Ggra3660.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3660.t1
Unique NameGgra3660.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length200
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:884186..884785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3711.Bra027452.1-P
PFAMsPGI
Max annot lvl35493|Streptophyta
KEGG rclassRC00376,RC00563
KEGG koko:K01810
KEGG ReactionR02739,R02740,R03321
KEGG Pathwayko00010,ko00030,ko00500,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00500,map00520,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00001,M00004,M00114
GOsGO:0002376,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0009605,GO:0009607,GO:0009620,GO:0009814,GO:0009817,GO:0010035,GO:0010038,GO:0042221,GO:0043207,GO:0044424,GO:0044444,GO:0044464,GO:0045087,GO:0046686,GO:0050832,GO:0050896,GO:0051704,GO:0051707,GO:0098542
Evalue1.37e-91
EggNOG OGsCOG0166@1|root,KOG2446@2759|Eukaryota,37IKD@33090|Viridiplantae,3GE64@35493|Streptophyta,3HR5N@3699|Brassicales
EC5.3.1.9
DescriptionBelongs to the GPI family
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3660Ggra3660Gracilaria gracilis GNS1m malegenetig00000850_pilon 875374..884785 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3660.t1.start1Ggra3660.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 884186..884188 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3660.t1.CDS1Ggra3660.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 884186..884785 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3660.t1.exon1Ggra3660.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 884186..884785 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3660.t1.stop1Ggra3660.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 884783..884785 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3660.t1Ggra3660.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 884186..884785 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3660.t1 ID=Ggra3660.t1|Name=Ggra3660.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=200bp
MESNGKRVKLDGSALSVPAGPINFGEPGTNGQHSFYQLIHQGRVVPCDFV
GVIKSQAPISLEGEVVCNHDELMSNFFAQADALAFGKSAEQCRLEGVPEE
LVPHKTFPGNRPSSSMLMDELSAFTTGQLLALFEHRTAVEGFIWGINSFD
QWGVELGKVLAKGVRKQLQMSRNGAEVNGFNPSTTALLKKFLAGSVSSE*
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spliced messenger RNA

>Ggra3660.t1 ID=Ggra3660.t1|Name=Ggra3660.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=600bp|location=Sequence derived from alignment at tig00000850_pilon:884186..884785+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atggagagcaacggcaagcGAGTGAAGTTGGACGGCTCGGCGCTGTCCGT
GCCGGCTGGGCCCATCAACTTTGGCGAGCCGGGCACCAACGGGCAGCACT
CGTTCTACCAGCTGATCCATCAGGGGCGCGTGGTGCCGTGCGACTTTGTG
GGGGTGATCAAGTCGCAGGCGCCCATCTCGTTGGAGGGCGAAGTGGTGTG
CAACCACGACGAACTGATGAGCAACTTTTTCGCGCAGGCGGATGCGTTGG
CATTTGGCAAGTCGGCCGAGCAGTGCCGGCTGGAGGGCGTGCCGGAGGAA
CTGGTGCCGCACAAGACGTTCCCGGGCAACCGACCGAGCTCGAGCATGCT
GATGGATGAGCTGAGCGCGTTCACGACCGGGCAGCTGCTGGCGCTGTTTG
AGCACCGCACGGCCGTGGAGGGCTTCATCTGGGGCATCAACTCGTTCGAC
CAGTGGGGCGTGGAGCTGGGCAAGGTGCTGGCAAAGGGGGTGAGGAAACA
GCTGCAAATGTCGCGGAACGGCGCCGAGGTGAATGGGTTCAACCCGTCGA
CTACTGCGCTACTGAAAAAGTTCTTGGCGGGATCGGTATCCTCCGAGTAG
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protein sequence of Ggra3660.t1

>Ggra3660.t1 ID=Ggra3660.t1|Name=Ggra3660.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=200bp
MESNGKRVKLDGSALSVPAGPINFGEPGTNGQHSFYQLIHQGRVVPCDFV
GVIKSQAPISLEGEVVCNHDELMSNFFAQADALAFGKSAEQCRLEGVPEE
LVPHKTFPGNRPSSSMLMDELSAFTTGQLLALFEHRTAVEGFIWGINSFD
QWGVELGKVLAKGVRKQLQMSRNGAEVNGFNPSTTALLKKFLAGSVSSE*
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mRNA from alignment at tig00000850_pilon:884186..884785+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3660.t1 ID=Ggra3660.t1|Name=Ggra3660.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=600bp|location=Sequence derived from alignment at tig00000850_pilon:884186..884785+ (Gracilaria gracilis GNS1m male)
atggagagcaacggcaagcGAGTGAAGTTGGACGGCTCGGCGCTGTCCGT
GCCGGCTGGGCCCATCAACTTTGGCGAGCCGGGCACCAACGGGCAGCACT
CGTTCTACCAGCTGATCCATCAGGGGCGCGTGGTGCCGTGCGACTTTGTG
GGGGTGATCAAGTCGCAGGCGCCCATCTCGTTGGAGGGCGAAGTGGTGTG
CAACCACGACGAACTGATGAGCAACTTTTTCGCGCAGGCGGATGCGTTGG
CATTTGGCAAGTCGGCCGAGCAGTGCCGGCTGGAGGGCGTGCCGGAGGAA
CTGGTGCCGCACAAGACGTTCCCGGGCAACCGACCGAGCTCGAGCATGCT
GATGGATGAGCTGAGCGCGTTCACGACCGGGCAGCTGCTGGCGCTGTTTG
AGCACCGCACGGCCGTGGAGGGCTTCATCTGGGGCATCAACTCGTTCGAC
CAGTGGGGCGTGGAGCTGGGCAAGGTGCTGGCAAAGGGGGTGAGGAAACA
GCTGCAAATGTCGCGGAACGGCGCCGAGGTGAATGGGTTCAACCCGTCGA
CTACTGCGCTACTGAAAAAGTTCTTGGCGGGATCGGTATCCTCCGAGTAG
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Coding sequence (CDS) from alignment at tig00000850_pilon:884186..884785+

>Ggra3660.t1 ID=Ggra3660.t1|Name=Ggra3660.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=600bp|location=Sequence derived from alignment at tig00000850_pilon:884186..884785+ (Gracilaria gracilis GNS1m male)
atggagagcaacggcaagcGAGTGAAGTTGGACGGCTCGGCGCTGTCCGT
GCCGGCTGGGCCCATCAACTTTGGCGAGCCGGGCACCAACGGGCAGCACT
CGTTCTACCAGCTGATCCATCAGGGGCGCGTGGTGCCGTGCGACTTTGTG
GGGGTGATCAAGTCGCAGGCGCCCATCTCGTTGGAGGGCGAAGTGGTGTG
CAACCACGACGAACTGATGAGCAACTTTTTCGCGCAGGCGGATGCGTTGG
CATTTGGCAAGTCGGCCGAGCAGTGCCGGCTGGAGGGCGTGCCGGAGGAA
CTGGTGCCGCACAAGACGTTCCCGGGCAACCGACCGAGCTCGAGCATGCT
GATGGATGAGCTGAGCGCGTTCACGACCGGGCAGCTGCTGGCGCTGTTTG
AGCACCGCACGGCCGTGGAGGGCTTCATCTGGGGCATCAACTCGTTCGAC
CAGTGGGGCGTGGAGCTGGGCAAGGTGCTGGCAAAGGGGGTGAGGAAACA
GCTGCAAATGTCGCGGAACGGCGCCGAGGTGAATGGGTTCAACCCGTCGA
CTACTGCGCTACTGAAAAAGTTCTTGGCGGGATCGGTATCCTCCGAGTAG
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