Ggra3658.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3658.t1
Unique Name	Ggra3658.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	484

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000850_pilon	contig	tig00000850_pilon:870567..872018 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3658	Ggra3658	Gracilaria gracilis GNS1m male	gene	tig00000850_pilon 870567..872018 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3658.t1.start1	Ggra3658.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000850_pilon 870567..870569 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3658.t1.CDS1	Ggra3658.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000850_pilon 870567..872018 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3658.t1.exon1	Ggra3658.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000850_pilon 870567..872018 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3658.t1.stop1	Ggra3658.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000850_pilon 872016..872018 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3658.t1	Ggra3658.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000850_pilon 870567..872018 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000850_pilon:870567..872018+
coding sequence from alignment at tig00000850_pilon:870567..872018+

mRNA sequence

>Ggra3658.t1 ID=Ggra3658.t1|Name=Ggra3658.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=484bp
MCRNSKSYSNPIVSRSAQPPTLSLFLLILLFHTSWALPAKIRPPPNSNLS
VSLPPWAQGRLFAISDDAPFARHLRQDPDYVQALGVLTDFFASVQEQINV
GRRNSSSIGYGKPCNVRPESWHRATHSAASNRGWTVSKVNGSMCVTDYYG
VPPTFPLCLEQVQETLGGFTAVSRHANRIMLDTVGNWTITGENKGQPLEF
PSQICELSNYGGFRLRGKWWAGIGLSNQPDDFHVPDGKRVSIGEVHRIEN
GTIVPALMTLPINPGIGEEHKVTDRATTLLTIWGGAINSFSRFEPSTAHE
NVGLKAALEKGANFAQQMEGVILASNIAILGLPLVLNLVPVSLISSCEKW
RKVIYILLSDILTALPMFIKGIELYSIGNAKFTEIVTRMGDTFEVGTVGV
EMWIASCRVSQGAQTIGTVFITVASLAMVLGVLLEVIASSLVSRARKRKQ
LAMEEMQVLEQFEGTGWKYYDEFCQSQAGWKTI*

spliced messenger RNA

>Ggra3658.t1 ID=Ggra3658.t1|Name=Ggra3658.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1452bp|location=Sequence derived from alignment at tig00000850_pilon:870567..872018+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTCGAAATTCCAAATCGTACTCTAACCCCATTGTTTCACGTTCTGC
CCAACCTCCAACTTTGTCTCTCTTTCTACTCATTCTTCTGTTCCATACAT
CGTGGGCACTACCGGCTAAGATTCGTCCGCCACCTAACAGCAACCTCTCA
GTGAGTCTTCCTCCATGGGCTCAGGGTCGTCTTTTTGCTATTTCCGACGA
TGCGCCGTTTGCCCGTCACTTGCGACAAGACCCTGACTATGTACAGGCTC
TTGGCGTCCTCACCGACTTCTTTGCCTCAGTTCAAGAACAAATCAATGTT
GGCCGTCGGAATAGTAGTTCTATCGGATATGGTAAACCGTGTAATGTTCG
ACCTGAGTCGTGGCACAGAGCGACACATAGTGCTGCTTCGAATCGGGGCT
GGACCGTTTCAAAAGTTAATGGGTCTATGTGTGTTACCGATTATTACGGC
GTTCCACCTACGTTCCCACTCTGTCTCGAGCAAGTGCAGGAAACTCTCGG
AGGATTTACAGCTGTGAGTAGACATGCAAATCGCATCATGCTCGACACAG
TAGGAAACTGGACAATTACCGGAGAAAACAAGGGACAACCGTTAGAGTTT
CCATCACAGATATGTGAGCTGAGTAACTATGGTGGTTTTCGCTTACGGGG
AAAATGGTGGGCTGGTATTGGTCTGTCTAACCAGCCAGACGATTTCCATG
TTCCGGATGGTAAGCGCGTGTCAATCGGCGAAGTGCATCGAATTGAAAAT
GGAACGATTGTCCCTGCGTTAATGACACTGCCAATTAACCCTGGGATTGG
GGAAGAGCATAAGGTGACTGACCGCGCTACGACTCTCTTGACCATATGGG
GTGGAGCAATCAATTCTTTCTCTCGTTTCGAACCCTCTACTGCTCACGAG
AACGTGGGCTTAAAGGCGGCGCTGGAAAAGGGGGCCAATTTCGCGCAACA
AATGGAAGGTGTGATACTCGCTTCTAACATTGCCATACTTGGATTACCAC
TAGTGCTGAACTTGGTGCCAGTTTCGCTGATATCCTCATGTGAAAAGTGG
AGAAAAGTGATATACATATTGCTAAGCGATATACTAACAGCGTTGCCCAT
GTTCATAAAAGGAATTGAACTTTATAGCATTGGGAACGCTAAGTTCACGG
AGATCGTAACTCGAATGGGCGACACGTTTGAGGTGGGCACAGTTGGCGTG
GAGATGTGGATTGCCTCTTGCCGGGTGAGTCAAGGCGCCCAAACAATTGG
CACGGTATTCATCACTGTAGCTTCCCTGGCTATGGTTTTAGGGGTGTTGC
TAGAAGTGATTGCCAGTTCATTGGTGTCACGAGCGAGAAAAAGAAAGCAG
CTCGCAATGGAAGAGATGCAGGTACTCGAACAATTCGAAGGAACTGGTTG
GAAGTACTACGACGAATTTTGTCAGTCTCAGGCTGGGTGGAAAACGATAT
AG

protein sequence of Ggra3658.t1

>Ggra3658.t1 ID=Ggra3658.t1|Name=Ggra3658.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=484bp
MCRNSKSYSNPIVSRSAQPPTLSLFLLILLFHTSWALPAKIRPPPNSNLS
VSLPPWAQGRLFAISDDAPFARHLRQDPDYVQALGVLTDFFASVQEQINV
GRRNSSSIGYGKPCNVRPESWHRATHSAASNRGWTVSKVNGSMCVTDYYG
VPPTFPLCLEQVQETLGGFTAVSRHANRIMLDTVGNWTITGENKGQPLEF
PSQICELSNYGGFRLRGKWWAGIGLSNQPDDFHVPDGKRVSIGEVHRIEN
GTIVPALMTLPINPGIGEEHKVTDRATTLLTIWGGAINSFSRFEPSTAHE
NVGLKAALEKGANFAQQMEGVILASNIAILGLPLVLNLVPVSLISSCEKW
RKVIYILLSDILTALPMFIKGIELYSIGNAKFTEIVTRMGDTFEVGTVGV
EMWIASCRVSQGAQTIGTVFITVASLAMVLGVLLEVIASSLVSRARKRKQ
LAMEEMQVLEQFEGTGWKYYDEFCQSQAGWKTI*

mRNA from alignment at tig00000850_pilon:870567..872018+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3658.t1 ID=Ggra3658.t1|Name=Ggra3658.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1452bp|location=Sequence derived from alignment at tig00000850_pilon:870567..872018+ (Gracilaria gracilis GNS1m male)
ATGTGTCGAAATTCCAAATCGTACTCTAACCCCATTGTTTCACGTTCTGC
CCAACCTCCAACTTTGTCTCTCTTTCTACTCATTCTTCTGTTCCATACAT
CGTGGGCACTACCGGCTAAGATTCGTCCGCCACCTAACAGCAACCTCTCA
GTGAGTCTTCCTCCATGGGCTCAGGGTCGTCTTTTTGCTATTTCCGACGA
TGCGCCGTTTGCCCGTCACTTGCGACAAGACCCTGACTATGTACAGGCTC
TTGGCGTCCTCACCGACTTCTTTGCCTCAGTTCAAGAACAAATCAATGTT
GGCCGTCGGAATAGTAGTTCTATCGGATATGGTAAACCGTGTAATGTTCG
ACCTGAGTCGTGGCACAGAGCGACACATAGTGCTGCTTCGAATCGGGGCT
GGACCGTTTCAAAAGTTAATGGGTCTATGTGTGTTACCGATTATTACGGC
GTTCCACCTACGTTCCCACTCTGTCTCGAGCAAGTGCAGGAAACTCTCGG
AGGATTTACAGCTGTGAGTAGACATGCAAATCGCATCATGCTCGACACAG
TAGGAAACTGGACAATTACCGGAGAAAACAAGGGACAACCGTTAGAGTTT
CCATCACAGATATGTGAGCTGAGTAACTATGGTGGTTTTCGCTTACGGGG
AAAATGGTGGGCTGGTATTGGTCTGTCTAACCAGCCAGACGATTTCCATG
TTCCGGATGGTAAGCGCGTGTCAATCGGCGAAGTGCATCGAATTGAAAAT
GGAACGATTGTCCCTGCGTTAATGACACTGCCAATTAACCCTGGGATTGG
GGAAGAGCATAAGGTGACTGACCGCGCTACGACTCTCTTGACCATATGGG
GTGGAGCAATCAATTCTTTCTCTCGTTTCGAACCCTCTACTGCTCACGAG
AACGTGGGCTTAAAGGCGGCGCTGGAAAAGGGGGCCAATTTCGCGCAACA
AATGGAAGGTGTGATACTCGCTTCTAACATTGCCATACTTGGATTACCAC
TAGTGCTGAACTTGGTGCCAGTTTCGCTGATATCCTCATGTGAAAAGTGG
AGAAAAGTGATATACATATTGCTAAGCGATATACTAACAGCGTTGCCCAT
GTTCATAAAAGGAATTGAACTTTATAGCATTGGGAACGCTAAGTTCACGG
AGATCGTAACTCGAATGGGCGACACGTTTGAGGTGGGCACAGTTGGCGTG
GAGATGTGGATTGCCTCTTGCCGGGTGAGTCAAGGCGCCCAAACAATTGG
CACGGTATTCATCACTGTAGCTTCCCTGGCTATGGTTTTAGGGGTGTTGC
TAGAAGTGATTGCCAGTTCATTGGTGTCACGAGCGAGAAAAAGAAAGCAG
CTCGCAATGGAAGAGATGCAGGTACTCGAACAATTCGAAGGAACTGGTTG
GAAGTACTACGACGAATTTTGTCAGTCTCAGGCTGGGTGGAAAACGATAT
AG

Coding sequence (CDS) from alignment at tig00000850_pilon:870567..872018+

>Ggra3658.t1 ID=Ggra3658.t1|Name=Ggra3658.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1452bp|location=Sequence derived from alignment at tig00000850_pilon:870567..872018+ (Gracilaria gracilis GNS1m male)
ATGTGTCGAAATTCCAAATCGTACTCTAACCCCATTGTTTCACGTTCTGC
CCAACCTCCAACTTTGTCTCTCTTTCTACTCATTCTTCTGTTCCATACAT
CGTGGGCACTACCGGCTAAGATTCGTCCGCCACCTAACAGCAACCTCTCA
GTGAGTCTTCCTCCATGGGCTCAGGGTCGTCTTTTTGCTATTTCCGACGA
TGCGCCGTTTGCCCGTCACTTGCGACAAGACCCTGACTATGTACAGGCTC
TTGGCGTCCTCACCGACTTCTTTGCCTCAGTTCAAGAACAAATCAATGTT
GGCCGTCGGAATAGTAGTTCTATCGGATATGGTAAACCGTGTAATGTTCG
ACCTGAGTCGTGGCACAGAGCGACACATAGTGCTGCTTCGAATCGGGGCT
GGACCGTTTCAAAAGTTAATGGGTCTATGTGTGTTACCGATTATTACGGC
GTTCCACCTACGTTCCCACTCTGTCTCGAGCAAGTGCAGGAAACTCTCGG
AGGATTTACAGCTGTGAGTAGACATGCAAATCGCATCATGCTCGACACAG
TAGGAAACTGGACAATTACCGGAGAAAACAAGGGACAACCGTTAGAGTTT
CCATCACAGATATGTGAGCTGAGTAACTATGGTGGTTTTCGCTTACGGGG
AAAATGGTGGGCTGGTATTGGTCTGTCTAACCAGCCAGACGATTTCCATG
TTCCGGATGGTAAGCGCGTGTCAATCGGCGAAGTGCATCGAATTGAAAAT
GGAACGATTGTCCCTGCGTTAATGACACTGCCAATTAACCCTGGGATTGG
GGAAGAGCATAAGGTGACTGACCGCGCTACGACTCTCTTGACCATATGGG
GTGGAGCAATCAATTCTTTCTCTCGTTTCGAACCCTCTACTGCTCACGAG
AACGTGGGCTTAAAGGCGGCGCTGGAAAAGGGGGCCAATTTCGCGCAACA
AATGGAAGGTGTGATACTCGCTTCTAACATTGCCATACTTGGATTACCAC
TAGTGCTGAACTTGGTGCCAGTTTCGCTGATATCCTCATGTGAAAAGTGG
AGAAAAGTGATATACATATTGCTAAGCGATATACTAACAGCGTTGCCCAT
GTTCATAAAAGGAATTGAACTTTATAGCATTGGGAACGCTAAGTTCACGG
AGATCGTAACTCGAATGGGCGACACGTTTGAGGTGGGCACAGTTGGCGTG
GAGATGTGGATTGCCTCTTGCCGGGTGAGTCAAGGCGCCCAAACAATTGG
CACGGTATTCATCACTGTAGCTTCCCTGGCTATGGTTTTAGGGGTGTTGC
TAGAAGTGATTGCCAGTTCATTGGTGTCACGAGCGAGAAAAAGAAAGCAG
CTCGCAATGGAAGAGATGCAGGTACTCGAACAATTCGAAGGAACTGGTTG
GAAGTACTACGACGAATTTTGTCAGTCTCAGGCTGGGTGGAAAACGATAT
AG