Ggra3643.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3643.t1
Unique NameGgra3643.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length249
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:708775..709521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3643Ggra3643Gracilaria gracilis GNS1m malegenetig00000850_pilon 708775..709521 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3643.t1.start1Ggra3643.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 708775..708777 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3643.t1.CDS1Ggra3643.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 708775..709521 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3643.t1.exon1Ggra3643.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 708775..709521 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3643.t1.stop1Ggra3643.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 709519..709521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3643.t1Ggra3643.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 708775..709521 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3643.t1 ID=Ggra3643.t1|Name=Ggra3643.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=249bp
MSERLHYFTEATTTPVSFDCDASEIDSDLDDLRRPQTDQDRLKIHTRQLQ
LWSDEARRRLGASLPPSSPPSSSPRRNTFSSPANNSQRTSACTAATTDRH
QSNLSERARTPRANAAAVRRSHSAKNLRIRVTPSSSSRSLLSDIESEGGG
GGGGAVAAATARSAPHSPREPKSLPPMRDEKLSLGEAPLPAALVLTPSSV
QPFASGEHSQLQEREHSDDSESAPLSRRQSFHRRIKRLSLRRWLRRRA*
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spliced messenger RNA

>Ggra3643.t1 ID=Ggra3643.t1|Name=Ggra3643.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=747bp|location=Sequence derived from alignment at tig00000850_pilon:708775..709521+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGAACGCCTACACTACTTCACGGAGGCCACCACCACTCCGGTCTC
CTTCGACTGCGACGCCTCTGAAATCGACTCCGACCTCGACGATCTTCGCC
GCCCGCAGACCGATCAGGACCGCCTCAAGATCCACACGCGCCAGCTGCAA
CTCTGGTCCGACGAGGCGCGCCGTCGTCTCGGCGCCTCTCTTCCGCCCTC
CTCGCCACCGTCCTCCTCCCCGCGCCGCAACACCTTCTCCTCACCCGCGA
ACAACTCGCAGCGCACGTCGGCGTGCACTGCCGCCACCACCGATCGCCAC
CAATCCAACCTCTCcgagcgcgcgcgcacgccgcgcgcaaacgccgccgc
cgtgcgtcgctcgcactcggcgAAGAACCTGCGCATCCGCGTCACGCCGT
CGTCGTCGTCGCGCTCGCTGTTGTCCGACATTGAGTCGGAGggcggtggc
ggcggcggaggcgctgtggctgctgctaccgcgcggtctgcgCCACACTC
GCCGCGCGAGCCGAAGAGCTTACCGCCCATGCGCGACGAGAAGCTCTCGT
TGGGAGAGGCGCCTTTGCCGGCCGCGCTCGTGCTCACGCCGTCTAGCGTG
CAGCCCTTTGCGTCGGGCGAGCACTCGCAACTACAAGAGCGGGAGCATTC
GGACGATTCTGAGTCGGCGCCCTTGTCCAGGCGACAGAGCTTCCACCGCC
GCATCAAACGGCTGTCGTTGAGGCGGTGGCTAAGACGCCGCGCATGA
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protein sequence of Ggra3643.t1

>Ggra3643.t1 ID=Ggra3643.t1|Name=Ggra3643.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=249bp
MSERLHYFTEATTTPVSFDCDASEIDSDLDDLRRPQTDQDRLKIHTRQLQ
LWSDEARRRLGASLPPSSPPSSSPRRNTFSSPANNSQRTSACTAATTDRH
QSNLSERARTPRANAAAVRRSHSAKNLRIRVTPSSSSRSLLSDIESEGGG
GGGGAVAAATARSAPHSPREPKSLPPMRDEKLSLGEAPLPAALVLTPSSV
QPFASGEHSQLQEREHSDDSESAPLSRRQSFHRRIKRLSLRRWLRRRA*
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mRNA from alignment at tig00000850_pilon:708775..709521+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3643.t1 ID=Ggra3643.t1|Name=Ggra3643.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=747bp|location=Sequence derived from alignment at tig00000850_pilon:708775..709521+ (Gracilaria gracilis GNS1m male)
ATGTCCGAACGCCTACACTACTTCACGGAGGCCACCACCACTCCGGTCTC
CTTCGACTGCGACGCCTCTGAAATCGACTCCGACCTCGACGATCTTCGCC
GCCCGCAGACCGATCAGGACCGCCTCAAGATCCACACGCGCCAGCTGCAA
CTCTGGTCCGACGAGGCGCGCCGTCGTCTCGGCGCCTCTCTTCCGCCCTC
CTCGCCACCGTCCTCCTCCCCGCGCCGCAACACCTTCTCCTCACCCGCGA
ACAACTCGCAGCGCACGTCGGCGTGCACTGCCGCCACCACCGATCGCCAC
CAATCCAACCTCTCcgagcgcgcgcgcacgccgcgcgcaaacgccgccgc
cgtgcgtcgctcgcactcggcgAAGAACCTGCGCATCCGCGTCACGCCGT
CGTCGTCGTCGCGCTCGCTGTTGTCCGACATTGAGTCGGAGggcggtggc
ggcggcggaggcgctgtggctgctgctaccgcgcggtctgcgCCACACTC
GCCGCGCGAGCCGAAGAGCTTACCGCCCATGCGCGACGAGAAGCTCTCGT
TGGGAGAGGCGCCTTTGCCGGCCGCGCTCGTGCTCACGCCGTCTAGCGTG
CAGCCCTTTGCGTCGGGCGAGCACTCGCAACTACAAGAGCGGGAGCATTC
GGACGATTCTGAGTCGGCGCCCTTGTCCAGGCGACAGAGCTTCCACCGCC
GCATCAAACGGCTGTCGTTGAGGCGGTGGCTAAGACGCCGCGCATGA
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Coding sequence (CDS) from alignment at tig00000850_pilon:708775..709521+

>Ggra3643.t1 ID=Ggra3643.t1|Name=Ggra3643.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=747bp|location=Sequence derived from alignment at tig00000850_pilon:708775..709521+ (Gracilaria gracilis GNS1m male)
ATGTCCGAACGCCTACACTACTTCACGGAGGCCACCACCACTCCGGTCTC
CTTCGACTGCGACGCCTCTGAAATCGACTCCGACCTCGACGATCTTCGCC
GCCCGCAGACCGATCAGGACCGCCTCAAGATCCACACGCGCCAGCTGCAA
CTCTGGTCCGACGAGGCGCGCCGTCGTCTCGGCGCCTCTCTTCCGCCCTC
CTCGCCACCGTCCTCCTCCCCGCGCCGCAACACCTTCTCCTCACCCGCGA
ACAACTCGCAGCGCACGTCGGCGTGCACTGCCGCCACCACCGATCGCCAC
CAATCCAACCTCTCcgagcgcgcgcgcacgccgcgcgcaaacgccgccgc
cgtgcgtcgctcgcactcggcgAAGAACCTGCGCATCCGCGTCACGCCGT
CGTCGTCGTCGCGCTCGCTGTTGTCCGACATTGAGTCGGAGggcggtggc
ggcggcggaggcgctgtggctgctgctaccgcgcggtctgcgCCACACTC
GCCGCGCGAGCCGAAGAGCTTACCGCCCATGCGCGACGAGAAGCTCTCGT
TGGGAGAGGCGCCTTTGCCGGCCGCGCTCGTGCTCACGCCGTCTAGCGTG
CAGCCCTTTGCGTCGGGCGAGCACTCGCAACTACAAGAGCGGGAGCATTC
GGACGATTCTGAGTCGGCGCCCTTGTCCAGGCGACAGAGCTTCCACCGCC
GCATCAAACGGCTGTCGTTGAGGCGGTGGCTAAGACGCCGCGCATGA
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