Ggra3654.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3654.t1
Unique Name	Ggra3654.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	564

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000850_pilon	contig	tig00000850_pilon:746722..748674 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3654	Ggra3654	Gracilaria gracilis GNS1m male	gene	tig00000850_pilon 746722..748674 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3654.t1	Ggra3654.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000850_pilon 746722..748674 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3654.t1.start1	Ggra3654.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000850_pilon 746722..746724 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3654.t1.CDS1	Ggra3654.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000850_pilon 746722..748403 +
Ggra3654.t1.CDS2	Ggra3654.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000850_pilon 748665..748674 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3654.t1.exon1	Ggra3654.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000850_pilon 746722..748403 +
Ggra3654.t1.exon2	Ggra3654.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000850_pilon 748665..748674 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3654.t1.intron1	Ggra3654.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000850_pilon 748404..748664 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3654.t1.stop1	Ggra3654.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000850_pilon 748672..748674 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000850_pilon:746722..748674+
coding sequence from alignment at tig00000850_pilon:746722..748674+

mRNA sequence

>Ggra3654.t1 ID=Ggra3654.t1|Name=Ggra3654.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=564bp
MRALSFAPFLTLLLSLSLLPRVAARADVVRSDCCFPPGLTFDTCHSTQRP
CAPGRACLTDDSLYPCSQSRSCICYPQRIHACSSAAQCAVGESCAARPYD
HFPFCVSDVVVSLDPSFVIISSCCDSSFPIQPPLTTSQPPRPTDDQLPVV
TGPKPTAQPTAPPAVTGSKPTAQPTVPPTAQPTVPPTAPPTVTDPKPTAQ
PTAPPAKPPAPSPKPSEALRPTPTRDVVVVSKPRASPTPSRSRLPRVSAS
PRPTPSPHPKITAVQPADRPKPSPTSAPSGGGRPQRTRPPKPSGGLAGDS
CRRRGECISYRKCVDRSTKRDCGGGDCVCVGSRLCVCNDQCTDGEVCSGS
PGRAYCFSPRLIEILPYANALPCPITKPTPTATPTKPPGPSTTGLTGESC
RIDKNCEGERRCVAARSRKCVTSGVLCDGRQQACTVGDRVCYCFKLRECN
CSLDCDDDEVCTSTLFGRICLSSVLTEKDTILQTIGCPSAGSGATSDDPI
LIVNLVAPENSDGEQDDSSSGSGSGADQQDAEDEVCVDAQALSHLQPHEL
VYRTHRTAYVLVG*

spliced messenger RNA

>Ggra3654.t1 ID=Ggra3654.t1|Name=Ggra3654.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1692bp|location=Sequence derived from alignment at tig00000850_pilon:746722..748674+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGCCCTTTCATTCGCCCCGTTCCTCACTCTGCTGCTCTCCCTCTC
GCTGCTGCCGCGCGTCGCCGCGCGTGCCGACGTCGTCCGCTCCGACTGCT
GCTTCCCGCCAGGCCTCACCTTCGACACCTGCCACAGCACGCAGCGCCCC
TGCGCACCGGGCCGCGCCTGCCTCACCGACGACTCGCTCTACCCGTGCTC
GCAGTCGCGCTCGTGCATCTGCTACCCGCAACGCATCCACGCGTGCTCCT
CCGCCGCCCAATGCGCCGTGGGCGAGAGCTGCGCCGCGCGCCCGTACGAC
CACTTCCCGTTCTGCGTCAGCGACGTCGTCGTGTCACTCGACCCCTCCTT
CGTCATCATCAGCTCGTGTTGTGATTCCTCCTTCCCCATACAACCGCCAC
TGACAACTTCCCAACCGCCGCGCCCGACCGACGACCAGCTGCCCGTCGTC
ACCGGCCCCAAGCCCACCGCGCAGCCCACCGCGCCGCCCGCCGTCACCGG
CTCCAAGCCCACCGCGCAGCCCACCGTGCCGCCCACCGCGCAGCCCACCG
TGCCGCCCACCGCGCCGCCCACAGTCACCGACCCCAAGCCCACCGCGCAG
CCCACCGCGCCGCCCGCAAAGCCGCCCGCGCCGTCCCCAAAGCCCAGCGA
GGCGCTGCGTCCCACGCCCACGCGCGACGTCGTCGTCGTGTCCAAGCCGC
GCGCGTCGCCCACGCCCTCGCGCTCCAGGCTGCCGCGCGTGTCCGCGTCG
CCGCGCCCCACGCCGTCGCCGCACCCGAAGATCACCGCCGTGCAGCCGGC
CGATCGACCAAAGCCCTCGCCCACCAGCGCGCCCAGTGGCGGCGGTCGTC
CGCAGCGCACGCGCCCGCCAAAGCCCAGCGGCGGGCTGGCGGGAGATTCG
TGTCGGAGGCGTGGCGAGTGCATTAGTTATCGAAAATGCGTCGATCGCAG
TACCAAGCGCGACTGCGGTGGCGGCGATTGTGTGTGTGTTGGATCGCGCC
TTTGCGTTTGTAATGACCAGTGTACGGACGGTGAGGTGTGCTCGGGGTCG
CCTGGTAGGGCGTACTGTTTCTCGCCGAGGTTGATTGAGATTTTGCCGTA
TGCAAATGCCTTGCCGTGTCCGATAACCAAAccgacgcccacggcgacgc
ctaccaagccgccggggccgaGTACCACGGGACTCACGGGCGAGTCTTGT
CGCATCGACAAGAACTGCGAGGGCGAGCGCAGGTGCGTTGCGGCGCGCAG
TCGCAAGTGCGTCACTTCGGGCGTGCTTTGCGATGGGCGACAGCAGGCGT
GCACCGTGGGAGATAGGGTATGTTATTGTTTCAAGCTTCGGGAATGTAAT
TGCTCGCTTGATTGCGATGATGATGAGGTTTGTACTTCCACATTGTTTGG
GCGAATCTGTCTGTCGTCCGTTCTTACCGAGAAGGATACCATTCTGCAGA
CAATTGGTTGTCCGTCTGCCGGCTCGGGAGCCACTTCTGATGACCCCATT
TTGATTGTCAATCTCGTCGCTCCCGAGAATTCGGATGGGGAGCAAGACGA
TTCATCCTCGGGATCGGGATCTGGTGCGGATCAACAAGATGCGGAGGATG
AAGTGTGCGTTGATGCTCAAGCCCTCAGTCATCTTCAGCCGCACGAGCTC
GTGTACAGGACCCACAGAACCGCTTAcgtactAGTGGGGTAA

protein sequence of Ggra3654.t1

>Ggra3654.t1 ID=Ggra3654.t1|Name=Ggra3654.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=564bp
MRALSFAPFLTLLLSLSLLPRVAARADVVRSDCCFPPGLTFDTCHSTQRP
CAPGRACLTDDSLYPCSQSRSCICYPQRIHACSSAAQCAVGESCAARPYD
HFPFCVSDVVVSLDPSFVIISSCCDSSFPIQPPLTTSQPPRPTDDQLPVV
TGPKPTAQPTAPPAVTGSKPTAQPTVPPTAQPTVPPTAPPTVTDPKPTAQ
PTAPPAKPPAPSPKPSEALRPTPTRDVVVVSKPRASPTPSRSRLPRVSAS
PRPTPSPHPKITAVQPADRPKPSPTSAPSGGGRPQRTRPPKPSGGLAGDS
CRRRGECISYRKCVDRSTKRDCGGGDCVCVGSRLCVCNDQCTDGEVCSGS
PGRAYCFSPRLIEILPYANALPCPITKPTPTATPTKPPGPSTTGLTGESC
RIDKNCEGERRCVAARSRKCVTSGVLCDGRQQACTVGDRVCYCFKLRECN
CSLDCDDDEVCTSTLFGRICLSSVLTEKDTILQTIGCPSAGSGATSDDPI
LIVNLVAPENSDGEQDDSSSGSGSGADQQDAEDEVCVDAQALSHLQPHEL
VYRTHRTAYVLVG*

mRNA from alignment at tig00000850_pilon:746722..748674+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3654.t1 ID=Ggra3654.t1|Name=Ggra3654.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1953bp|location=Sequence derived from alignment at tig00000850_pilon:746722..748674+ (Gracilaria gracilis GNS1m male)
ATGCGCGCCCTTTCATTCGCCCCGTTCCTCACTCTGCTGCTCTCCCTCTC
GCTGCTGCCGCGCGTCGCCGCGCGTGCCGACGTCGTCCGCTCCGACTGCT
GCTTCCCGCCAGGCCTCACCTTCGACACCTGCCACAGCACGCAGCGCCCC
TGCGCACCGGGCCGCGCCTGCCTCACCGACGACTCGCTCTACCCGTGCTC
GCAGTCGCGCTCGTGCATCTGCTACCCGCAACGCATCCACGCGTGCTCCT
CCGCCGCCCAATGCGCCGTGGGCGAGAGCTGCGCCGCGCGCCCGTACGAC
CACTTCCCGTTCTGCGTCAGCGACGTCGTCGTGTCACTCGACCCCTCCTT
CGTCATCATCAGCTCGTGTTGTGATTCCTCCTTCCCCATACAACCGCCAC
TGACAACTTCCCAACCGCCGCGCCCGACCGACGACCAGCTGCCCGTCGTC
ACCGGCCCCAAGCCCACCGCGCAGCCCACCGCGCCGCCCGCCGTCACCGG
CTCCAAGCCCACCGCGCAGCCCACCGTGCCGCCCACCGCGCAGCCCACCG
TGCCGCCCACCGCGCCGCCCACAGTCACCGACCCCAAGCCCACCGCGCAG
CCCACCGCGCCGCCCGCAAAGCCGCCCGCGCCGTCCCCAAAGCCCAGCGA
GGCGCTGCGTCCCACGCCCACGCGCGACGTCGTCGTCGTGTCCAAGCCGC
GCGCGTCGCCCACGCCCTCGCGCTCCAGGCTGCCGCGCGTGTCCGCGTCG
CCGCGCCCCACGCCGTCGCCGCACCCGAAGATCACCGCCGTGCAGCCGGC
CGATCGACCAAAGCCCTCGCCCACCAGCGCGCCCAGTGGCGGCGGTCGTC
CGCAGCGCACGCGCCCGCCAAAGCCCAGCGGCGGGCTGGCGGGAGATTCG
TGTCGGAGGCGTGGCGAGTGCATTAGTTATCGAAAATGCGTCGATCGCAG
TACCAAGCGCGACTGCGGTGGCGGCGATTGTGTGTGTGTTGGATCGCGCC
TTTGCGTTTGTAATGACCAGTGTACGGACGGTGAGGTGTGCTCGGGGTCG
CCTGGTAGGGCGTACTGTTTCTCGCCGAGGTTGATTGAGATTTTGCCGTA
TGCAAATGCCTTGCCGTGTCCGATAACCAAAccgacgcccacggcgacgc
ctaccaagccgccggggccgaGTACCACGGGACTCACGGGCGAGTCTTGT
CGCATCGACAAGAACTGCGAGGGCGAGCGCAGGTGCGTTGCGGCGCGCAG
TCGCAAGTGCGTCACTTCGGGCGTGCTTTGCGATGGGCGACAGCAGGCGT
GCACCGTGGGAGATAGGGTATGTTATTGTTTCAAGCTTCGGGAATGTAAT
TGCTCGCTTGATTGCGATGATGATGAGGTTTGTACTTCCACATTGTTTGG
GCGAATCTGTCTGTCGTCCGTTCTTACCGAGAAGGATACCATTCTGCAGA
CAATTGGTTGTCCGTCTGCCGGCTCGGGAGCCACTTCTGATGACCCCATT
TTGATTGTCAATCTCGTCGCTCCCGAGAATTCGGATGGGGAGCAAGACGA
TTCATCCTCGGGATCGGGATCTGGTGCGGATCAACAAGATGCGGAGGATG
AAGTGTGCGTTGATGCTCAAGCCCTCAGTCATCTTCAGCCGCACGAGCTC
GTGTACAGGACCCACAGAACCGCTTAcgtactgtgcgatgcgcagcaaag
ttgcgctacgccgggccatgtggtgctcttcaacggacgtgcgatgatga
tgaagtcgtattgcgcgctcgtgccttgtgaaaatagaattatgcaagtc
aacagtcctcggcttaagcccaacattcgaatcccatcaagaacggatgg
tctgcatttcacagcgtttgccgctaggtatcaaactagaatggaggaac
tggccctcactactattgtacacgttggcttgtgatgTAGTAGAGTGGGG
TAA

Coding sequence (CDS) from alignment at tig00000850_pilon:746722..748674+

>Ggra3654.t1 ID=Ggra3654.t1|Name=Ggra3654.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1692bp|location=Sequence derived from alignment at tig00000850_pilon:746722..748674+ (Gracilaria gracilis GNS1m male)
ATGCGCGCCCTTTCATTCGCCCCGTTCCTCACTCTGCTGCTCTCCCTCTC
GCTGCTGCCGCGCGTCGCCGCGCGTGCCGACGTCGTCCGCTCCGACTGCT
GCTTCCCGCCAGGCCTCACCTTCGACACCTGCCACAGCACGCAGCGCCCC
TGCGCACCGGGCCGCGCCTGCCTCACCGACGACTCGCTCTACCCGTGCTC
GCAGTCGCGCTCGTGCATCTGCTACCCGCAACGCATCCACGCGTGCTCCT
CCGCCGCCCAATGCGCCGTGGGCGAGAGCTGCGCCGCGCGCCCGTACGAC
CACTTCCCGTTCTGCGTCAGCGACGTCGTCGTGTCACTCGACCCCTCCTT
CGTCATCATCAGCTCGTGTTGTGATTCCTCCTTCCCCATACAACCGCCAC
TGACAACTTCCCAACCGCCGCGCCCGACCGACGACCAGCTGCCCGTCGTC
ACCGGCCCCAAGCCCACCGCGCAGCCCACCGCGCCGCCCGCCGTCACCGG
CTCCAAGCCCACCGCGCAGCCCACCGTGCCGCCCACCGCGCAGCCCACCG
TGCCGCCCACCGCGCCGCCCACAGTCACCGACCCCAAGCCCACCGCGCAG
CCCACCGCGCCGCCCGCAAAGCCGCCCGCGCCGTCCCCAAAGCCCAGCGA
GGCGCTGCGTCCCACGCCCACGCGCGACGTCGTCGTCGTGTCCAAGCCGC
GCGCGTCGCCCACGCCCTCGCGCTCCAGGCTGCCGCGCGTGTCCGCGTCG
CCGCGCCCCACGCCGTCGCCGCACCCGAAGATCACCGCCGTGCAGCCGGC
CGATCGACCAAAGCCCTCGCCCACCAGCGCGCCCAGTGGCGGCGGTCGTC
CGCAGCGCACGCGCCCGCCAAAGCCCAGCGGCGGGCTGGCGGGAGATTCG
TGTCGGAGGCGTGGCGAGTGCATTAGTTATCGAAAATGCGTCGATCGCAG
TACCAAGCGCGACTGCGGTGGCGGCGATTGTGTGTGTGTTGGATCGCGCC
TTTGCGTTTGTAATGACCAGTGTACGGACGGTGAGGTGTGCTCGGGGTCG
CCTGGTAGGGCGTACTGTTTCTCGCCGAGGTTGATTGAGATTTTGCCGTA
TGCAAATGCCTTGCCGTGTCCGATAACCAAAccgacgcccacggcgacgc
ctaccaagccgccggggccgaGTACCACGGGACTCACGGGCGAGTCTTGT
CGCATCGACAAGAACTGCGAGGGCGAGCGCAGGTGCGTTGCGGCGCGCAG
TCGCAAGTGCGTCACTTCGGGCGTGCTTTGCGATGGGCGACAGCAGGCGT
GCACCGTGGGAGATAGGGTATGTTATTGTTTCAAGCTTCGGGAATGTAAT
TGCTCGCTTGATTGCGATGATGATGAGGTTTGTACTTCCACATTGTTTGG
GCGAATCTGTCTGTCGTCCGTTCTTACCGAGAAGGATACCATTCTGCAGA
CAATTGGTTGTCCGTCTGCCGGCTCGGGAGCCACTTCTGATGACCCCATT
TTGATTGTCAATCTCGTCGCTCCCGAGAATTCGGATGGGGAGCAAGACGA
TTCATCCTCGGGATCGGGATCTGGTGCGGATCAACAAGATGCGGAGGATG
AAGTGTGCGTTGATGCTCAAGCCCTCAGTCATCTTCAGCCGCACGAGCTC
GTGTACAGGACCCACAGAACCGCTTAcgtactAGTGGGGTAA