Ggra3653.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3653.t2
Unique NameGgra3653.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length176
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:744501..745028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704792.1
PFAMsPDZ,PDZ_2,Peptidase_M50
Max annot lvl2759|Eukaryota
Evalue7.99e-43
EggNOG OGsCOG0750@1|root,2QT40@2759|Eukaryota
Descriptionmetalloendopeptidase activity
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3653Ggra3653Gracilaria gracilis GNS1m malegenetig00000850_pilon 743661..745028 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3653.t2.start1Ggra3653.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 744501..744503 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3653.t2.CDS1Ggra3653.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 744501..745028 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3653.t2.exon1Ggra3653.t2.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 744501..745028 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3653.t2.stop1Ggra3653.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 745026..745028 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3653.t2Ggra3653.t2Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 744501..745028 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3653.t2 ID=Ggra3653.t2|Name=Ggra3653.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=176bp
MDVRVSPKCCTADGGSLMGVQLNSRLTMRRDKQAPLLTRVRSSNEQFARL
CVQTARGLVAAVSNFEQSSKNLSGPVGVVSMGAQLARDDAAALLTFCAVI
SINLALINALPLPALDGGQMVLLGVEWLRGSPVSLRVQDAINRTALLLLL
AFSGVLFVGDLERLQIVAALQRLFS*
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spliced messenger RNA

>Ggra3653.t2 ID=Ggra3653.t2|Name=Ggra3653.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=528bp|location=Sequence derived from alignment at tig00000850_pilon:744501..745028+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGTGCGCGTGAGCCCAAAGTGCTGCACGGCGGACGGCGGCTCGCT
GATGGGCGTGCAGCTCAACTCACGGCTGACGATGCGGCGCGACAAACAGG
CGCCGCTGCTGACGCGTGTGCGCAGCAGCAACGAGCAGTTTGCACGGCTG
TGCGTGCAGACGGCGCGCGGGCTGGTGGCGGCCGTGAGCAACTTTGAGCA
GTCGTCCAAGAACTTGTCCGGGCCGGTGGGGGTGGTGTCGATGGGCGCGC
AGCTGGCGCGCGACGACGCGGCGGCGCTGCTCACGTTCTGCGCGGTGATC
AGCATCAACTTGGCGCTGATCAACGCGCTGCCGCTGCCCGCGCTGGACGG
CGGCCAGATGGTGCTGCTGGGCGTGGAGTGGCTGCGCGGCAGCCCCGTGT
CGCTGCGCGTGCAGGACGCCATCAACCGCACGGCGCTCCTTCTGCTGCTC
GCCTTCTCCGGCGTGCTGTTCGTGGGCGACCTCGAGCGTCTGCAGATTGT
GGCCGCGCTGCAGCGCCTCTTCAGCTGA
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protein sequence of Ggra3653.t2

>Ggra3653.t2 ID=Ggra3653.t2|Name=Ggra3653.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=176bp
MDVRVSPKCCTADGGSLMGVQLNSRLTMRRDKQAPLLTRVRSSNEQFARL
CVQTARGLVAAVSNFEQSSKNLSGPVGVVSMGAQLARDDAAALLTFCAVI
SINLALINALPLPALDGGQMVLLGVEWLRGSPVSLRVQDAINRTALLLLL
AFSGVLFVGDLERLQIVAALQRLFS*
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mRNA from alignment at tig00000850_pilon:744501..745028+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3653.t2 ID=Ggra3653.t2|Name=Ggra3653.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=528bp|location=Sequence derived from alignment at tig00000850_pilon:744501..745028+ (Gracilaria gracilis GNS1m male)
ATGGACGTGCGCGTGAGCCCAAAGTGCTGCACGGCGGACGGCGGCTCGCT
GATGGGCGTGCAGCTCAACTCACGGCTGACGATGCGGCGCGACAAACAGG
CGCCGCTGCTGACGCGTGTGCGCAGCAGCAACGAGCAGTTTGCACGGCTG
TGCGTGCAGACGGCGCGCGGGCTGGTGGCGGCCGTGAGCAACTTTGAGCA
GTCGTCCAAGAACTTGTCCGGGCCGGTGGGGGTGGTGTCGATGGGCGCGC
AGCTGGCGCGCGACGACGCGGCGGCGCTGCTCACGTTCTGCGCGGTGATC
AGCATCAACTTGGCGCTGATCAACGCGCTGCCGCTGCCCGCGCTGGACGG
CGGCCAGATGGTGCTGCTGGGCGTGGAGTGGCTGCGCGGCAGCCCCGTGT
CGCTGCGCGTGCAGGACGCCATCAACCGCACGGCGCTCCTTCTGCTGCTC
GCCTTCTCCGGCGTGCTGTTCGTGGGCGACCTCGAGCGTCTGCAGATTGT
GGCCGCGCTGCAGCGCCTCTTCAGCTGA
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Coding sequence (CDS) from alignment at tig00000850_pilon:744501..745028+

>Ggra3653.t2 ID=Ggra3653.t2|Name=Ggra3653.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=528bp|location=Sequence derived from alignment at tig00000850_pilon:744501..745028+ (Gracilaria gracilis GNS1m male)
ATGGACGTGCGCGTGAGCCCAAAGTGCTGCACGGCGGACGGCGGCTCGCT
GATGGGCGTGCAGCTCAACTCACGGCTGACGATGCGGCGCGACAAACAGG
CGCCGCTGCTGACGCGTGTGCGCAGCAGCAACGAGCAGTTTGCACGGCTG
TGCGTGCAGACGGCGCGCGGGCTGGTGGCGGCCGTGAGCAACTTTGAGCA
GTCGTCCAAGAACTTGTCCGGGCCGGTGGGGGTGGTGTCGATGGGCGCGC
AGCTGGCGCGCGACGACGCGGCGGCGCTGCTCACGTTCTGCGCGGTGATC
AGCATCAACTTGGCGCTGATCAACGCGCTGCCGCTGCCCGCGCTGGACGG
CGGCCAGATGGTGCTGCTGGGCGTGGAGTGGCTGCGCGGCAGCCCCGTGT
CGCTGCGCGTGCAGGACGCCATCAACCGCACGGCGCTCCTTCTGCTGCTC
GCCTTCTCCGGCGTGCTGTTCGTGGGCGACCTCGAGCGTCTGCAGATTGT
GGCCGCGCTGCAGCGCCTCTTCAGCTGA
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