Ggra3649.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3649.t1
Unique Name	Ggra3649.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	510

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000850_pilon	contig	tig00000850_pilon:729948..731477 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	391612.CY0110_09812
Preferred name	amgP
PFAMs	APH
Max annot lvl	2\|Bacteria
Evalue	3.98e-07
EggNOG OGs	COG3173@1\|root,COG3173@2\|Bacteria
Description	very-long-chain-acyl-CoA dehydrogenase activity
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3649	Ggra3649	Gracilaria gracilis GNS1m male	gene	tig00000850_pilon 729948..731477 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3649.t1.stop1	Ggra3649.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000850_pilon 729948..729950 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3649.t1.CDS1	Ggra3649.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000850_pilon 729948..731477 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3649.t1.exon1	Ggra3649.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000850_pilon 729948..731477 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3649.t1.start1	Ggra3649.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000850_pilon 731475..731477 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3649.t1	Ggra3649.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000850_pilon 729948..731477 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000850_pilon:729948..731477-
coding sequence from alignment at tig00000850_pilon:729948..731477-

mRNA sequence

>Ggra3649.t1 ID=Ggra3649.t1|Name=Ggra3649.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=510bp
MELGDINEAKMFTISTTQLRVWEDVPKVLPNRHCFVLVISSHRRHKVLAQ
TLPDGTLTLPIARPLATDVEQWDSDMDQIETYLRKALGIRLHMSKYLWRK
KKPQKCSFWGNEYVDMQVLFLNPLEELNCANERGRWISLSNLWQLNWFEL
NKCVELDLSHLIAQTMGYDHEIFSLTKPWVLVTPTIEINTWVQGVLADKD
IEVQSDLEVEHSRHTSTVWSCEVDIEFSDDSYTEELSETLYVKRSLPMTR
EADRLLVVDEMINDLTPIVVASHESDCLVIHRDAGNMDDEEHDYKQLMNT
LAKLHVGTMNQLGKLKATGVRVRDSNWLISNIIWIAYHPATNKLFENSVG
GMLNVQYLRSQVENIIKACHKLSSYQMPNTLVHGDLHPDNIGGRELGESA
YRFYNWENAVITHPFVDPGSWRKLNEVPDSEEVKAAVKMYCKYWCTYLDD
EDYELVLELAALLHSGVIVHRLLLEYELYGVRRDDFLSSLNEEIVLLSGQ
SAEIAKKFF*

spliced messenger RNA

>Ggra3649.t1 ID=Ggra3649.t1|Name=Ggra3649.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1530bp|location=Sequence derived from alignment at tig00000850_pilon:729948..731477- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACTGGGTGACATTAATGAAGCTAAAATGTTCACAATATCGACCAC
CCAACTGAGGGTTTGGGAAGATGTACCTAAAGTTTTACCCAATCGCCATT
GCTTTGTGCTAGTCATTTCATCTCATCGACGCCACAAAGTTCTAGCACAG
ACTCTACCAGACGGAACTCTTACACTGCCCATAGCACGACCGTTGGCCAC
AGATGTGGAACAGTGGGATTCCGATATGGACCAAATTGAGACGTATCTGA
GGAAAGCGCTGGGTATACGGTTGCACATGTCTAAATACCTATGGAGGAAG
AAGAAACCACAAAAATGCAGCTTCTGGGGGAATGAATATGTTGATATGCA
GGTGCTTTTTCTGAACCCACTAGAAGAACTTAATTGCGCTAATGAGAGGG
GAAGGTGGATAAGTCTTAGCAATCTATGGCAGTTGAATTGGTTTGAGCTA
AACAAGTGCGTTGAACTGGACCTAAGTCACCTCATCGCTCAGACGATGGG
ATACGACCATGAAATTTTCTCACTTACCAAACCCTGGGTTCTTGTCACTC
CCACAATCGAAATCAACACTTGGGTACAAGGAGTACTTGCCGATAAGGAC
ATCGAAGTTCAATCAGACCTTGAAGTTGAGCATTCGCGACACACATCCAC
TGTCTGGTCTTGCGAAGTGGATATCGAGTTTAGCGATGACTCTTATACGG
AAGAACTATCCGAAACACTTTACGTAAAAAGGTCACTACCAATGACACGT
GAAGCGGATAGATTGTTGGTCGTCGACGAGATGATTAACGACCTTACTCC
TATCGTTGTGGCCTCTCATGAAAGCGATTGCCTCGTTATTCATAGGGATG
CAGGGAACATGGATGATGAGGAGCATGATTACAAGCAGCTCATGAACACA
TTAGCAAAGTTGCACGTAGGGACTATGAATCAATTAGGAAAGCTGAAGGC
TACTGGAGTAAGGGTTCGCGACTCAAACTGGCTCATTTCGAACATTATAT
GGATTGCGTACCATCCAGCGACAAATAAGTTGTTCGAAAACAGCGTTGGG
GGCATGTTGAATGTACAGTATCTTCGTTCGCAAGTGGAGAACATAATCAA
GGCCTGTCATAAGTTGTCCAGTTATCAAATGCCGAACACTTTGGTGCATG
GAGACCTCCACCCTGACAATATTGGGGGTCGAGAACTTGGGGAAAGTGCT
TATCGATTCTACAACTGGGAAAATGCCGTAATCACTCATCCTTTCGTAGA
TCCCGGCAGCTGGAGGAAACTGAATGAGGTTCCAGATTCAGAAGAAGTGA
AAGCCGCTGTTAAAATGTATTGCAAGTACTGGTGTACTTATTTGGATGAC
GAAGATTATGAACTTGTTCTCGAGTTAGCCGCGTTACTGCACTCTGGGGT
GATAGTCCATAGGCTACTGTTGGAATATGAGTTGTATGGAGTGAGGCGGG
ACGACTTCTTGAGCTCTCTGAATGAAGAAATTGTATTGCTCAGTGGGCAA
AGCGCTGAGATTGCAAAGAAGTTCTTTTGA

protein sequence of Ggra3649.t1

>Ggra3649.t1 ID=Ggra3649.t1|Name=Ggra3649.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=510bp
MELGDINEAKMFTISTTQLRVWEDVPKVLPNRHCFVLVISSHRRHKVLAQ
TLPDGTLTLPIARPLATDVEQWDSDMDQIETYLRKALGIRLHMSKYLWRK
KKPQKCSFWGNEYVDMQVLFLNPLEELNCANERGRWISLSNLWQLNWFEL
NKCVELDLSHLIAQTMGYDHEIFSLTKPWVLVTPTIEINTWVQGVLADKD
IEVQSDLEVEHSRHTSTVWSCEVDIEFSDDSYTEELSETLYVKRSLPMTR
EADRLLVVDEMINDLTPIVVASHESDCLVIHRDAGNMDDEEHDYKQLMNT
LAKLHVGTMNQLGKLKATGVRVRDSNWLISNIIWIAYHPATNKLFENSVG
GMLNVQYLRSQVENIIKACHKLSSYQMPNTLVHGDLHPDNIGGRELGESA
YRFYNWENAVITHPFVDPGSWRKLNEVPDSEEVKAAVKMYCKYWCTYLDD
EDYELVLELAALLHSGVIVHRLLLEYELYGVRRDDFLSSLNEEIVLLSGQ
SAEIAKKFF*

mRNA from alignment at tig00000850_pilon:729948..731477-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3649.t1 ID=Ggra3649.t1|Name=Ggra3649.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1530bp|location=Sequence derived from alignment at tig00000850_pilon:729948..731477- (Gracilaria gracilis GNS1m male)
ATGGAACTGGGTGACATTAATGAAGCTAAAATGTTCACAATATCGACCAC
CCAACTGAGGGTTTGGGAAGATGTACCTAAAGTTTTACCCAATCGCCATT
GCTTTGTGCTAGTCATTTCATCTCATCGACGCCACAAAGTTCTAGCACAG
ACTCTACCAGACGGAACTCTTACACTGCCCATAGCACGACCGTTGGCCAC
AGATGTGGAACAGTGGGATTCCGATATGGACCAAATTGAGACGTATCTGA
GGAAAGCGCTGGGTATACGGTTGCACATGTCTAAATACCTATGGAGGAAG
AAGAAACCACAAAAATGCAGCTTCTGGGGGAATGAATATGTTGATATGCA
GGTGCTTTTTCTGAACCCACTAGAAGAACTTAATTGCGCTAATGAGAGGG
GAAGGTGGATAAGTCTTAGCAATCTATGGCAGTTGAATTGGTTTGAGCTA
AACAAGTGCGTTGAACTGGACCTAAGTCACCTCATCGCTCAGACGATGGG
ATACGACCATGAAATTTTCTCACTTACCAAACCCTGGGTTCTTGTCACTC
CCACAATCGAAATCAACACTTGGGTACAAGGAGTACTTGCCGATAAGGAC
ATCGAAGTTCAATCAGACCTTGAAGTTGAGCATTCGCGACACACATCCAC
TGTCTGGTCTTGCGAAGTGGATATCGAGTTTAGCGATGACTCTTATACGG
AAGAACTATCCGAAACACTTTACGTAAAAAGGTCACTACCAATGACACGT
GAAGCGGATAGATTGTTGGTCGTCGACGAGATGATTAACGACCTTACTCC
TATCGTTGTGGCCTCTCATGAAAGCGATTGCCTCGTTATTCATAGGGATG
CAGGGAACATGGATGATGAGGAGCATGATTACAAGCAGCTCATGAACACA
TTAGCAAAGTTGCACGTAGGGACTATGAATCAATTAGGAAAGCTGAAGGC
TACTGGAGTAAGGGTTCGCGACTCAAACTGGCTCATTTCGAACATTATAT
GGATTGCGTACCATCCAGCGACAAATAAGTTGTTCGAAAACAGCGTTGGG
GGCATGTTGAATGTACAGTATCTTCGTTCGCAAGTGGAGAACATAATCAA
GGCCTGTCATAAGTTGTCCAGTTATCAAATGCCGAACACTTTGGTGCATG
GAGACCTCCACCCTGACAATATTGGGGGTCGAGAACTTGGGGAAAGTGCT
TATCGATTCTACAACTGGGAAAATGCCGTAATCACTCATCCTTTCGTAGA
TCCCGGCAGCTGGAGGAAACTGAATGAGGTTCCAGATTCAGAAGAAGTGA
AAGCCGCTGTTAAAATGTATTGCAAGTACTGGTGTACTTATTTGGATGAC
GAAGATTATGAACTTGTTCTCGAGTTAGCCGCGTTACTGCACTCTGGGGT
GATAGTCCATAGGCTACTGTTGGAATATGAGTTGTATGGAGTGAGGCGGG
ACGACTTCTTGAGCTCTCTGAATGAAGAAATTGTATTGCTCAGTGGGCAA
AGCGCTGAGATTGCAAAGAAGTTCTTTTGA

Coding sequence (CDS) from alignment at tig00000850_pilon:729948..731477-

>Ggra3649.t1 ID=Ggra3649.t1|Name=Ggra3649.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1530bp|location=Sequence derived from alignment at tig00000850_pilon:729948..731477- (Gracilaria gracilis GNS1m male)
ATGGAACTGGGTGACATTAATGAAGCTAAAATGTTCACAATATCGACCAC
CCAACTGAGGGTTTGGGAAGATGTACCTAAAGTTTTACCCAATCGCCATT
GCTTTGTGCTAGTCATTTCATCTCATCGACGCCACAAAGTTCTAGCACAG
ACTCTACCAGACGGAACTCTTACACTGCCCATAGCACGACCGTTGGCCAC
AGATGTGGAACAGTGGGATTCCGATATGGACCAAATTGAGACGTATCTGA
GGAAAGCGCTGGGTATACGGTTGCACATGTCTAAATACCTATGGAGGAAG
AAGAAACCACAAAAATGCAGCTTCTGGGGGAATGAATATGTTGATATGCA
GGTGCTTTTTCTGAACCCACTAGAAGAACTTAATTGCGCTAATGAGAGGG
GAAGGTGGATAAGTCTTAGCAATCTATGGCAGTTGAATTGGTTTGAGCTA
AACAAGTGCGTTGAACTGGACCTAAGTCACCTCATCGCTCAGACGATGGG
ATACGACCATGAAATTTTCTCACTTACCAAACCCTGGGTTCTTGTCACTC
CCACAATCGAAATCAACACTTGGGTACAAGGAGTACTTGCCGATAAGGAC
ATCGAAGTTCAATCAGACCTTGAAGTTGAGCATTCGCGACACACATCCAC
TGTCTGGTCTTGCGAAGTGGATATCGAGTTTAGCGATGACTCTTATACGG
AAGAACTATCCGAAACACTTTACGTAAAAAGGTCACTACCAATGACACGT
GAAGCGGATAGATTGTTGGTCGTCGACGAGATGATTAACGACCTTACTCC
TATCGTTGTGGCCTCTCATGAAAGCGATTGCCTCGTTATTCATAGGGATG
CAGGGAACATGGATGATGAGGAGCATGATTACAAGCAGCTCATGAACACA
TTAGCAAAGTTGCACGTAGGGACTATGAATCAATTAGGAAAGCTGAAGGC
TACTGGAGTAAGGGTTCGCGACTCAAACTGGCTCATTTCGAACATTATAT
GGATTGCGTACCATCCAGCGACAAATAAGTTGTTCGAAAACAGCGTTGGG
GGCATGTTGAATGTACAGTATCTTCGTTCGCAAGTGGAGAACATAATCAA
GGCCTGTCATAAGTTGTCCAGTTATCAAATGCCGAACACTTTGGTGCATG
GAGACCTCCACCCTGACAATATTGGGGGTCGAGAACTTGGGGAAAGTGCT
TATCGATTCTACAACTGGGAAAATGCCGTAATCACTCATCCTTTCGTAGA
TCCCGGCAGCTGGAGGAAACTGAATGAGGTTCCAGATTCAGAAGAAGTGA
AAGCCGCTGTTAAAATGTATTGCAAGTACTGGTGTACTTATTTGGATGAC
GAAGATTATGAACTTGTTCTCGAGTTAGCCGCGTTACTGCACTCTGGGGT
GATAGTCCATAGGCTACTGTTGGAATATGAGTTGTATGGAGTGAGGCGGG
ACGACTTCTTGAGCTCTCTGAATGAAGAAATTGTATTGCTCAGTGGGCAA
AGCGCTGAGATTGCAAAGAAGTTCTTTTGA