Ggra3644.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3644.t1
Unique NameGgra3644.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length604
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:709984..712354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705491.1
Preferred nameSTT3A
PFAMsSTT3
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00482
KEGG koko:K07151
KEGG ReactionR04216,R05976
KEGG Pathwayko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141
KEGG ModuleM00072
GOsGO:0003674,GO:0003824,GO:0004576,GO:0004579,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005886,GO:0006464,GO:0006486,GO:0006487,GO:0006807,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0008250,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009628,GO:0009651,GO:0009987,GO:0012505,GO:0016020,GO:0016740,GO:0016757,GO:0016758,GO:0018193,GO:0018196,GO:0018279,GO:0019538,GO:0031984,GO:0032991,GO:0034645,GO:0036211,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0043687,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0047484,GO:0048583,GO:0050789,GO:0050896,GO:0065007,GO:0070085,GO:0071704,GO:0071944,GO:0080134,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990234
Evalue5.55e-174
EggNOG OGsCOG1287@1|root,KOG2292@2759|Eukaryota
EC2.4.99.18
Descriptionoligosaccharyl transferase activity
COG categoryF
CAZyGT66
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3644Ggra3644Gracilaria gracilis GNS1m malegenetig00000850_pilon 709984..712354 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3644.t1Ggra3644.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 709984..712354 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3644.t1.stop1Ggra3644.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 709984..709986 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3644.t1.CDS1Ggra3644.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 709984..710102 -
Ggra3644.t1.CDS2Ggra3644.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000850_pilon 710552..712017 -
Ggra3644.t1.CDS3Ggra3644.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000850_pilon 712128..712354 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3644.t1.exon1Ggra3644.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 709984..710102 -
Ggra3644.t1.exon2Ggra3644.t1.exon2Gracilaria gracilis GNS1m maleexontig00000850_pilon 710552..712017 -
Ggra3644.t1.exon3Ggra3644.t1.exon3Gracilaria gracilis GNS1m maleexontig00000850_pilon 712128..712354 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3644.t1.intron1Ggra3644.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000850_pilon 710103..710551 -
Ggra3644.t1.intron2Ggra3644.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000850_pilon 712018..712127 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3644.t1.start1Ggra3644.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 712352..712354 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3644.t1 ID=Ggra3644.t1|Name=Ggra3644.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=604bp
MALSPAVDTVQISEDGPNPDTNDSPLPISRQKEAFLRTLTLGLTCLVSFS
IRLFSVLRYESIIHEFDPWFNFRSTRVLVEEGTYKFWNWFDSRSWYPLGR
IVGGTVYPGIMYTAAFMYNVLHTLGFQVNIRDVCVLTAPVFSALTALSAY
ALTKEASDTAAGIVAAAIVSIVPGYISRSVAGSYDNEGVSITAMIFCFYL
WTKSVNTGSLFWSGLATLSYLYMVACWGGYIFLINLIPVYVLVMLFSGRY
SHRLYVAYNTFYVLGTLLSMQIRFVGFNAVQTYEHLGAFGTFGLINLYCV
VTWVRSFTKPQVFRAFVRWLILFVLSILMLFVAICLALDSDGRMTGRIRQ
FLDPTYAINNIPIIASVSEHQPTAWGSYFFDLHLTVYLMPIGLYFCFKKL
SDANMFLVTYGTFAVYFSGVMVRIMLVLAPAASMLSAIGISETLKCCFRS
LQAADEGVELNIGGEERSRRRSPRQESEAIEKAGVRGGDQGKKSKKTIRM
RKSKASKAEAATEDLQPKVEETRAQSSRQQVIPRAVALFMIAGSFSLLYQ
YVKHAIWATSEAYSIADVPLVLLPVRGRWRRDGIRSDEEDAGSGRGVDPA
QVL*
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spliced messenger RNA

>Ggra3644.t1 ID=Ggra3644.t1|Name=Ggra3644.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1812bp|location=Sequence derived from alignment at tig00000850_pilon:709984..712354- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTGTCACCCGCGGTTGATACCGTGCAAATCAGTGAAGATGGACC
AAATCCAGACACAAACGATTCTCCATTGCCCATCTCCAGGCAGAAGGAGG
CCTTTCTAAGAACCCTTACGCTTGGGCTCACATGTCTGGTATCCTTTTCG
ATTCGATTGTTTTCTGTTCTGCGATATGAGAGCATCATCCACGAATTTGA
TCCTTGGTTCAACTTTCGAAGCACAAGAGTTCTTGTAGAAGAAGGAACGT
ACAAGTTCTGGAACTGGTTTGATTCAAGATCATGGTACCCTCTAGGTCGA
ATCGTTGGCGGTACAGTTTATCCCGGCATCATGTACACTGCCGCGTTCAT
GTACAATGTGTTACACACTCTTGGTTTTCAGGTTAACATTAGAGACGTTT
GCGTGCTGACAGCTCCTGTGTTCTCTGCGCTGACTGCCCTATCTGCCTAT
GCGCTCACTAAAGAAGCGTCTGACACCGCCGCGGGAATTGTCGCGGCTGC
CATTGTTTCCATTGTGCCTGGGTATATCTCTCGTTCTGTGGCCGGGTCAT
ATGATAATGAAGGCGTTTCCATCACGGCCATGATATTCTGCTTCTACTTG
TGGACGAAGTCCGTCAATACCGGATCGTTGTTCTGGTCTGGGTTGGCTAC
TTTATCGTATCTGTACATGGTTGCTTGTTGGGGTGGGTATATTTTCCTGA
TTAACTTGATTCCTGTGTATGTTCTAGTGATGCTCTTCTCTGGTCGTTAT
TCTCATCGGCTTTATGTTGCATATAATACGTTTTACGTTCTTGGAACTCT
ACTTTCTATGCAGATTCGATTTGTGGGCTTCAATGCAGTGCAAACGTACG
AGCATCTTGGTGCCTTTGGAACTTTTGGACTCATCAATCTGTACTGCGTT
GTAACTTGGGTTCGAAGCTTCACAAAGCCACAAGTGTTCCGAGCTTTTGT
TCGTTGGCTCATACTTTTCGTCTTATCAATACTGATGCTCTTCGTGGCAA
TCTGCCTTGCGCTGGACAGTGACGGCCGTATGACTGGCAGAATTCGCCAG
TTCTTGGATCCGACTTATGCCATTAACAATATTCCCATCATTGCGTCAGT
TTCGGAGCATCAACCCACCGCATGGGGTTCTTACTTTTTCGATCTCCATC
TTACAGTGTACCTTATGCCGATTGGGTTGTACTTTTGCTTCAAGAAATTG
TCTGATGCGAACATGTTTTTGGTGACTTATGGCACGTTTGCTGTGTACTT
CTCTGGGGTTATGGTGAGAATCATGCTTGTGCTTGCGCCAGCAGCTTCAA
TGTTGAGTGCTATTGGAATCTCTGAGACGTTGAAGTGCTGCTTCAGATCG
TTGCAAGCTGCGGACGAAGGCGTGGAATTGAACATTGGTGGCGAAGAGAG
AAGCCGTCGGCGTTCCCCTAGACAAGAGAGCGAGGCAATTGAGAAGGCGG
GAGTGCGTGGTGGTGACCAGGGGAAGAAGTCTAAGAAAACGATTCGTATG
AGAAAGTCAAAGGCAAGCAAAGCCGAAGCTGCGACAGAGGATTTGCAGCC
CAAAGTTGAGGAAACGCGTGCGCAATCATCGCGACAACAAGTGATCCCGA
GAGCGGTGGCGCTTTTCATGATTGCGGGTTCATTCTCTCTGCTGTACCAG
TACGTGAAACATGCGATATGGGCAACGTCGGAGGCGTACAGCATCGCTGA
TGTTCCACTTGTGCTACTACCGGTTCGCGGACGCTGGCGACGGGACGGCA
TTCGATCGGATGAGGAAGACGCGGGTAGCGGACGCGGCGTCGATCCGGCT
CAAGTACTTTGA
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protein sequence of Ggra3644.t1

>Ggra3644.t1 ID=Ggra3644.t1|Name=Ggra3644.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=604bp
MALSPAVDTVQISEDGPNPDTNDSPLPISRQKEAFLRTLTLGLTCLVSFS
IRLFSVLRYESIIHEFDPWFNFRSTRVLVEEGTYKFWNWFDSRSWYPLGR
IVGGTVYPGIMYTAAFMYNVLHTLGFQVNIRDVCVLTAPVFSALTALSAY
ALTKEASDTAAGIVAAAIVSIVPGYISRSVAGSYDNEGVSITAMIFCFYL
WTKSVNTGSLFWSGLATLSYLYMVACWGGYIFLINLIPVYVLVMLFSGRY
SHRLYVAYNTFYVLGTLLSMQIRFVGFNAVQTYEHLGAFGTFGLINLYCV
VTWVRSFTKPQVFRAFVRWLILFVLSILMLFVAICLALDSDGRMTGRIRQ
FLDPTYAINNIPIIASVSEHQPTAWGSYFFDLHLTVYLMPIGLYFCFKKL
SDANMFLVTYGTFAVYFSGVMVRIMLVLAPAASMLSAIGISETLKCCFRS
LQAADEGVELNIGGEERSRRRSPRQESEAIEKAGVRGGDQGKKSKKTIRM
RKSKASKAEAATEDLQPKVEETRAQSSRQQVIPRAVALFMIAGSFSLLYQ
YVKHAIWATSEAYSIADVPLVLLPVRGRWRRDGIRSDEEDAGSGRGVDPA
QVL*
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mRNA from alignment at tig00000850_pilon:709984..712354-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3644.t1 ID=Ggra3644.t1|Name=Ggra3644.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2371bp|location=Sequence derived from alignment at tig00000850_pilon:709984..712354- (Gracilaria gracilis GNS1m male)
ATGGCGCTGTCACCCGCGGTTGATACCGTGCAAATCAGTGAAGATGGACC
AAATCCAGACACAAACGATTCTCCATTGCCCATCTCCAGGCAGAAGGAGG
CCTTTCTAAGAACCCTTACGCTTGGGCTCACATGTCTGGTATCCTTTTCG
ATTCGATTGTTTTCTGTTCTGCGATATGAGAGCATCATCCACGAATTTGA
TCCTTGGTTCAACTTTCGAAGCACAAGGTAAGTTCCACGCGTCTCCGAGC
GATATACTTTGGTGAATGCATTGATCCGATACACAATTCATATGGATGTT
AACCAATTATTGTTTGTTTCGTCATATTTGTTTGCAGAGTTCTTGTAGAA
GAAGGAACGTACAAGTTCTGGAACTGGTTTGATTCAAGATCATGGTACCC
TCTAGGTCGAATCGTTGGCGGTACAGTTTATCCCGGCATCATGTACACTG
CCGCGTTCATGTACAATGTGTTACACACTCTTGGTTTTCAGGTTAACATT
AGAGACGTTTGCGTGCTGACAGCTCCTGTGTTCTCTGCGCTGACTGCCCT
ATCTGCCTATGCGCTCACTAAAGAAGCGTCTGACACCGCCGCGGGAATTG
TCGCGGCTGCCATTGTTTCCATTGTGCCTGGGTATATCTCTCGTTCTGTG
GCCGGGTCATATGATAATGAAGGCGTTTCCATCACGGCCATGATATTCTG
CTTCTACTTGTGGACGAAGTCCGTCAATACCGGATCGTTGTTCTGGTCTG
GGTTGGCTACTTTATCGTATCTGTACATGGTTGCTTGTTGGGGTGGGTAT
ATTTTCCTGATTAACTTGATTCCTGTGTATGTTCTAGTGATGCTCTTCTC
TGGTCGTTATTCTCATCGGCTTTATGTTGCATATAATACGTTTTACGTTC
TTGGAACTCTACTTTCTATGCAGATTCGATTTGTGGGCTTCAATGCAGTG
CAAACGTACGAGCATCTTGGTGCCTTTGGAACTTTTGGACTCATCAATCT
GTACTGCGTTGTAACTTGGGTTCGAAGCTTCACAAAGCCACAAGTGTTCC
GAGCTTTTGTTCGTTGGCTCATACTTTTCGTCTTATCAATACTGATGCTC
TTCGTGGCAATCTGCCTTGCGCTGGACAGTGACGGCCGTATGACTGGCAG
AATTCGCCAGTTCTTGGATCCGACTTATGCCATTAACAATATTCCCATCA
TTGCGTCAGTTTCGGAGCATCAACCCACCGCATGGGGTTCTTACTTTTTC
GATCTCCATCTTACAGTGTACCTTATGCCGATTGGGTTGTACTTTTGCTT
CAAGAAATTGTCTGATGCGAACATGTTTTTGGTGACTTATGGCACGTTTG
CTGTGTACTTCTCTGGGGTTATGGTGAGAATCATGCTTGTGCTTGCGCCA
GCAGCTTCAATGTTGAGTGCTATTGGAATCTCTGAGACGTTGAAGTGCTG
CTTCAGATCGTTGCAAGCTGCGGACGAAGGCGTGGAATTGAACATTGGTG
GCGAAGAGAGAAGCCGTCGGCGTTCCCCTAGACAAGAGAGCGAGGCAATT
GAGAAGGCGGGAGTGCGTGGTGGTGACCAGGGGAAGAAGTCTAAGAAAAC
GATTCGTATGAGAAAGTCAAAGGCAAGCAAAGCCGAAGCTGCGACAGAGG
ATTTGCAGCCCAAAGTTGAGGAAACGCGTGCGCAATCATCGCGACAACAA
GTGATCCCGAGAGCGGTGGCGCTTTTCATGATTGCGGGTTCATTCTCTCT
GCTGTACCAGTACGTGAAACATGCGATATGGGCAACGTCGGAGGCGTACA
GCAGTCCGTCTATTGTGCTGAGTGGTCGCGGTGCAAATGGGGACAGAATA
TTCTTTGATGACTACCGCGAGGCGTACTACTGGCTGCGGCAGAACACGGC
TGAGGACGCCAAGGTGATGTCCTGGTGGGATTATGGGTACCAGATTTCAG
GGATGGCCAACCGCACGGTTATTGTGGACAACAACACGTGGAATAACACG
CACATTGCAACTGTCGGAAAGGCAATGAACTCTCCGGAAGACGTTTCGTA
CAAGATTGTTCGCAAGTTGGACGTGGATTACGTGCTGGTGGTGTTTGGCG
GAATGATCGAATACAGTGGCGACGACATCAACAAGTTCTTGTGGATGGTG
AGAATCGGGGGATCGGTAGACAAGACAGTGCGGGAGAAGGACTATCTGTC
GTCGTACGGGGCGTACACTGTGGACCAGACTGCTGGACCGGCGCTGCGTA
AGTCGCTGATGTTCCACTTGTGCTACTACCGGTTCGCGGACGCTGGCGAC
GGGACGGCATTCGATCGGATGAGGAAGACGCGGGTAGCGGACGCGGCGTC
GATCCGGCTCAAGTACTTTGA
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Coding sequence (CDS) from alignment at tig00000850_pilon:709984..712354-

>Ggra3644.t1 ID=Ggra3644.t1|Name=Ggra3644.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1812bp|location=Sequence derived from alignment at tig00000850_pilon:709984..712354- (Gracilaria gracilis GNS1m male)
ATGGCGCTGTCACCCGCGGTTGATACCGTGCAAATCAGTGAAGATGGACC
AAATCCAGACACAAACGATTCTCCATTGCCCATCTCCAGGCAGAAGGAGG
CCTTTCTAAGAACCCTTACGCTTGGGCTCACATGTCTGGTATCCTTTTCG
ATTCGATTGTTTTCTGTTCTGCGATATGAGAGCATCATCCACGAATTTGA
TCCTTGGTTCAACTTTCGAAGCACAAGAGTTCTTGTAGAAGAAGGAACGT
ACAAGTTCTGGAACTGGTTTGATTCAAGATCATGGTACCCTCTAGGTCGA
ATCGTTGGCGGTACAGTTTATCCCGGCATCATGTACACTGCCGCGTTCAT
GTACAATGTGTTACACACTCTTGGTTTTCAGGTTAACATTAGAGACGTTT
GCGTGCTGACAGCTCCTGTGTTCTCTGCGCTGACTGCCCTATCTGCCTAT
GCGCTCACTAAAGAAGCGTCTGACACCGCCGCGGGAATTGTCGCGGCTGC
CATTGTTTCCATTGTGCCTGGGTATATCTCTCGTTCTGTGGCCGGGTCAT
ATGATAATGAAGGCGTTTCCATCACGGCCATGATATTCTGCTTCTACTTG
TGGACGAAGTCCGTCAATACCGGATCGTTGTTCTGGTCTGGGTTGGCTAC
TTTATCGTATCTGTACATGGTTGCTTGTTGGGGTGGGTATATTTTCCTGA
TTAACTTGATTCCTGTGTATGTTCTAGTGATGCTCTTCTCTGGTCGTTAT
TCTCATCGGCTTTATGTTGCATATAATACGTTTTACGTTCTTGGAACTCT
ACTTTCTATGCAGATTCGATTTGTGGGCTTCAATGCAGTGCAAACGTACG
AGCATCTTGGTGCCTTTGGAACTTTTGGACTCATCAATCTGTACTGCGTT
GTAACTTGGGTTCGAAGCTTCACAAAGCCACAAGTGTTCCGAGCTTTTGT
TCGTTGGCTCATACTTTTCGTCTTATCAATACTGATGCTCTTCGTGGCAA
TCTGCCTTGCGCTGGACAGTGACGGCCGTATGACTGGCAGAATTCGCCAG
TTCTTGGATCCGACTTATGCCATTAACAATATTCCCATCATTGCGTCAGT
TTCGGAGCATCAACCCACCGCATGGGGTTCTTACTTTTTCGATCTCCATC
TTACAGTGTACCTTATGCCGATTGGGTTGTACTTTTGCTTCAAGAAATTG
TCTGATGCGAACATGTTTTTGGTGACTTATGGCACGTTTGCTGTGTACTT
CTCTGGGGTTATGGTGAGAATCATGCTTGTGCTTGCGCCAGCAGCTTCAA
TGTTGAGTGCTATTGGAATCTCTGAGACGTTGAAGTGCTGCTTCAGATCG
TTGCAAGCTGCGGACGAAGGCGTGGAATTGAACATTGGTGGCGAAGAGAG
AAGCCGTCGGCGTTCCCCTAGACAAGAGAGCGAGGCAATTGAGAAGGCGG
GAGTGCGTGGTGGTGACCAGGGGAAGAAGTCTAAGAAAACGATTCGTATG
AGAAAGTCAAAGGCAAGCAAAGCCGAAGCTGCGACAGAGGATTTGCAGCC
CAAAGTTGAGGAAACGCGTGCGCAATCATCGCGACAACAAGTGATCCCGA
GAGCGGTGGCGCTTTTCATGATTGCGGGTTCATTCTCTCTGCTGTACCAG
TACGTGAAACATGCGATATGGGCAACGTCGGAGGCGTACAGCATCGCTGA
TGTTCCACTTGTGCTACTACCGGTTCGCGGACGCTGGCGACGGGACGGCA
TTCGATCGGATGAGGAAGACGCGGGTAGCGGACGCGGCGTCGATCCGGCT
CAAGTACTTTGA
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