>Ggra3666.t1 ID=Ggra3666.t1|Name=Ggra3666.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=801bp
MPSACTPSPPSLPAMADRLRTMYKKYMADPHVSQWLHLRRSAEDFRALHA
NTAILLSVRPLHHSVQTALHYPNNPPPLFPITDDLIFLDHTHKHFALGHI
WGDIDSDTHPYASLSKLVGNTVCDNATVRSRKFVTDTSAEHSMETVEYVW
FHDDSAMVIISFTTFEPDQPIRYCSEVMFYAPLSPENSSTPLTQSPQFRM
RVDRQDVCVDCNASSLCQCAQRRREAQGNASTVLSEDSVNGLDQHTNDDA
IAADPKNHTASAFRGVASRWRRTFRTIFAGRRQGTLTLHAPVEKITPQLS
FPYELLTRSGPTLTSRIQLHLLSRMPRTPPPPPPLALPSPPPPPHMLPLG
ALGGSAQPRALCGTTRANYECPAERMPDTSLARILNTGHEQQPVAAHCTT
SSPAFDASPDSTRAALTPALPSPLPLPTSEPPSKRPRTENARPDTFLFSL
DSTWSPAFPEDTARASAQQQSMTQSMTQSMTQSMTAAAVAAAADRPFSAI
TRVTHPQRSQSPLAYWSTFGKTPSPPALPLANSSNFFQRFPPTPHIDLPS
PFDVVPNQQPDPASLARGPFTGAIQPVPDPLRPDLHHAALSDKHESSPLT
APSLNIMEPIHVPESLALPLRVTTATTTSTGLAGLEGDQASRRGVRCEIC
GLIFAKRGNKQRHIQTVHQGVKKFQCDICGSLFGLKADLNRHKYRLHESR
SFSCDKCGKSFSQQVQLDQHVRVTHLQDNRPWKCNICFLRLGRKSSLTRH
LQTVHQRTRFSCRICPKSYSQKFDAVRHEQRVHGVHPEMSGSSLRSLRHS
*
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mRNA from alignment at tig00000850_pilon:959127..961613+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3666.t1 ID=Ggra3666.t1|Name=Ggra3666.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2487bp|location=Sequence derived from alignment at tig00000850_pilon:959127..961613+ (Gracilaria gracilis GNS1m male)
ATGCCCTCCGCGTGCACCCCGTCGCCGCCCTCTCTGCCCGCCATGGCTGA TCGTCTCAGAACCATGTACAAAAAGTACATGGCCGACCCCCATGTGTCGC AGTGGCTCCACCTCCGTCGTTCCGCCGAAGATTTCCGAGCCCTACACGCT AACACTGCCATTCTGCTCTCCGTTCGTCCGCTGCACCACAGCGTCCAGAC CGCCCTCCACTACCCCAACAACCCTCCCCCTCTGTTCCCCATCACTGACG ACCTTATTTTCCTTGACCATACGCACAAACACTTCGCACTCGGCCATGTA AGTTACACTACCCTCATACCGCATCTGCCACATCCTTACTAACTCCCCTG TCTTCGACCACCACCATTCCACCACGCGAAGATATGGGGCGACATCGACA GCGACACTCACCCGTACGCCTCCCTGTCCAAACTCGTCGGCAACACAGTG TGCGACAATGCCACAGTACGCTCACGAAAGTTCGTCACAGACACCTCCGC TGAGCACTCCATGGAGACTGTCGAGTACGTTTGGTTCCATGACGACAGTG CAATGGTCATTATCTCGTTTACAACCTTTGAGCCCGACCAGCCGATACGT TATTGCTCCGAGGTCATGTTTTACGCGCCCCTAAGCCCTGAGAACTCCTC CACACCTTTAACCCAGAGTCCGCAATTCAGGATGCGCGTCGACCGCCAAG ACGTGTGCGTCGACTGCAACGCCTCGTCGCTTTGCCAGTGTGCCCAAAGA AGACGTGAGGCACAAGGAAACGCATCCACCGTACTCAGCGAAGACAGTGT CAACGGCCTTGACCAACACACTAATGACGACGCCATAGCTGCCGATCCAA AGAACCACACTGCCAGCGCTTTCCGTGGCGTGGCTTCTCGTTGGCGCCGC ACATTCCGCACCATCTTCGCCGGGCGGCGGCAGGGCACGCTCACACTGCA CGCACCGGTTGAAAAGATAACTCCGCAGTTGTCATTTCCCTACGAGCTTC TCACAAGAAGCGGGCCGACTCTCACATCTCGCATCCAACTGCATTTGTTG TCTCGCATGccacgtaccccgccacctcctcctccgctggcgcttccttc gccacctccaccgccacACATGCTGCCACTGGGCGCCTTGGGCGGATCGG CACAGCCGCGCGCTCTCTGTGGCACAACCAGGGCAAACTATGAGTGTCCG GCCGAGCGAATGCCCGACACGTCGCTGGCGCGGATCCTCAACACTGGTCA CGAGCAGCAGCCCGTGGCAGCGCACTGCACCACCTCATCGCCGGCGTTCG ACGCCAGCCCCGACAGCACGAGAGCCGCGCTCACGCCAGCGCTCCCGTCT CCACTTCCGCTCCCCACCTCTGAGCCGCCGTCCAAGCGTCCCCGCACTGA GAACGCCCGCCCTGACACGTTTCTGTTCTCACTGGACTCCACGTGGTCGC CGGCATTTCCCGAAGACACAGCGCGCGCGTCGGCGCAGCAGCAATCCATG ACGCAATCCATGACGCAATCCATGACGCAATCCATGACGGCGGCCGCCGT TGCCGCGGCGGCCGATCGACCGTTTTCAGCCATAACTCGCGTCACCCACC CGCAGCGCAGCCAATCACCACTGGCATATTGGTCCACGTTCGGTAAGACG CCGTCGCCGCCGGCTCTCCCGCTGGCCAACTCTTCTAACTTTTTCCAGCG CTTTCCACCAACTCCGCATATCGATCTGCCGAGCCCATTCGACGTGGTTC CCAACCAGCAGCCAGACCCGGCCTCGCTCGCACGCGGACCGTTCACGGGA GCCATCCAGCCTGTGCCAGATCCTCTGCGTCCGGACTTGCATCACGCAGC ACTGTCCGACAAGCATGAGTCGTCTCCTCTTACGGCACCATCGCTTAACA TCATGGAACCTATACACGTTCCGGAGTCGTTGGCGCTTCCGCTACGTGTC ACGACGGCTACCACGACAAGCACCGGACTGGCGGGTTTGGAAGGCGACCA AGCGTCGCGAAGAGGAGTGCGGTGCGAAATCTGCGGGCTGATTTTCGCGA AGCGCGGAAACAAACAGCGTCATATCCAGACGGTTCACCAGGGGGTGAAG AAGTTTCAGTGCGACATCTGCGGCAGCCTTTTTGGACTCAAGGCGGATCT GAACCGACACAAGTACCGCCTCCACGAGTCTCGTTCGTTTTCTTGCGACA AGTGTGGTAAGAGTTTTTCACAGCAGGTGCAACTGGACCAACACGTTCGC GTGACGCACCTGCAGGATAATCGGCCGTGGAAGTGCAATATTTGTTTCCT TCGATTAGGACGCAAGTCTTCGCTGACGCGACATCTGCAGACCGTTCACC AGAGGACGCGGTTTTCGTGCAGAATATGCCCCAAGTCGTACTCTCAGAAG TTCGATGCGGTGCGTCATGAGCAACGCGTTCACGGGGTCCATCCCGAAAT GAGTGGTTCTTCGCTTCGTTCGCTTCGCCACTCATAA
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Coding sequence (CDS) from alignment at tig00000850_pilon:959127..961613+

>Ggra3666.t1 ID=Ggra3666.t1|Name=Ggra3666.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2403bp|location=Sequence derived from alignment at tig00000850_pilon:959127..961613+ (Gracilaria gracilis GNS1m male)
ATGCCCTCCGCGTGCACCCCGTCGCCGCCCTCTCTGCCCGCCATGGCTGA
TCGTCTCAGAACCATGTACAAAAAGTACATGGCCGACCCCCATGTGTCGC
AGTGGCTCCACCTCCGTCGTTCCGCCGAAGATTTCCGAGCCCTACACGCT
AACACTGCCATTCTGCTCTCCGTTCGTCCGCTGCACCACAGCGTCCAGAC
CGCCCTCCACTACCCCAACAACCCTCCCCCTCTGTTCCCCATCACTGACG
ACCTTATTTTCCTTGACCATACGCACAAACACTTCGCACTCGGCCATATA
TGGGGCGACATCGACAGCGACACTCACCCGTACGCCTCCCTGTCCAAACT
CGTCGGCAACACAGTGTGCGACAATGCCACAGTACGCTCACGAAAGTTCG
TCACAGACACCTCCGCTGAGCACTCCATGGAGACTGTCGAGTACGTTTGG
TTCCATGACGACAGTGCAATGGTCATTATCTCGTTTACAACCTTTGAGCC
CGACCAGCCGATACGTTATTGCTCCGAGGTCATGTTTTACGCGCCCCTAA
GCCCTGAGAACTCCTCCACACCTTTAACCCAGAGTCCGCAATTCAGGATG
CGCGTCGACCGCCAAGACGTGTGCGTCGACTGCAACGCCTCGTCGCTTTG
CCAGTGTGCCCAAAGAAGACGTGAGGCACAAGGAAACGCATCCACCGTAC
TCAGCGAAGACAGTGTCAACGGCCTTGACCAACACACTAATGACGACGCC
ATAGCTGCCGATCCAAAGAACCACACTGCCAGCGCTTTCCGTGGCGTGGC
TTCTCGTTGGCGCCGCACATTCCGCACCATCTTCGCCGGGCGGCGGCAGG
GCACGCTCACACTGCACGCACCGGTTGAAAAGATAACTCCGCAGTTGTCA
TTTCCCTACGAGCTTCTCACAAGAAGCGGGCCGACTCTCACATCTCGCAT
CCAACTGCATTTGTTGTCTCGCATGccacgtaccccgccacctcctcctc
cgctggcgcttccttcgccacctccaccgccacACATGCTGCCACTGGGC
GCCTTGGGCGGATCGGCACAGCCGCGCGCTCTCTGTGGCACAACCAGGGC
AAACTATGAGTGTCCGGCCGAGCGAATGCCCGACACGTCGCTGGCGCGGA
TCCTCAACACTGGTCACGAGCAGCAGCCCGTGGCAGCGCACTGCACCACC
TCATCGCCGGCGTTCGACGCCAGCCCCGACAGCACGAGAGCCGCGCTCAC
GCCAGCGCTCCCGTCTCCACTTCCGCTCCCCACCTCTGAGCCGCCGTCCA
AGCGTCCCCGCACTGAGAACGCCCGCCCTGACACGTTTCTGTTCTCACTG
GACTCCACGTGGTCGCCGGCATTTCCCGAAGACACAGCGCGCGCGTCGGC
GCAGCAGCAATCCATGACGCAATCCATGACGCAATCCATGACGCAATCCA
TGACGGCGGCCGCCGTTGCCGCGGCGGCCGATCGACCGTTTTCAGCCATA
ACTCGCGTCACCCACCCGCAGCGCAGCCAATCACCACTGGCATATTGGTC
CACGTTCGGTAAGACGCCGTCGCCGCCGGCTCTCCCGCTGGCCAACTCTT
CTAACTTTTTCCAGCGCTTTCCACCAACTCCGCATATCGATCTGCCGAGC
CCATTCGACGTGGTTCCCAACCAGCAGCCAGACCCGGCCTCGCTCGCACG
CGGACCGTTCACGGGAGCCATCCAGCCTGTGCCAGATCCTCTGCGTCCGG
ACTTGCATCACGCAGCACTGTCCGACAAGCATGAGTCGTCTCCTCTTACG
GCACCATCGCTTAACATCATGGAACCTATACACGTTCCGGAGTCGTTGGC
GCTTCCGCTACGTGTCACGACGGCTACCACGACAAGCACCGGACTGGCGG
GTTTGGAAGGCGACCAAGCGTCGCGAAGAGGAGTGCGGTGCGAAATCTGC
GGGCTGATTTTCGCGAAGCGCGGAAACAAACAGCGTCATATCCAGACGGT
TCACCAGGGGGTGAAGAAGTTTCAGTGCGACATCTGCGGCAGCCTTTTTG
GACTCAAGGCGGATCTGAACCGACACAAGTACCGCCTCCACGAGTCTCGT
TCGTTTTCTTGCGACAAGTGTGGTAAGAGTTTTTCACAGCAGGTGCAACT
GGACCAACACGTTCGCGTGACGCACCTGCAGGATAATCGGCCGTGGAAGT
GCAATATTTGTTTCCTTCGATTAGGACGCAAGTCTTCGCTGACGCGACAT
CTGCAGACCGTTCACCAGAGGACGCGGTTTTCGTGCAGAATATGCCCCAA
GTCGTACTCTCAGAAGTTCGATGCGGTGCGTCATGAGCAACGCGTTCACG
GGGTCCATCCCGAAATGAGTGGTTCTTCGCTTCGTTCGCTTCGCCACTCA
TAA
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