Ggra3650.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3650.t1
Unique NameGgra3650.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length456
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:738192..739645 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36331.EPrPI00000018468
PFAMsChromate_transp
Max annot lvl121069|Pythiales
Evalue5.02e-61
EggNOG OGsCOG2059@1|root,2QRJG@2759|Eukaryota,1MCJA@121069|Pythiales
DescriptionChromate Ion Transporter (CHR) Family. Source PGD
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3650Ggra3650Gracilaria gracilis GNS1m malegenetig00000850_pilon 738192..739645 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3650.t1Ggra3650.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 738192..739645 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3650.t1.stop1Ggra3650.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 738192..738194 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3650.t1.CDS1Ggra3650.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 738192..738651 -
Ggra3650.t1.CDS2Ggra3650.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000850_pilon 738738..739645 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3650.t1.exon1Ggra3650.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 738192..738651 -
Ggra3650.t1.exon2Ggra3650.t1.exon2Gracilaria gracilis GNS1m maleexontig00000850_pilon 738738..739645 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3650.t1.intron1Ggra3650.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000850_pilon 738652..738737 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3650.t1.start1Ggra3650.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 739643..739645 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3650.t1 ID=Ggra3650.t1|Name=Ggra3650.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=456bp
MAVVHERHGEEAPLLPTASSVHDATKPTFGRFLRAFWPLTMIAFGGPQAH
VALMHHKFVHAPSPSSDAPPPSSSDAPRVPQSTFLELYALAQSLPGPGST
QLAAALGATFGGAAGAALTFLVWHLPGFVAMSLAGVWFHSHLHDHRSLAL
IRRLTELAIGFISAAFAFVLIAAFRIVHGTCASHPVKMAIAIVSMFVAVT
IPPASSSWVFILLLLAGGLSYYVYTALTDNSSRLQQQPSPIPQWHSNVSR
TTGIALLCICALITVIIAALPPSDLGFTVIKIFWRIGLCVFGGGVIVVPM
LMNEIVESGLLPTSVFLAGFALFGCIPGPMFNIAPFLGAAIIPIKGAFFG
SLGLFGPGLLLQIGLLPFWQRVRCINSAQIVLQGTNSAASGLIVAGVWML
LKKTFVGPTAFALTCSSAAASLVYALPPALNILCHGVAGLVLVLFNVGGP
FSSAA*
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spliced messenger RNA

>Ggra3650.t1 ID=Ggra3650.t1|Name=Ggra3650.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1368bp|location=Sequence derived from alignment at tig00000850_pilon:738192..739645- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGTCGTCCACGAGCGCCACGGCGAGGAAGCGCCGCTGCTGCCGAC
GGCGTCGTCAGTGCACGACGCCACAAAGCCCACCTTCGGTCGCTTCCTGC
GCGCCTTCTGGCCGCTCACGATGATCGCCTTCGGCGGACCGCAGGCGCAC
GTAGCGCTCATGCACCACAAGTTCGTGCACGCGCCGTCGCCGTCGTCAGA
CGCGCCGCCGCCGTCGTCTTCAGACGCGCCGCGCGTGCCGCAGTCCACCT
TCCTGGAGCTGTACGCGCTGGCGCAGTCGCTGCCGGGGCCGGGCTCCACG
CAGCTGGCGGCGGCGCTGGGCGCCACTTTTGGCGGCGCTGCCGGCGCCGC
GCTCACCTTCTTGGTGTGGCACTTGCCGGGCTTTGTGGCCATGAGCTTGG
CGGGCGTGTGGTTCCACTCGCACCTGCATGACCACCGCTCGCTCGCGCTT
ATTCGGCGCCTCACCGAGCTGGCCATCGGCTTCATTTCTGCCGCGTTTGC
CTTTGTGTTGATCGCTGCCTTTCGCATTGTTCATGGCACTTGCGCTTCGC
ACCCCGTCAAAATGGCTATTGCTATCGTCTCCATGTTTGTCGCCGTCACC
ATTCCGCCCGCTTCTTCGTCCTGGGTCTTTATTCTGCTCCTGCTGGCTGG
TGGCCTTTCTTACTATGTGTACACTGCGCTCACTGATAACTCCTCCCGCC
TGCAGCAGCAACCCTCCCCCATTCCGCAATGGCATTCCAACGTTTCGCGT
ACCACTGGAATTGCTCTGCTCTGCATCTGCGCTCTCATCACCGTTATCAT
CGCCGCATTGCCGCCCTCTGATCTGGGCTTCACCGTTATCAAGATCTTCT
GGCGCATCGGCCTGTGCGTGTTTGGAGGCGGTGTCATTGTCGTCCCCATG
CTAATGAATGAAATCGTTGAATCTGGTCTCTTACCAACCTCCGTCTTCCT
GGCCGGTTTCGCACTGTTCGGCTGCATCCCCGGCCCCATGTTCAACATAG
CGCCGTTCCTGGGCGCCGCCATCATCCCGATCAAGGGTGCATTTTTCGGC
TCGCTGGGATTGTTCGGCCCCGGTCTTCTCCTTCAGATTGGCTTGCTGCC
GTTTTGGCAGCGTGTGCGCTGCATCAACAGCGCGCAGATTGTGTTGCAGG
GAACAAATTCGGCCGCCTCCGGCCTCATTGTGGCTGGCGTGTGGATGCTG
TTGAAGAAAACGTTTGTGGGACCCACTGCGTTTGCTCTCACCTGTTCCTC
CGCCGCCGCTTCCTTGGTTTATGCACTGCCTCCTGCGCTTAATATTTTGT
GCCATGGCGTTGCTGGCTTGGTGCTGGTTTTGTTCAATGTAGGGGGTCCC
TTTTCTAGCGCCGCCTAG
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protein sequence of Ggra3650.t1

>Ggra3650.t1 ID=Ggra3650.t1|Name=Ggra3650.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=456bp
MAVVHERHGEEAPLLPTASSVHDATKPTFGRFLRAFWPLTMIAFGGPQAH
VALMHHKFVHAPSPSSDAPPPSSSDAPRVPQSTFLELYALAQSLPGPGST
QLAAALGATFGGAAGAALTFLVWHLPGFVAMSLAGVWFHSHLHDHRSLAL
IRRLTELAIGFISAAFAFVLIAAFRIVHGTCASHPVKMAIAIVSMFVAVT
IPPASSSWVFILLLLAGGLSYYVYTALTDNSSRLQQQPSPIPQWHSNVSR
TTGIALLCICALITVIIAALPPSDLGFTVIKIFWRIGLCVFGGGVIVVPM
LMNEIVESGLLPTSVFLAGFALFGCIPGPMFNIAPFLGAAIIPIKGAFFG
SLGLFGPGLLLQIGLLPFWQRVRCINSAQIVLQGTNSAASGLIVAGVWML
LKKTFVGPTAFALTCSSAAASLVYALPPALNILCHGVAGLVLVLFNVGGP
FSSAA*
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mRNA from alignment at tig00000850_pilon:738192..739645-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3650.t1 ID=Ggra3650.t1|Name=Ggra3650.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1454bp|location=Sequence derived from alignment at tig00000850_pilon:738192..739645- (Gracilaria gracilis GNS1m male)
ATGGCCGTCGTCCACGAGCGCCACGGCGAGGAAGCGCCGCTGCTGCCGAC
GGCGTCGTCAGTGCACGACGCCACAAAGCCCACCTTCGGTCGCTTCCTGC
GCGCCTTCTGGCCGCTCACGATGATCGCCTTCGGCGGACCGCAGGCGCAC
GTAGCGCTCATGCACCACAAGTTCGTGCACGCGCCGTCGCCGTCGTCAGA
CGCGCCGCCGCCGTCGTCTTCAGACGCGCCGCGCGTGCCGCAGTCCACCT
TCCTGGAGCTGTACGCGCTGGCGCAGTCGCTGCCGGGGCCGGGCTCCACG
CAGCTGGCGGCGGCGCTGGGCGCCACTTTTGGCGGCGCTGCCGGCGCCGC
GCTCACCTTCTTGGTGTGGCACTTGCCGGGCTTTGTGGCCATGAGCTTGG
CGGGCGTGTGGTTCCACTCGCACCTGCATGACCACCGCTCGCTCGCGCTT
ATTCGGCGCCTCACCGAGCTGGCCATCGGCTTCATTTCTGCCGCGTTTGC
CTTTGTGTTGATCGCTGCCTTTCGCATTGTTCATGGCACTTGCGCTTCGC
ACCCCGTCAAAATGGCTATTGCTATCGTCTCCATGTTTGTCGCCGTCACC
ATTCCGCCCGCTTCTTCGTCCTGGGTCTTTATTCTGCTCCTGCTGGCTGG
TGGCCTTTCTTACTATGTGTACACTGCGCTCACTGATAACTCCTCCCGCC
TGCAGCAGCAACCCTCCCCCATTCCGCAATGGCATTCCAACGTTTCGCGT
ACCACTGGAATTGCTCTGCTCTGCATCTGCGCTCTCATCACCGTTATCAT
CGCCGCATTGCCGCCCTCTGATCTGGGCTTCACCGTTATCAAGATCTTCT
GGCGCATCGGCCTGTGCGTGTTTGGAGGCGGTGTCATTGTCGTCCCCATG
CTAATGAAGTACGTATGCTCAATAACACACACCCCGCGTAGCACCCTCTT
TACCCTCTTTACCAACCACCCCCCCGACTAACCGTTTCACGCAGTGAAAT
CGTTGAATCTGGTCTCTTACCAACCTCCGTCTTCCTGGCCGGTTTCGCAC
TGTTCGGCTGCATCCCCGGCCCCATGTTCAACATAGCGCCGTTCCTGGGC
GCCGCCATCATCCCGATCAAGGGTGCATTTTTCGGCTCGCTGGGATTGTT
CGGCCCCGGTCTTCTCCTTCAGATTGGCTTGCTGCCGTTTTGGCAGCGTG
TGCGCTGCATCAACAGCGCGCAGATTGTGTTGCAGGGAACAAATTCGGCC
GCCTCCGGCCTCATTGTGGCTGGCGTGTGGATGCTGTTGAAGAAAACGTT
TGTGGGACCCACTGCGTTTGCTCTCACCTGTTCCTCCGCCGCCGCTTCCT
TGGTTTATGCACTGCCTCCTGCGCTTAATATTTTGTGCCATGGCGTTGCT
GGCTTGGTGCTGGTTTTGTTCAATGTAGGGGGTCCCTTTTCTAGCGCCGC
CTAG
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Coding sequence (CDS) from alignment at tig00000850_pilon:738192..739645-

>Ggra3650.t1 ID=Ggra3650.t1|Name=Ggra3650.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1368bp|location=Sequence derived from alignment at tig00000850_pilon:738192..739645- (Gracilaria gracilis GNS1m male)
ATGGCCGTCGTCCACGAGCGCCACGGCGAGGAAGCGCCGCTGCTGCCGAC
GGCGTCGTCAGTGCACGACGCCACAAAGCCCACCTTCGGTCGCTTCCTGC
GCGCCTTCTGGCCGCTCACGATGATCGCCTTCGGCGGACCGCAGGCGCAC
GTAGCGCTCATGCACCACAAGTTCGTGCACGCGCCGTCGCCGTCGTCAGA
CGCGCCGCCGCCGTCGTCTTCAGACGCGCCGCGCGTGCCGCAGTCCACCT
TCCTGGAGCTGTACGCGCTGGCGCAGTCGCTGCCGGGGCCGGGCTCCACG
CAGCTGGCGGCGGCGCTGGGCGCCACTTTTGGCGGCGCTGCCGGCGCCGC
GCTCACCTTCTTGGTGTGGCACTTGCCGGGCTTTGTGGCCATGAGCTTGG
CGGGCGTGTGGTTCCACTCGCACCTGCATGACCACCGCTCGCTCGCGCTT
ATTCGGCGCCTCACCGAGCTGGCCATCGGCTTCATTTCTGCCGCGTTTGC
CTTTGTGTTGATCGCTGCCTTTCGCATTGTTCATGGCACTTGCGCTTCGC
ACCCCGTCAAAATGGCTATTGCTATCGTCTCCATGTTTGTCGCCGTCACC
ATTCCGCCCGCTTCTTCGTCCTGGGTCTTTATTCTGCTCCTGCTGGCTGG
TGGCCTTTCTTACTATGTGTACACTGCGCTCACTGATAACTCCTCCCGCC
TGCAGCAGCAACCCTCCCCCATTCCGCAATGGCATTCCAACGTTTCGCGT
ACCACTGGAATTGCTCTGCTCTGCATCTGCGCTCTCATCACCGTTATCAT
CGCCGCATTGCCGCCCTCTGATCTGGGCTTCACCGTTATCAAGATCTTCT
GGCGCATCGGCCTGTGCGTGTTTGGAGGCGGTGTCATTGTCGTCCCCATG
CTAATGAATGAAATCGTTGAATCTGGTCTCTTACCAACCTCCGTCTTCCT
GGCCGGTTTCGCACTGTTCGGCTGCATCCCCGGCCCCATGTTCAACATAG
CGCCGTTCCTGGGCGCCGCCATCATCCCGATCAAGGGTGCATTTTTCGGC
TCGCTGGGATTGTTCGGCCCCGGTCTTCTCCTTCAGATTGGCTTGCTGCC
GTTTTGGCAGCGTGTGCGCTGCATCAACAGCGCGCAGATTGTGTTGCAGG
GAACAAATTCGGCCGCCTCCGGCCTCATTGTGGCTGGCGTGTGGATGCTG
TTGAAGAAAACGTTTGTGGGACCCACTGCGTTTGCTCTCACCTGTTCCTC
CGCCGCCGCTTCCTTGGTTTATGCACTGCCTCCTGCGCTTAATATTTTGT
GCCATGGCGTTGCTGGCTTGGTGCTGGTTTTGTTCAATGTAGGGGGTCCC
TTTTCTAGCGCCGCCTAG
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