Ggra3645.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3645.t1
Unique Name	Ggra3645.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	312

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000850_pilon	contig	tig00000850_pilon:714026..714961 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	67593.Physo141633
PFAMs	DUF410
Max annot lvl	4776\|Peronosporales
Evalue	5.62e-25
EggNOG OGs	KOG3024@1\|root,KOG3024@2759\|Eukaryota,3Q87V@4776\|Peronosporales
Description	Protein of unknown function (DUF410)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3645	Ggra3645	Gracilaria gracilis GNS1m male	gene	tig00000850_pilon 714026..714961 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3645.t1.start1	Ggra3645.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000850_pilon 714026..714028 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3645.t1.CDS1	Ggra3645.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000850_pilon 714026..714961 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3645.t1.exon1	Ggra3645.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000850_pilon 714026..714961 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3645.t1.stop1	Ggra3645.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000850_pilon 714959..714961 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3645.t1	Ggra3645.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000850_pilon 714026..714961 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000850_pilon:714026..714961+
coding sequence from alignment at tig00000850_pilon:714026..714961+

mRNA sequence

>Ggra3645.t1 ID=Ggra3645.t1|Name=Ggra3645.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=312bp
MASLKSLQKRYERSIEIEDYYGAEQACMMMHHRLTQGKNQAPGDIENALS
ILLKAAVTLLSKKQAQAGSALGLAAVRHYVEYKKKVADESVDALRKIADA
YDPTAGNDFEVRREKLRFLKAALAWSGREDCSGFTNGHATLNALTARAAA
EVENYELSQQLYIYSDAPEESAASLYKYASDHTNVDEHGLALTRVIVRYL
GSENLKDACVVRAKFAQLAGWTSIESGGDGSNTPPLGNFCELLLKICQLE
RTAAPLYQKICQVYQVELSRDESLSPILTKLGTKYFGIQPPQPSGMAGMM
SSMLRGMMGAS*

spliced messenger RNA

>Ggra3645.t1 ID=Ggra3645.t1|Name=Ggra3645.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=936bp|location=Sequence derived from alignment at tig00000850_pilon:714026..714961+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCCTTGAAGAGTTTACAGAAACGGTATGAACGAAGCATCGAAAT
CGAAGACTATTACGGTGCGGAACAGGCTTGTATGATGATGCATCATCGCT
TAACGCAGGGCAAGAACCAGGCACCTGGTGACATCGAAAACGCGCTCAGT
ATTCTCCTTAAAGCCGCTGTTACTCTGTTGTCAAAGAAACAGGCACAAGC
TGGTTCTGCCCTTGGATTGGCCGCTGTGCGACACTACGTAGAGTACAAGA
AGAAGGTCGCAGATGAATCCGTTGACGCACTTCGCAAAATTGCCGACGCT
TATGATCCGACCGCGGGGAACGATTTTGAAGTTCGTCGCGAAAAGTTACG
ATTCTTGAAGGCCGCGTTAGCTTGGTCTGGAAGAGAGGACTGCTCGGGTT
TCACAAATGGTCATGCTACGCTCAACGCTTTGACTGCTCGAGCAGCTGCA
GAGGTTGAGAACTACGAGCTTTCTCAACAGCTGTACATCTATTCGGACGC
ACCAGAGGAAAGCGCTGCTTCCTTGTATAAGTATGCGTCAGACCACACAA
ATGTTGATGAGCATGGCTTGGCTCTAACGCGTGTTATCGTAAGATATCTC
GGATCGGAAAACCTAAAGGATGCATGTGTCGTACGTGCAAAGTTTGCACA
GCTCGCTGGATGGACCTCAATCGAGTCTGGAGGCGACGGCTCAAATACCC
CTCCATTGGGAAACTTTTGCGAACTTCTTCTAAAGATATGTCAGTTGGAA
AGAACGGCCGCACCTCTTTATCAAAAGATATGTCAGGTGTACCAAGTAGA
GCTGAGTAGGGATGAAAGTTTATCACCCATTCTCACTAAACTTGGCACCA
AGTACTTCGGTATCCAACCTCCTCAACCAAGTGGGATGGCCGGCATGATG
AGTTCCATGTTGCGCGGCATGATGGGCGCAAGCTGA

protein sequence of Ggra3645.t1

>Ggra3645.t1 ID=Ggra3645.t1|Name=Ggra3645.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=312bp
MASLKSLQKRYERSIEIEDYYGAEQACMMMHHRLTQGKNQAPGDIENALS
ILLKAAVTLLSKKQAQAGSALGLAAVRHYVEYKKKVADESVDALRKIADA
YDPTAGNDFEVRREKLRFLKAALAWSGREDCSGFTNGHATLNALTARAAA
EVENYELSQQLYIYSDAPEESAASLYKYASDHTNVDEHGLALTRVIVRYL
GSENLKDACVVRAKFAQLAGWTSIESGGDGSNTPPLGNFCELLLKICQLE
RTAAPLYQKICQVYQVELSRDESLSPILTKLGTKYFGIQPPQPSGMAGMM
SSMLRGMMGAS*

mRNA from alignment at tig00000850_pilon:714026..714961+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3645.t1 ID=Ggra3645.t1|Name=Ggra3645.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=936bp|location=Sequence derived from alignment at tig00000850_pilon:714026..714961+ (Gracilaria gracilis GNS1m male)
ATGGCCTCCTTGAAGAGTTTACAGAAACGGTATGAACGAAGCATCGAAAT
CGAAGACTATTACGGTGCGGAACAGGCTTGTATGATGATGCATCATCGCT
TAACGCAGGGCAAGAACCAGGCACCTGGTGACATCGAAAACGCGCTCAGT
ATTCTCCTTAAAGCCGCTGTTACTCTGTTGTCAAAGAAACAGGCACAAGC
TGGTTCTGCCCTTGGATTGGCCGCTGTGCGACACTACGTAGAGTACAAGA
AGAAGGTCGCAGATGAATCCGTTGACGCACTTCGCAAAATTGCCGACGCT
TATGATCCGACCGCGGGGAACGATTTTGAAGTTCGTCGCGAAAAGTTACG
ATTCTTGAAGGCCGCGTTAGCTTGGTCTGGAAGAGAGGACTGCTCGGGTT
TCACAAATGGTCATGCTACGCTCAACGCTTTGACTGCTCGAGCAGCTGCA
GAGGTTGAGAACTACGAGCTTTCTCAACAGCTGTACATCTATTCGGACGC
ACCAGAGGAAAGCGCTGCTTCCTTGTATAAGTATGCGTCAGACCACACAA
ATGTTGATGAGCATGGCTTGGCTCTAACGCGTGTTATCGTAAGATATCTC
GGATCGGAAAACCTAAAGGATGCATGTGTCGTACGTGCAAAGTTTGCACA
GCTCGCTGGATGGACCTCAATCGAGTCTGGAGGCGACGGCTCAAATACCC
CTCCATTGGGAAACTTTTGCGAACTTCTTCTAAAGATATGTCAGTTGGAA
AGAACGGCCGCACCTCTTTATCAAAAGATATGTCAGGTGTACCAAGTAGA
GCTGAGTAGGGATGAAAGTTTATCACCCATTCTCACTAAACTTGGCACCA
AGTACTTCGGTATCCAACCTCCTCAACCAAGTGGGATGGCCGGCATGATG
AGTTCCATGTTGCGCGGCATGATGGGCGCAAGCTGA

Coding sequence (CDS) from alignment at tig00000850_pilon:714026..714961+

>Ggra3645.t1 ID=Ggra3645.t1|Name=Ggra3645.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=936bp|location=Sequence derived from alignment at tig00000850_pilon:714026..714961+ (Gracilaria gracilis GNS1m male)
ATGGCCTCCTTGAAGAGTTTACAGAAACGGTATGAACGAAGCATCGAAAT
CGAAGACTATTACGGTGCGGAACAGGCTTGTATGATGATGCATCATCGCT
TAACGCAGGGCAAGAACCAGGCACCTGGTGACATCGAAAACGCGCTCAGT
ATTCTCCTTAAAGCCGCTGTTACTCTGTTGTCAAAGAAACAGGCACAAGC
TGGTTCTGCCCTTGGATTGGCCGCTGTGCGACACTACGTAGAGTACAAGA
AGAAGGTCGCAGATGAATCCGTTGACGCACTTCGCAAAATTGCCGACGCT
TATGATCCGACCGCGGGGAACGATTTTGAAGTTCGTCGCGAAAAGTTACG
ATTCTTGAAGGCCGCGTTAGCTTGGTCTGGAAGAGAGGACTGCTCGGGTT
TCACAAATGGTCATGCTACGCTCAACGCTTTGACTGCTCGAGCAGCTGCA
GAGGTTGAGAACTACGAGCTTTCTCAACAGCTGTACATCTATTCGGACGC
ACCAGAGGAAAGCGCTGCTTCCTTGTATAAGTATGCGTCAGACCACACAA
ATGTTGATGAGCATGGCTTGGCTCTAACGCGTGTTATCGTAAGATATCTC
GGATCGGAAAACCTAAAGGATGCATGTGTCGTACGTGCAAAGTTTGCACA
GCTCGCTGGATGGACCTCAATCGAGTCTGGAGGCGACGGCTCAAATACCC
CTCCATTGGGAAACTTTTGCGAACTTCTTCTAAAGATATGTCAGTTGGAA
AGAACGGCCGCACCTCTTTATCAAAAGATATGTCAGGTGTACCAAGTAGA
GCTGAGTAGGGATGAAAGTTTATCACCCATTCTCACTAAACTTGGCACCA
AGTACTTCGGTATCCAACCTCCTCAACCAAGTGGGATGGCCGGCATGATG
AGTTCCATGTTGCGCGGCATGATGGGCGCAAGCTGA