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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 109760.SPPG_04706T0 |
| Preferred name | cdc17 |
| PFAMs | DNA_ligase_A_C,DNA_ligase_A_M,DNA_ligase_A_N |
| Max annot lvl | 4751|Fungi |
| KEGG rclass | RC00005 |
| KEGG ko | ko:K10747 |
| KEGG Reaction | R00381,R00382,R10822,R10823 |
| KEGG Pathway | ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430 |
| GOs | GO:0000228,GO:0000278,GO:0003674,GO:0003824,GO:0003909,GO:0003910,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006271,GO:0006273,GO:0006281,GO:0006284,GO:0006289,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016070,GO:0016874,GO:0016886,GO:0022402,GO:0022616,GO:0031974,GO:0031981,GO:0033260,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0035753,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043570,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360,GO:1901576,GO:1902969,GO:1903047,GO:1903461 |
| Evalue | 1.4e-208 |
| EggNOG OGs | COG1793@1|root,KOG0967@2759|Eukaryota,38FCP@33154|Opisthokonta,3NW9U@4751|Fungi |
| EC | 6.5.1.1,6.5.1.6,6.5.1.7 |
| Description | DNA ligase |
| COG category | L |
| BRITE | ko00000,ko00001,ko01000,ko03032,ko03400 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra3652.t1.stop1 | Ggra3652.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000850_pilon 741070..741072 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra3652.t1.start1 | Ggra3652.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000850_pilon 743326..743328 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra3652.t1 ID=Ggra3652.t1|Name=Ggra3652.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=753bp MSARRAFVPPTLGAAAAAAAIMRKQRTLTSFFRAASAPSGASGTSDAPPP AAAAAAAAAAAAAAAAAAAAARKRARPLSAPSPAKRARPKPPKSSASAPP AAVAHKRAGDGGAKSLPYAVVADAFCEVEALSGRLQIQAVLSALFRHVIA ASPPDLVRVIYLCINRLAPAHHGVELGVGDSILLKSLSLVTGRSVAALKR AYSDAGDLGDVAYASRTTQKTMFPPPPLTVAKVFDNFCTIASVSGKNAQQ QKQANILKMFVAASKTEAKYLARALSGKLRIHLAEKTVITALAAALVLEA EQVDAHFLLQSDGTKKSKLSTEEERVEQLVKQAAATLSAVYCRLPVWDII VPKLLQFSAVDDRLLDACQLLPGVPVSPMLAKPTNAISRVLERFADASFT CEYKYDGERAQIHRLSDGSIKIYSRNAENLTPKYPDLVQQLPLALKQQYK GCSFIIDSEAVAYDTERAKILPFQELQSRKRKDVNADDIKVKVCIFAFDL LYFDGSSLIEQPLSKRRSVLTDAFDEQHGRFMFAKGHDSKDPEQIMELLN ASVKEGCEGLMVKALDGDNSTYEPANRSQNWLKVKKDYLEGCGDSLDLVP IGGYRGRGKRTGAYGAFLLACYDPDNEEYQSVCKIGTGFSEAQLEEFAKF FNDEQAQRTSDKIKSYYRAPSIAALQPDVWFEAVQVWEVKCADLSISPQH TAGIGRVDADKGVALRFPRFVRVREDKSAEDATTAEQVVEMYLNQSAVAD GS* back to topspliced messenger RNA >Ggra3652.t1 ID=Ggra3652.t1|Name=Ggra3652.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2259bp|location=Sequence derived from alignment at tig00000850_pilon:741070..743328- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGAGCGCCCGACGCGCCTTCGTGCCGCCGACGTTGGGCGCAGCCGCCGC AGCAGCAGCCATCATGCGCAAGCAACGTACGCTCACGTCCTTCTTCCGCG CCGCCAGCGCGCCGTCCGGCGCATCCGGCACGTCCGACGCGCCGCCGCCC GCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGC CGCCGCCGCCGCACGCAAACGCGCGCGCCCGCTCTCCGCGCCGTCGCCCG CCAAGCGCGCGCGCCCCAAGCCGCCCAAGTCGTCCGCGTCCGCGCCGCCC GCCGCCGTCGCGCACAAGCGCGCCGGCGACGGCGGCGCAAAGTCGCTGCC GTACGCCGTGGTGGCCGACGCCTTCTGCGAGGTGGAGGCCTTGTCCGGCC GCCTGCAGATCCAGGCCGTGCTCAGCGCGCTGTTCCGCCACGTCATCGCC GCCTCGCCGCCTGATTTGGTGCGCGTCATCTACCTGTGCATCAACCGATT GGCGCCGGCGCACCACGGCGTCGAGCTGGGTGTGGGCGACTCCATCTTGC TCAAGAGCCTGTCGCTGGTCACTGGTCGCTCCGTCGCCGCGCTCAAGCGC GCCTACAGTGACGCGGGCGACCTGGGCGATGTGGCGTACGCCTCGCGTAC CACGCAGAAGACCATGTTTCCGCCCCCGCCGCTCACCGTTGCCAAAGTGT TTGACAACTTTTGCACCATTGCGTCCGTTTCGGGCAAGAACGCGCAGCAG CAGAAGCAGGCCAACATTCTCAAGATGTTTGTGGCCGCTTCCAAGACCGA GGCCAAGTACTTGGCGCGCGCCCTGTCGGGCAAGCTGCGCATCCATCTGG CGGAGAAGACCGTCATCACCGCCTTGGCCGCCGCCCTCGTGCTGGAGGCT GAGCAGGTTGATGCCCACTTTCTGCTGCAGTCAGACGGCACCAAGAAGAG CAAACTGTCCACTGAAGAGGAGCGCGTGGAGCAGCTTGTCAAGCAAGCCG CCGCCACCTTGAGCGCTGTGTATTGTCGATTGCCCGTGTGGGATATCATC GTGCCCAAGTTACTGCAGTTTAGCGCCGTCGATGACCGACTGCTTGACGC GTGTCAATTGCTGCCAGGCGTACCGGTGTCTCCCATGCTTGCAAAGCCCA CAAACGCCATTTCGCGCGTGCTGGAGCGCTTTGCGGACGCTTCTTTTACG TGCGAGTACAAGTATGATGGAGAACGCGCGCAGATTCATCGCCTCTCTGA TGGCTCCATCAAGATTTACAGTCGTAATGCGGAGAATTTGACACCCAAGT ACCCAGACTTGGTGCAACAGTTACCCTTGGCTTTGAAGCAACAGTACAAA GGCTGCTCGTTTATTATTGATTCGGAGGCGGTGGCGTACGACACGGAGAG AGCCAAGATTCTGCCGTTCCAGGAACTGCAAAGCAGGAAGCGCAAGGATG TGAACGCAGACGATATCAAGGTGAAGGTTTGTATCTTTGCGTTTGACCTG CTTTACTTTGACGGAAGCAGTCTCATCGAGCAGCCGTTGAGCAAGAGGAG GTCGGTATTGACGGATGCGTTTGACGAACAGCACGGCAGGTTTATGTTTG CAAAGGGACACGACTCGAAGGACCCCGAGCAGATCATGGAGTTGCTGAAC GCCAGCGTGAAGGAAGGCTGCGAGGGGCTGATGGTGAAGGCGCTGGACGG CGACAACTCCACGTACGAGCCGGCGAATCGCAGCCAGAACTGGCTCAAGG TGAAGAAGGATTACCTGGAAGGGTGTGGGGACTCGTTGGATCTGGTGCCC ATCGGCGGCTATCGCGGCCGCGGCAAACGAACCGGTGCGTATGGGGCGTT CTTGCTGGCGTGTTATGATCCCGACAATGAGGAGTACCAATCGGTGTGCA AGATCGGCACCGGCTTCAGCGAGGCGCAACTGGAGGAGTTTGCAAAGTTC TTTAATGATGAGCAGGCGCAACGTACCAGTGACAAGATAAAGTCGTACTA TCGGGCGCCGAGCATTGCGGCGTTGCAGCCGGATGTGTGGTTCGAGGCGG TGCAGGTGTGGGAGGTGAAATGCGCGGACCTGTCCATCTCGCCGCAGCAC ACGGCCGGAATTGGACGTGTGGACGCGGACAAGGGCGTGGCGTTGCGGTT TCCGCGGTTTGTGCGCGTGAGAGAGGACAAGAGCGCCGAGGACGCTACTA CAGCGGAACAAGTGGTGGAAATGTACCTGAACCAATCGGCGGTAGCAGAC GGCAGTTAA back to topprotein sequence of Ggra3652.t1 >Ggra3652.t1 ID=Ggra3652.t1|Name=Ggra3652.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=753bp
MSARRAFVPPTLGAAAAAAAIMRKQRTLTSFFRAASAPSGASGTSDAPPP AAAAAAAAAAAAAAAAAAAAARKRARPLSAPSPAKRARPKPPKSSASAPP AAVAHKRAGDGGAKSLPYAVVADAFCEVEALSGRLQIQAVLSALFRHVIA ASPPDLVRVIYLCINRLAPAHHGVELGVGDSILLKSLSLVTGRSVAALKR AYSDAGDLGDVAYASRTTQKTMFPPPPLTVAKVFDNFCTIASVSGKNAQQ QKQANILKMFVAASKTEAKYLARALSGKLRIHLAEKTVITALAAALVLEA EQVDAHFLLQSDGTKKSKLSTEEERVEQLVKQAAATLSAVYCRLPVWDII VPKLLQFSAVDDRLLDACQLLPGVPVSPMLAKPTNAISRVLERFADASFT CEYKYDGERAQIHRLSDGSIKIYSRNAENLTPKYPDLVQQLPLALKQQYK GCSFIIDSEAVAYDTERAKILPFQELQSRKRKDVNADDIKVKVCIFAFDL LYFDGSSLIEQPLSKRRSVLTDAFDEQHGRFMFAKGHDSKDPEQIMELLN ASVKEGCEGLMVKALDGDNSTYEPANRSQNWLKVKKDYLEGCGDSLDLVP IGGYRGRGKRTGAYGAFLLACYDPDNEEYQSVCKIGTGFSEAQLEEFAKF FNDEQAQRTSDKIKSYYRAPSIAALQPDVWFEAVQVWEVKCADLSISPQH TAGIGRVDADKGVALRFPRFVRVREDKSAEDATTAEQVVEMYLNQSAVAD GS* back to topmRNA from alignment at tig00000850_pilon:741070..743328- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra3652.t1 ID=Ggra3652.t1|Name=Ggra3652.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2259bp|location=Sequence derived from alignment at tig00000850_pilon:741070..743328- (Gracilaria gracilis GNS1m male) ATGAGCGCCCGACGCGCCTTCGTGCCGCCGACGTTGGGCGCAGCCGCCGC
AGCAGCAGCCATCATGCGCAAGCAACGTACGCTCACGTCCTTCTTCCGCG
CCGCCAGCGCGCCGTCCGGCGCATCCGGCACGTCCGACGCGCCGCCGCCC
GCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGC
CGCCGCCGCCGCACGCAAACGCGCGCGCCCGCTCTCCGCGCCGTCGCCCG
CCAAGCGCGCGCGCCCCAAGCCGCCCAAGTCGTCCGCGTCCGCGCCGCCC
GCCGCCGTCGCGCACAAGCGCGCCGGCGACGGCGGCGCAAAGTCGCTGCC
GTACGCCGTGGTGGCCGACGCCTTCTGCGAGGTGGAGGCCTTGTCCGGCC
GCCTGCAGATCCAGGCCGTGCTCAGCGCGCTGTTCCGCCACGTCATCGCC
GCCTCGCCGCCTGATTTGGTGCGCGTCATCTACCTGTGCATCAACCGATT
GGCGCCGGCGCACCACGGCGTCGAGCTGGGTGTGGGCGACTCCATCTTGC
TCAAGAGCCTGTCGCTGGTCACTGGTCGCTCCGTCGCCGCGCTCAAGCGC
GCCTACAGTGACGCGGGCGACCTGGGCGATGTGGCGTACGCCTCGCGTAC
CACGCAGAAGACCATGTTTCCGCCCCCGCCGCTCACCGTTGCCAAAGTGT
TTGACAACTTTTGCACCATTGCGTCCGTTTCGGGCAAGAACGCGCAGCAG
CAGAAGCAGGCCAACATTCTCAAGATGTTTGTGGCCGCTTCCAAGACCGA
GGCCAAGTACTTGGCGCGCGCCCTGTCGGGCAAGCTGCGCATCCATCTGG
CGGAGAAGACCGTCATCACCGCCTTGGCCGCCGCCCTCGTGCTGGAGGCT
GAGCAGGTTGATGCCCACTTTCTGCTGCAGTCAGACGGCACCAAGAAGAG
CAAACTGTCCACTGAAGAGGAGCGCGTGGAGCAGCTTGTCAAGCAAGCCG
CCGCCACCTTGAGCGCTGTGTATTGTCGATTGCCCGTGTGGGATATCATC
GTGCCCAAGTTACTGCAGTTTAGCGCCGTCGATGACCGACTGCTTGACGC
GTGTCAATTGCTGCCAGGCGTACCGGTGTCTCCCATGCTTGCAAAGCCCA
CAAACGCCATTTCGCGCGTGCTGGAGCGCTTTGCGGACGCTTCTTTTACG
TGCGAGTACAAGTATGATGGAGAACGCGCGCAGATTCATCGCCTCTCTGA
TGGCTCCATCAAGATTTACAGTCGTAATGCGGAGAATTTGACACCCAAGT
ACCCAGACTTGGTGCAACAGTTACCCTTGGCTTTGAAGCAACAGTACAAA
GGCTGCTCGTTTATTATTGATTCGGAGGCGGTGGCGTACGACACGGAGAG
AGCCAAGATTCTGCCGTTCCAGGAACTGCAAAGCAGGAAGCGCAAGGATG
TGAACGCAGACGATATCAAGGTGAAGGTTTGTATCTTTGCGTTTGACCTG
CTTTACTTTGACGGAAGCAGTCTCATCGAGCAGCCGTTGAGCAAGAGGAG
GTCGGTATTGACGGATGCGTTTGACGAACAGCACGGCAGGTTTATGTTTG
CAAAGGGACACGACTCGAAGGACCCCGAGCAGATCATGGAGTTGCTGAAC
GCCAGCGTGAAGGAAGGCTGCGAGGGGCTGATGGTGAAGGCGCTGGACGG
CGACAACTCCACGTACGAGCCGGCGAATCGCAGCCAGAACTGGCTCAAGG
TGAAGAAGGATTACCTGGAAGGGTGTGGGGACTCGTTGGATCTGGTGCCC
ATCGGCGGCTATCGCGGCCGCGGCAAACGAACCGGTGCGTATGGGGCGTT
CTTGCTGGCGTGTTATGATCCCGACAATGAGGAGTACCAATCGGTGTGCA
AGATCGGCACCGGCTTCAGCGAGGCGCAACTGGAGGAGTTTGCAAAGTTC
TTTAATGATGAGCAGGCGCAACGTACCAGTGACAAGATAAAGTCGTACTA
TCGGGCGCCGAGCATTGCGGCGTTGCAGCCGGATGTGTGGTTCGAGGCGG
TGCAGGTGTGGGAGGTGAAATGCGCGGACCTGTCCATCTCGCCGCAGCAC
ACGGCCGGAATTGGACGTGTGGACGCGGACAAGGGCGTGGCGTTGCGGTT
TCCGCGGTTTGTGCGCGTGAGAGAGGACAAGAGCGCCGAGGACGCTACTA
CAGCGGAACAAGTGGTGGAAATGTACCTGAACCAATCGGCGGTAGCAGAC
GGCAGTTAA back to topCoding sequence (CDS) from alignment at tig00000850_pilon:741070..743328- >Ggra3652.t1 ID=Ggra3652.t1|Name=Ggra3652.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2259bp|location=Sequence derived from alignment at tig00000850_pilon:741070..743328- (Gracilaria gracilis GNS1m male) ATGAGCGCCCGACGCGCCTTCGTGCCGCCGACGTTGGGCGCAGCCGCCGC AGCAGCAGCCATCATGCGCAAGCAACGTACGCTCACGTCCTTCTTCCGCG CCGCCAGCGCGCCGTCCGGCGCATCCGGCACGTCCGACGCGCCGCCGCCC GCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGC CGCCGCCGCCGCACGCAAACGCGCGCGCCCGCTCTCCGCGCCGTCGCCCG CCAAGCGCGCGCGCCCCAAGCCGCCCAAGTCGTCCGCGTCCGCGCCGCCC GCCGCCGTCGCGCACAAGCGCGCCGGCGACGGCGGCGCAAAGTCGCTGCC GTACGCCGTGGTGGCCGACGCCTTCTGCGAGGTGGAGGCCTTGTCCGGCC GCCTGCAGATCCAGGCCGTGCTCAGCGCGCTGTTCCGCCACGTCATCGCC GCCTCGCCGCCTGATTTGGTGCGCGTCATCTACCTGTGCATCAACCGATT GGCGCCGGCGCACCACGGCGTCGAGCTGGGTGTGGGCGACTCCATCTTGC TCAAGAGCCTGTCGCTGGTCACTGGTCGCTCCGTCGCCGCGCTCAAGCGC GCCTACAGTGACGCGGGCGACCTGGGCGATGTGGCGTACGCCTCGCGTAC CACGCAGAAGACCATGTTTCCGCCCCCGCCGCTCACCGTTGCCAAAGTGT TTGACAACTTTTGCACCATTGCGTCCGTTTCGGGCAAGAACGCGCAGCAG CAGAAGCAGGCCAACATTCTCAAGATGTTTGTGGCCGCTTCCAAGACCGA GGCCAAGTACTTGGCGCGCGCCCTGTCGGGCAAGCTGCGCATCCATCTGG CGGAGAAGACCGTCATCACCGCCTTGGCCGCCGCCCTCGTGCTGGAGGCT GAGCAGGTTGATGCCCACTTTCTGCTGCAGTCAGACGGCACCAAGAAGAG CAAACTGTCCACTGAAGAGGAGCGCGTGGAGCAGCTTGTCAAGCAAGCCG CCGCCACCTTGAGCGCTGTGTATTGTCGATTGCCCGTGTGGGATATCATC GTGCCCAAGTTACTGCAGTTTAGCGCCGTCGATGACCGACTGCTTGACGC GTGTCAATTGCTGCCAGGCGTACCGGTGTCTCCCATGCTTGCAAAGCCCA CAAACGCCATTTCGCGCGTGCTGGAGCGCTTTGCGGACGCTTCTTTTACG TGCGAGTACAAGTATGATGGAGAACGCGCGCAGATTCATCGCCTCTCTGA TGGCTCCATCAAGATTTACAGTCGTAATGCGGAGAATTTGACACCCAAGT ACCCAGACTTGGTGCAACAGTTACCCTTGGCTTTGAAGCAACAGTACAAA GGCTGCTCGTTTATTATTGATTCGGAGGCGGTGGCGTACGACACGGAGAG AGCCAAGATTCTGCCGTTCCAGGAACTGCAAAGCAGGAAGCGCAAGGATG TGAACGCAGACGATATCAAGGTGAAGGTTTGTATCTTTGCGTTTGACCTG CTTTACTTTGACGGAAGCAGTCTCATCGAGCAGCCGTTGAGCAAGAGGAG GTCGGTATTGACGGATGCGTTTGACGAACAGCACGGCAGGTTTATGTTTG CAAAGGGACACGACTCGAAGGACCCCGAGCAGATCATGGAGTTGCTGAAC GCCAGCGTGAAGGAAGGCTGCGAGGGGCTGATGGTGAAGGCGCTGGACGG CGACAACTCCACGTACGAGCCGGCGAATCGCAGCCAGAACTGGCTCAAGG TGAAGAAGGATTACCTGGAAGGGTGTGGGGACTCGTTGGATCTGGTGCCC ATCGGCGGCTATCGCGGCCGCGGCAAACGAACCGGTGCGTATGGGGCGTT CTTGCTGGCGTGTTATGATCCCGACAATGAGGAGTACCAATCGGTGTGCA AGATCGGCACCGGCTTCAGCGAGGCGCAACTGGAGGAGTTTGCAAAGTTC TTTAATGATGAGCAGGCGCAACGTACCAGTGACAAGATAAAGTCGTACTA TCGGGCGCCGAGCATTGCGGCGTTGCAGCCGGATGTGTGGTTCGAGGCGG TGCAGGTGTGGGAGGTGAAATGCGCGGACCTGTCCATCTCGCCGCAGCAC ACGGCCGGAATTGGACGTGTGGACGCGGACAAGGGCGTGGCGTTGCGGTT TCCGCGGTTTGTGCGCGTGAGAGAGGACAAGAGCGCCGAGGACGCTACTA CAGCGGAACAAGTGGTGGAAATGTACCTGAACCAATCGGCGGTAGCAGAC GGCAGTTAA back to top
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