Ggra3663.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3663.t1
Unique NameGgra3663.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length401
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:889381..894087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3663Ggra3663Gracilaria gracilis GNS1m malegenetig00000850_pilon 889381..894087 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3663.t1Ggra3663.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 889381..894087 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3663.t1.start1Ggra3663.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 889381..889383 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3663.t1.CDS1Ggra3663.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 889381..889386 +
Ggra3663.t1.CDS2Ggra3663.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000850_pilon 889491..889497 +
Ggra3663.t1.CDS3Ggra3663.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000850_pilon 892898..894087 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3663.t1.exon1Ggra3663.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 889381..889386 +
Ggra3663.t1.exon2Ggra3663.t1.exon2Gracilaria gracilis GNS1m maleexontig00000850_pilon 889491..889497 +
Ggra3663.t1.exon3Ggra3663.t1.exon3Gracilaria gracilis GNS1m maleexontig00000850_pilon 892898..894087 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3663.t1.intron1Ggra3663.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000850_pilon 889387..889490 +
Ggra3663.t1.intron2Ggra3663.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000850_pilon 889498..892897 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3663.t1.stop1Ggra3663.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 894085..894087 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3663.t1 ID=Ggra3663.t1|Name=Ggra3663.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=401bp
LKNMPPITSTLKAVDGFPDKVSRTLDKLRQTEDAILKAQRDKIQTLTKSR
LRGQRTRHALQSLLPTCNSEDTAWFSAAKSMIEAVFNRTTWIPCVTDVFP
EGEEELEWYDVISQFRQALNDSAALINEQAEARFANPDTVYNFPHETGTE
RCLINAIGAFRVDDSWFVNVAITNELKSHHLGDRKRYFLVELMGRDGTHA
NMTLGVIPPAPSPDPAAYYRRSDASTLSVDHIGPASPDFFKPTLFENNIA
LARALEKSQLYMQQAHEARSASSIAILFLPLFLNILPIALFADVSRLIML
FYALLSDVLTTLPLAIKGIELILTGSERNVGVVVRMTSFHDGTRMNESAA
EVYVASCQPSKGVVNAGITFLVIAMVFLVVGLVLEVVARQRVQGWRRKLM
*
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spliced messenger RNA

>Ggra3663.t1 ID=Ggra3663.t1|Name=Ggra3663.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1203bp|location=Sequence derived from alignment at tig00000850_pilon:889381..894087+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ttgaaaaacatgcCTCCCATCACCAGCACGCTGAAAGCAGTGGATGGCTT
TCCAGACAAGGTTAGCAGAACGCTGGATAAGCTGCGTCAAACAGAGGACG
CAATTCTGAAGGCGCAACGAGACAAAATACAAACGCTTACCAAGTCTCGT
TTGCGAGGACAACGAACTCGCCATGCACTTCAATCGTTGCTACCGACATG
CAACTCGGAGGATACTGCTTGGTTCTCCGCAGCGAAGTCAATGATTGAAG
CCGTGTTCAATCGAACCACCTGGATCCCGTGCGTGACGGACGTGTTTCCT
GAAGGCGAAGAAGAGCTTGAGTGGTATGATGTGATCTCTCAATTCCGACA
GGCACTTAATGACAGTGCTGCTTTGATCAATGAACAGGCTGAAGCTAGAT
TTGCCAATCCGGATACTGTCTATAACTTTCCACACGAAACGGGTACGGAA
AGATGTTTAATAAATGCTATCGGTGCGTTTCGGGTGGATGACTCTTGGTT
TGTCAATGTCGCAATCACCAATGAATTGAAGTCACACCATTTAGGGGATC
GTAAGCGATATTTTCTGGTGGAACTTATGGGCAGGGATGGCACGCACGCA
AATATGACTTTGGGTGTCATTCCTCCTGCTCCTAGCCCTGATCCGGCTGC
TTATTACAGACGTTCTGATGCCAGCACTCTCAGCGTCGATCATATCGGCC
CTGCCTCACCGGATTTCTTCAAACCTACGTTGTTTGAAAACAACATCGCG
CTGGCGAGGGCGCTTGAAAAGTCTCAGTTGTACATGCAACAGGCTCACGA
AGCGAGAAGTGCGTCAAGCATTGCGATTCTATTTCTGCCACTCTTTCTTA
ACATTCTTCCAATTGCTCTGTTTGCCGATGTGAGCAGACTAATCATGTTG
TTTTATGCTTTGTTAAGCGATGTGCTAACGACATTGCCACTGGCAATCAA
AGGAATTGAACTGATACTGACCGGGTCAGAAAGAAATGTGGGCGTTGTAG
TTCGAATGACTTCCTTTCACGACGGTACGAGAATGAATGAGAGCGCGGCG
GAAGTTTACGTAGCGTCATGCCAGCCATCGAAGGGTGTTGTGAACGCTGG
CATTACCTTCCTGGTGATTGCGATGGTTTTCTTAGTGGTTGGGCTTGTTT
TAGAAGTGGTGGCCAGACAACGTGTGCAGGGATGGAGAAGAAAGTTAATG
TGA
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protein sequence of Ggra3663.t1

>Ggra3663.t1 ID=Ggra3663.t1|Name=Ggra3663.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=401bp
LKNMPPITSTLKAVDGFPDKVSRTLDKLRQTEDAILKAQRDKIQTLTKSR
LRGQRTRHALQSLLPTCNSEDTAWFSAAKSMIEAVFNRTTWIPCVTDVFP
EGEEELEWYDVISQFRQALNDSAALINEQAEARFANPDTVYNFPHETGTE
RCLINAIGAFRVDDSWFVNVAITNELKSHHLGDRKRYFLVELMGRDGTHA
NMTLGVIPPAPSPDPAAYYRRSDASTLSVDHIGPASPDFFKPTLFENNIA
LARALEKSQLYMQQAHEARSASSIAILFLPLFLNILPIALFADVSRLIML
FYALLSDVLTTLPLAIKGIELILTGSERNVGVVVRMTSFHDGTRMNESAA
EVYVASCQPSKGVVNAGITFLVIAMVFLVVGLVLEVVARQRVQGWRRKLM
*
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mRNA from alignment at tig00000850_pilon:889381..894087+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3663.t1 ID=Ggra3663.t1|Name=Ggra3663.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=4707bp|location=Sequence derived from alignment at tig00000850_pilon:889381..894087+ (Gracilaria gracilis GNS1m male)
ttgaaagtaagtttggtactctcaacgctcttttagcacataacactcta
ctaacgtccctctcacccacttcgttcggtaaccaaatatgaaacaacac
tatcatgaagaacatgcgtcttctccagatttggctcttgctctgccaat
acacggccggttttgtgttcatttctgtcccgtttttcttccaccctcct
ccatcacgccgccggatatcaaagaccagaaagtatcatagacaagcgct
aatcaaaccaatcctgacaaactgttcaactccatggtaccaactactct
catgtggtggagaggatgactttgtgacggcgctgaatatcacaaaaccg
cagcttaccccgtactcctcccacctttccaaaacgcgttgcgaacacaa
ccaaagcggtctccatatgcaacacgaaacgctaaacagggacggaaggc
tatgctacgtacagttgatattctcggactttccctttggtacgttcgta
gcggagataccatgtatagcttgtgtcctatatgtggcttagtaccatct
tcaatcagtgcatggcttgattttgcactatccgtgctgcacgacgtggt
aacgtccaacacaataaccgaaaccagaattgaatggccaacgaactctg
aaatggaatcttcggcgacgttactggctcaagcgagaccgctaaccgcg
cagtacttatcgggcgtgtttgctgtaacagatggagctcgcattaaatg
ctcagcaccgcaggagagccggatacaacgagcattttacaacggcttca
cgggttccgtagagattgttaacctttttgtttggaacttcggtggagaa
ctaatacatgcagccgtgaactacccgggttcctgtcatgactcacggct
ggccgggatctctggattgtactggcccagattgtcggaagaaatgacgc
ctttcccatttagaatcctcggtgacagtgcatttgctacgaacttgacc
gcgacagacaacaaactcgtgcgaacacggaaggtgaacgagcgatatat
accacgttccatcgaggaagacgccattgatatgatcttacagaagattt
acccgtcaaggcgccagacagcagagtggggtgtgcaagctctcaaaggt
ccctttcgcagattgtcttgtttgctacctgtaaatgcttgggctcggct
acgcataatggtcatctgttgccatctgatgaacttccgaacacgaacaa
ttggtcataatcagattagaacagtgtacgctcggtactagaggcggttc
gactaccaaacggtgtgagagggttacgttccgaatcgttcttcggagca
tgcggcggtgtttcggcttcgatttcgttaccatctgtagcattcttggc
cttctcaaggcgaagtgcggcaccaagctcttctcggataatctcccgca
ggtgcgtgagatcgtaattcggaggttgagtctgcgaggccttgattaat
tcggcaacagaaagcatggaagacgtcatagtctccatgtgcctgactac
gtccacttgcaatctgcgttctaacgaaaaatcgactacatgcttcgctc
tcttcgctgcaggtttcgctacagtactggatgatgctcctgtgtcgggc
tctgattcgtttcgcgttcttttctttgcaaagaatccaagaagggaacc
acgttgctttgctccctggatatcctccgttgaggggttcatgttaccat
ctggtcttcccaatgctttcgaaagggcttttgcctgtatatcccggtag
ataatctttgcgcggcgaacatgggggggaattgtcgggtctccagtctt
tttcctgacttaggcaagtttatcaaacttgtctttgagactgtctacgc
ttcttgtcggacgttcattcaaatttgcccagtggttaaagtctgactgt
accagctcccaatcttctgtatcatgtggttcgcggtttgcgacgacatc
cagtagaaagtcgatgtcttccgcccagtagttgagtgctcccttacgga
aatgggcgttcttcttgtaaagtgagccaactgcatccatgacaatgtct
tgaagtttgctcgtttgaatgcttatatatccggtggtatggaatcgttt
ggggcggacaaagaatgaatgcgatagtgcaactccgtccaggtgaattt
tgccgcagaagtgacaccgaaactccatggtaccatggaaccgaaacgac
cgtgcacttgaagtgcatggcggtcaaatagtgtttgtgtcggtagttgc
acggttttgtatgtaccatgtaaccattaggaagtgttcaagggcctctc
tttgtcgccttgtcactttggcttttcttggacgaccccactgTGTGATA
CCCCCCCCCCTGATGTTGCAGCGCACTCTTCCTCGATTCATTAGCGTTCT
GCCTCCGCATCATGCGATGATCTTGTCATGCAACATGGAACTCTTGCACC
AAACTACAAAGGTACAGTAGCCTTCTGGTTTGGTTAGCCTGCACGAGCTT
TCTTCGTGACCAGACCAGCCGTTGCGCCAAAGTCACACGTAGCATAAATC
TCAACGGAATATCTACAATAACATTGCTGTTGCTGCATTGCTAGACTTCC
TGCCACAGGATGACGCCCGTTTGGAACTACACGTACTGCTGGTAAGGGTT
AACTTCAGGAGTTGAGCAGATTGCTAATTTTTGAAACAAACAAACAACTG
GGTCCAAAGTTTGGAAGCTGGTGCCATTTTATATCGACGTGGCATTAATG
AGGACCTCACTTCCCTCGAGCAGAAATCTGTGCCAAAGTTGTCAACCACT
GATTCGCCGTGGTCCACATAATGAGCAGCAATACAATGCGTGTGTGTGTC
GTCGAGTCGGTCCGCACTCCATTCTGATCCACACCAGGCAGCGAGACTTC
GCAAAGTTGACGCTTCACGGAAGAATGTTCTGAGATCGCGAAAATCTCAG
TTTGCATAGACGACCCATTACCACAGCGCCCCTGTCCGCCATAATGTGCA
ATTGAAGTAACGGGACAAGGGTACATAACGTAATCCTCACCGCTGTAGGA
CCGCTATCCTTATCCTTACCTCACATCAGAATAGCTGTTACGAACACTGC
GTGCCATAGCCATTTACGAAGATACGGGCGCCCCCTACCTCCGTCGCCTC
TGCTTGGCGCACCACCACCCTAAAGCCATCACCTGTTGTATGCCACGGTA
CTAAAGCTCATATGAAGTCAAACGAGTACCAGTACAAAGCCAGCAGAGTC
TTCGAAGCACCCAAAACCCACTAACAAACAGGTATGACTAGTCGCTCTGT
AATCTGTTTTTCGCTCCTCATACTTGCTCTCTGGTCTCCAAGCGGCGCTG
CACATCATTGTGCCACACCCTCACCGAGTGTCGGTGCCAAGCAATCACCT
TCACCGAGTCCTACGTCGTCGCCACCACCGTGGCACAAGGATCGATATTT
TTTCTTCTCGAACACAGCTCCCATCACCAGCACGCTGAAAGCAGTGGATG
GCTTTCCAGACAAGGTTAGCAGAACGCTGGATAAGCTGCGTCAAACAGAG
GACGCAATTCTGAAGGCGCAACGAGACAAAATACAAACGCTTACCAAGTC
TCGTTTGCGAGGACAACGAACTCGCCATGCACTTCAATCGTTGCTACCGA
CATGCAACTCGGAGGATACTGCTTGGTTCTCCGCAGCGAAGTCAATGATT
GAAGCCGTGTTCAATCGAACCACCTGGATCCCGTGCGTGACGGACGTGTT
TCCTGAAGGCGAAGAAGAGCTTGAGTGGTATGATGTGATCTCTCAATTCC
GACAGGCACTTAATGACAGTGCTGCTTTGATCAATGAACAGGCTGAAGCT
AGATTTGCCAATCCGGATACTGTCTATAACTTTCCACACGAAACGGGTAC
GGAAAGATGTTTAATAAATGCTATCGGTGCGTTTCGGGTGGATGACTCTT
GGTTTGTCAATGTCGCAATCACCAATGAATTGAAGTCACACCATTTAGGG
GATCGTAAGCGATATTTTCTGGTGGAACTTATGGGCAGGGATGGCACGCA
CGCAAATATGACTTTGGGTGTCATTCCTCCTGCTCCTAGCCCTGATCCGG
CTGCTTATTACAGACGTTCTGATGCCAGCACTCTCAGCGTCGATCATATC
GGCCCTGCCTCACCGGATTTCTTCAAACCTACGTTGTTTGAAAACAACAT
CGCGCTGGCGAGGGCGCTTGAAAAGTCTCAGTTGTACATGCAACAGGCTC
ACGAAGCGAGAAGTGCGTCAAGCATTGCGATTCTATTTCTGCCACTCTTT
CTTAACATTCTTCCAATTGCTCTGTTTGCCGATGTGAGCAGACTAATCAT
GTTGTTTTATGCTTTGTTAAGCGATGTGCTAACGACATTGCCACTGGCAA
TCAAAGGAATTGAACTGATACTGACCGGGTCAGAAAGAAATGTGGGCGTT
GTAGTTCGAATGACTTCCTTTCACGACGGTACGAGAATGAATGAGAGCGC
GGCGGAAGTTTACGTAGCGTCATGCCAGCCATCGAAGGGTGTTGTGAACG
CTGGCATTACCTTCCTGGTGATTGCGATGGTTTTCTTAGTGGTTGGGCTT
GTTTTAGAAGTGGTGGCCAGACAACGTGTGCAGGGATGGAGAAGAAAGTT
AATGTGA
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Coding sequence (CDS) from alignment at tig00000850_pilon:889381..894087+

>Ggra3663.t1 ID=Ggra3663.t1|Name=Ggra3663.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1203bp|location=Sequence derived from alignment at tig00000850_pilon:889381..894087+ (Gracilaria gracilis GNS1m male)
ttgaaaaacatgcCTCCCATCACCAGCACGCTGAAAGCAGTGGATGGCTT
TCCAGACAAGGTTAGCAGAACGCTGGATAAGCTGCGTCAAACAGAGGACG
CAATTCTGAAGGCGCAACGAGACAAAATACAAACGCTTACCAAGTCTCGT
TTGCGAGGACAACGAACTCGCCATGCACTTCAATCGTTGCTACCGACATG
CAACTCGGAGGATACTGCTTGGTTCTCCGCAGCGAAGTCAATGATTGAAG
CCGTGTTCAATCGAACCACCTGGATCCCGTGCGTGACGGACGTGTTTCCT
GAAGGCGAAGAAGAGCTTGAGTGGTATGATGTGATCTCTCAATTCCGACA
GGCACTTAATGACAGTGCTGCTTTGATCAATGAACAGGCTGAAGCTAGAT
TTGCCAATCCGGATACTGTCTATAACTTTCCACACGAAACGGGTACGGAA
AGATGTTTAATAAATGCTATCGGTGCGTTTCGGGTGGATGACTCTTGGTT
TGTCAATGTCGCAATCACCAATGAATTGAAGTCACACCATTTAGGGGATC
GTAAGCGATATTTTCTGGTGGAACTTATGGGCAGGGATGGCACGCACGCA
AATATGACTTTGGGTGTCATTCCTCCTGCTCCTAGCCCTGATCCGGCTGC
TTATTACAGACGTTCTGATGCCAGCACTCTCAGCGTCGATCATATCGGCC
CTGCCTCACCGGATTTCTTCAAACCTACGTTGTTTGAAAACAACATCGCG
CTGGCGAGGGCGCTTGAAAAGTCTCAGTTGTACATGCAACAGGCTCACGA
AGCGAGAAGTGCGTCAAGCATTGCGATTCTATTTCTGCCACTCTTTCTTA
ACATTCTTCCAATTGCTCTGTTTGCCGATGTGAGCAGACTAATCATGTTG
TTTTATGCTTTGTTAAGCGATGTGCTAACGACATTGCCACTGGCAATCAA
AGGAATTGAACTGATACTGACCGGGTCAGAAAGAAATGTGGGCGTTGTAG
TTCGAATGACTTCCTTTCACGACGGTACGAGAATGAATGAGAGCGCGGCG
GAAGTTTACGTAGCGTCATGCCAGCCATCGAAGGGTGTTGTGAACGCTGG
CATTACCTTCCTGGTGATTGCGATGGTTTTCTTAGTGGTTGGGCTTGTTT
TAGAAGTGGTGGCCAGACAACGTGTGCAGGGATGGAGAAGAAAGTTAATG
TGA
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