Ggra3647.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3647.t1
Unique NameGgra3647.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length339
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:722058..723074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10228.TriadP52238
Preferred nameRRP1B
PFAMsNop52
Max annot lvl33208|Metazoa
KEGG koko:K14849
GOsGO:0000785,GO:0000791,GO:0000792,GO:0001652,GO:0003674,GO:0003712,GO:0003713,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0006139,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009615,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010563,GO:0010604,GO:0010628,GO:0010921,GO:0010923,GO:0010941,GO:0010942,GO:0016070,GO:0016072,GO:0019219,GO:0019220,GO:0019222,GO:0022613,GO:0030684,GO:0030687,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032991,GO:0034260,GO:0034470,GO:0034641,GO:0034660,GO:0035303,GO:0035305,GO:0035821,GO:0042254,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043086,GO:0043087,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043900,GO:0043902,GO:0043903,GO:0043921,GO:0043923,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045893,GO:0045935,GO:0045936,GO:0045944,GO:0046483,GO:0046782,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048524,GO:0050434,GO:0050789,GO:0050790,GO:0050792,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051252,GO:0051254,GO:0051336,GO:0051346,GO:0051702,GO:0051704,GO:0051707,GO:0051817,GO:0051851,GO:0052312,GO:0052472,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0098586,GO:0140110,GO:1901360,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2001141
Evalue1.35e-22
EggNOG OGsKOG3911@1|root,KOG3911@2759|Eukaryota,38G4R@33154|Opisthokonta,3BCTG@33208|Metazoa
Descriptionribosomal RNA processing
COG categoryA
BRITEko00000,ko01009,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3647Ggra3647Gracilaria gracilis GNS1m malegenetig00000850_pilon 722058..723074 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3647.t1.stop1Ggra3647.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 722058..722060 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3647.t1.CDS1Ggra3647.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 722058..723074 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3647.t1.exon1Ggra3647.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 722058..723074 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3647.t1.start1Ggra3647.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 723072..723074 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3647.t1Ggra3647.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 722058..723074 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3647.t1 ID=Ggra3647.t1|Name=Ggra3647.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=339bp
MKSQHQIKFKRKRSNKKKVNSKVIEHLHETLDVVNNRVVVGERELKFARA
LSDTERRVREASLSSLQSWLRGNGDNLQAREIDRLWKALFYCVWMADKPR
VITSTIENVIGLSDIIGWPFLASFFNCMMREWFGIDRHRVDKYYELTNAA
LSKSADMVLRQTTDEAFIQNLHKLVEILQIQVWDHAHKQGQGFALHILDV
YIDKVMHPTLKRGNLLSGNGAHKVFDNILKGPTQIMKQPQKYSPALIKRI
LERILNRLIELVSAKDIGLKPKFRRDMIARASKHVMSFAANKSTPDKDRK
DLYAVRERMRAVVSEFDESQKQKGKPEDSGDGEGPAQQ*
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spliced messenger RNA

>Ggra3647.t1 ID=Ggra3647.t1|Name=Ggra3647.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00000850_pilon:722058..723074- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAGTCAGCACCAGATAAAATTCAAGCGGAAACGGTCGAACAAGAA
GAAGGTAAACAGCAAAGTAATTGAACACCTACATGAGACACTGGACGTTG
TAAACAACAGAGTCGTGGTTGGGGAGCGCGAACTAAAATTCGCTCGCGCT
CTGTCAGATACCGAACGAAGAGTGCGAGAAGCATCCCTATCATCACTTCA
ATCATGGCTACGGGGAAATGGGGACAACCTACAAGCCAGAGAAATTGACC
GTCTCTGGAAGGCATTGTTCTATTGCGTATGGATGGCAGACAAACCTCGT
GTGATAACAAGCACCATAGAGAACGTGATTGGACTCTCTGATATTATCGG
ATGGCCGTTTCTTGCCAGTTTTTTCAACTGCATGATGCGAGAATGGTTTG
GCATTGACCGACATCGGGTTGACAAGTACTACGAACTTACGAATGCTGCG
TTGAGCAAGTCAGCAGACATGGTATTGCGACAGACCACAGATGAAGCTTT
CATACAGAACTTGCATAAACTGGTTGAGATTCTTCAAATTCAAGTATGGG
ATCATGCGCACAAACAAGGACAAGGGTTTGCACTGCACATCCTCGATGTT
TATATTGATAAGGTCATGCATCCGACCCTCAAGCGAGGAAATTTGCTTTC
TGGTAACGGTGCACACAAAGTGTTTGACAACATTCTGAAAGGTCCAACGC
AGATTATGAAGCAGCCTCAGAAGTACTCGCCAGCGCTCATTAAGAGAATT
TTGGAAAGAATCCTAAACAGACTAATAGAACTAGTCAGTGCCAAAGACAT
TGGACTGAAGCCAAAGTTTCGAAGAGATATGATCGCGAGAGCTTCGAAGC
ATGTGATGTCGTTTGCTGCGAACAAGAGCACACCAGATAAAGATCGGAAG
GATTTGTATGCGGTGAGAGAAAGAATGAGGGCAGTGGTTAGTGAATTTGA
TGAATCTCAAAAGCAAAAGGGCAAGCCAGAGGATTCCGGGGATGGAGAAG
GTCCTGCACAGCAATAG
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protein sequence of Ggra3647.t1

>Ggra3647.t1 ID=Ggra3647.t1|Name=Ggra3647.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=339bp
MKSQHQIKFKRKRSNKKKVNSKVIEHLHETLDVVNNRVVVGERELKFARA
LSDTERRVREASLSSLQSWLRGNGDNLQAREIDRLWKALFYCVWMADKPR
VITSTIENVIGLSDIIGWPFLASFFNCMMREWFGIDRHRVDKYYELTNAA
LSKSADMVLRQTTDEAFIQNLHKLVEILQIQVWDHAHKQGQGFALHILDV
YIDKVMHPTLKRGNLLSGNGAHKVFDNILKGPTQIMKQPQKYSPALIKRI
LERILNRLIELVSAKDIGLKPKFRRDMIARASKHVMSFAANKSTPDKDRK
DLYAVRERMRAVVSEFDESQKQKGKPEDSGDGEGPAQQ*
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mRNA from alignment at tig00000850_pilon:722058..723074-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3647.t1 ID=Ggra3647.t1|Name=Ggra3647.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00000850_pilon:722058..723074- (Gracilaria gracilis GNS1m male)
ATGAAGAGTCAGCACCAGATAAAATTCAAGCGGAAACGGTCGAACAAGAA
GAAGGTAAACAGCAAAGTAATTGAACACCTACATGAGACACTGGACGTTG
TAAACAACAGAGTCGTGGTTGGGGAGCGCGAACTAAAATTCGCTCGCGCT
CTGTCAGATACCGAACGAAGAGTGCGAGAAGCATCCCTATCATCACTTCA
ATCATGGCTACGGGGAAATGGGGACAACCTACAAGCCAGAGAAATTGACC
GTCTCTGGAAGGCATTGTTCTATTGCGTATGGATGGCAGACAAACCTCGT
GTGATAACAAGCACCATAGAGAACGTGATTGGACTCTCTGATATTATCGG
ATGGCCGTTTCTTGCCAGTTTTTTCAACTGCATGATGCGAGAATGGTTTG
GCATTGACCGACATCGGGTTGACAAGTACTACGAACTTACGAATGCTGCG
TTGAGCAAGTCAGCAGACATGGTATTGCGACAGACCACAGATGAAGCTTT
CATACAGAACTTGCATAAACTGGTTGAGATTCTTCAAATTCAAGTATGGG
ATCATGCGCACAAACAAGGACAAGGGTTTGCACTGCACATCCTCGATGTT
TATATTGATAAGGTCATGCATCCGACCCTCAAGCGAGGAAATTTGCTTTC
TGGTAACGGTGCACACAAAGTGTTTGACAACATTCTGAAAGGTCCAACGC
AGATTATGAAGCAGCCTCAGAAGTACTCGCCAGCGCTCATTAAGAGAATT
TTGGAAAGAATCCTAAACAGACTAATAGAACTAGTCAGTGCCAAAGACAT
TGGACTGAAGCCAAAGTTTCGAAGAGATATGATCGCGAGAGCTTCGAAGC
ATGTGATGTCGTTTGCTGCGAACAAGAGCACACCAGATAAAGATCGGAAG
GATTTGTATGCGGTGAGAGAAAGAATGAGGGCAGTGGTTAGTGAATTTGA
TGAATCTCAAAAGCAAAAGGGCAAGCCAGAGGATTCCGGGGATGGAGAAG
GTCCTGCACAGCAATAG
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Coding sequence (CDS) from alignment at tig00000850_pilon:722058..723074-

>Ggra3647.t1 ID=Ggra3647.t1|Name=Ggra3647.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1017bp|location=Sequence derived from alignment at tig00000850_pilon:722058..723074- (Gracilaria gracilis GNS1m male)
ATGAAGAGTCAGCACCAGATAAAATTCAAGCGGAAACGGTCGAACAAGAA
GAAGGTAAACAGCAAAGTAATTGAACACCTACATGAGACACTGGACGTTG
TAAACAACAGAGTCGTGGTTGGGGAGCGCGAACTAAAATTCGCTCGCGCT
CTGTCAGATACCGAACGAAGAGTGCGAGAAGCATCCCTATCATCACTTCA
ATCATGGCTACGGGGAAATGGGGACAACCTACAAGCCAGAGAAATTGACC
GTCTCTGGAAGGCATTGTTCTATTGCGTATGGATGGCAGACAAACCTCGT
GTGATAACAAGCACCATAGAGAACGTGATTGGACTCTCTGATATTATCGG
ATGGCCGTTTCTTGCCAGTTTTTTCAACTGCATGATGCGAGAATGGTTTG
GCATTGACCGACATCGGGTTGACAAGTACTACGAACTTACGAATGCTGCG
TTGAGCAAGTCAGCAGACATGGTATTGCGACAGACCACAGATGAAGCTTT
CATACAGAACTTGCATAAACTGGTTGAGATTCTTCAAATTCAAGTATGGG
ATCATGCGCACAAACAAGGACAAGGGTTTGCACTGCACATCCTCGATGTT
TATATTGATAAGGTCATGCATCCGACCCTCAAGCGAGGAAATTTGCTTTC
TGGTAACGGTGCACACAAAGTGTTTGACAACATTCTGAAAGGTCCAACGC
AGATTATGAAGCAGCCTCAGAAGTACTCGCCAGCGCTCATTAAGAGAATT
TTGGAAAGAATCCTAAACAGACTAATAGAACTAGTCAGTGCCAAAGACAT
TGGACTGAAGCCAAAGTTTCGAAGAGATATGATCGCGAGAGCTTCGAAGC
ATGTGATGTCGTTTGCTGCGAACAAGAGCACACCAGATAAAGATCGGAAG
GATTTGTATGCGGTGAGAGAAAGAATGAGGGCAGTGGTTAGTGAATTTGA
TGAATCTCAAAAGCAAAAGGGCAAGCCAGAGGATTCCGGGGATGGAGAAG
GTCCTGCACAGCAATAG
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