Ggra3642.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3642.t1
Unique Name	Ggra3642.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	716

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000850_pilon	contig	tig00000850_pilon:704198..706345 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	646529.Desaci_2494
PFAMs	Cellulose_synt,Glycos_transf_2,PilZ
Max annot lvl	186801\|Clostridia
KEGG rclass	RC00005
KEGG ko	ko:K00694
KEGG TC	4.D.3.1.2,4.D.3.1.5,4.D.3.1.6
KEGG Reaction	R02889
KEGG Pathway	ko00500,ko01100,ko02026,map00500,map01100,map02026
Evalue	1.85e-46
EggNOG OGs	COG1215@1\|root,COG1215@2\|Bacteria,1TSD3@1239\|Firmicutes,248YQ@186801\|Clostridia,2644S@186807\|Peptococcaceae
EC	2.4.1.12
Description	Glycosyl transferase family group 2
COG category	M
CAZy	GT2
BRITE	ko00000,ko00001,ko01000,ko01003,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3642	Ggra3642	Gracilaria gracilis GNS1m male	gene	tig00000850_pilon 704198..706345 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3642.t1.stop1	Ggra3642.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000850_pilon 704198..704200 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3642.t1.CDS1	Ggra3642.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000850_pilon 704198..706345 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3642.t1.exon1	Ggra3642.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000850_pilon 704198..706345 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3642.t1.start1	Ggra3642.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000850_pilon 706343..706345 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3642.t1	Ggra3642.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000850_pilon 704198..706345 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000850_pilon:704198..706345-
coding sequence from alignment at tig00000850_pilon:704198..706345-

mRNA sequence

>Ggra3642.t1 ID=Ggra3642.t1|Name=Ggra3642.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=716bp
MQSRLRRIFYVLQVLATIAYLQFRARRTISIFDRSRTPAYVAYQIFFFAL
ECICVIPILFQMLQVWNVLRRNCVDFKRIPRHLIKPYFLRSPNYSSRPEY
SMYPTVAVYIPCYNEDVNLVRETVLGALRIDYPQGLFSVYLCDDGQDPQK
EAMISNLKLRHDNLCYVTRPEHQHAKAGNLNYALKRTESDLVITLDADFI
PRPNIIQRLMPYYFVWNPDSSLYEFNETLAVVQTPQHFRNLSPHDSDPLD
QRSLLFFDVVQHGKDWFNASTMVGTNNLISKAALKEAEYYPYYSVTEDSA
MSLQFHSLGYRTYYVNESLATGLATTSLRSNLRQRARWMKGDWQILFSKN
GLFAARGLTMIQKLMYFNMGLGRLMSFTFTFFDIASIALLLGGVTPLDVQ
YPLVFIIYLAPVLIFGTLAHFLFTSGGKGLNKSAAGNLTFETMFRYSTMK
GLFEYIFNGENIVFKVTDKSDPTRKTKQQENSENTDDSQSTSNNGDEDSM
LDSEVAFSSSAREQCERTSKSISNGEKLESESVDQYVEMVVNQQQSQGGA
GTLSFKSKTDKNREENNYHSKEVWKNLERIWFNVLAAIVLIVSVVWGIAR
PPTVDTTIDGNRISIANGDLFPMAMAIGFTAASALPHLLVVFLCFRPYTS
GWMLTDVVHGRCDQFAAHHSSGKLYVPWSYINLVTIGRMIFIFGSITFVL
VYTLLSSDPIQVGLP*

spliced messenger RNA

>Ggra3642.t1 ID=Ggra3642.t1|Name=Ggra3642.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2148bp|location=Sequence derived from alignment at tig00000850_pilon:704198..706345- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAATCACGGCTTCGACGTATATTTTATGTGTTACAAGTTCTCGCGAC
GATCGCATATCTTCAATTCCGAGCCCGAAGAACGATTTCCATTTTTGATC
GCTCTCGAACCCCAGCCTACGTTGCGTATCAAATCTTTTTCTTTGCGCTG
GAATGTATATGTGTGATTCCGATTTTGTTCCAAATGCTTCAAGTATGGAA
TGTTCTCAGACGCAACTGTGTCGATTTTAAACGAATTCCGCGGCACTTGA
TCAAGCCGTACTTTCTACGCTCCCCAAACTACAGTTCAAGACCCGAATAC
TCCATGTACCCAACTGTGGCCGTGTACATCCCATGCTACAATGAGGATGT
TAATCTCGTGAGGGAGACAGTGCTTGGCGCTTTGAGAATCGATTACCCTC
AAGGTCTTTTCAGTGTATACCTCTGCGACGACGGACAAGACCCGCAGAAG
GAAGCGATGATCTCTAACCTAAAACTTCGACACGATAACTTGTGTTATGT
CACTCGACCGGAACACCAGCACGCTAAGGCCGGAAACCTCAACTACGCAT
TGAAACGGACTGAAAGTGATCTTGTGATCACTTTGGATGCTGACTTCATC
CCAAGACCAAACATCATTCAACGTCTCATGCCGTACTATTTTGTATGGAA
CCCAGACTCCAGTCTGTACGAGTTTAATGAGACTCTAGCCGTTGTGCAGA
CTCCGCAGCATTTTCGCAACCTCTCTCCCCACGACAGCGATCCTTTGGAT
CAGCGTTCTTTGTTGTTTTTCGATGTAGTACAGCACGGGAAAGATTGGTT
CAACGCCTCAACCATGGTAGGAACTAACAATCTCATCAGCAAAGCAGCTC
TTAAAGAAGCAGAGTACTATCCGTACTATTCCGTCACAGAAGACTCGGCT
ATGTCGCTCCAATTCCACAGCCTCGGATACCGTACCTACTATGTGAATGA
ATCGCTTGCAACTGGGCTGGCTACAACATCGCTTCGTAGCAATTTGCGGC
AACGTGCCAGATGGATGAAAGGTGATTGGCAGATCTTGTTTTCTAAGAAT
GGACTATTTGCTGCCCGGGGTTTGACGATGATTCAAAAACTCATGTACTT
TAACATGGGACTCGGAAGACTGATGTCCTTCACTTTCACGTTCTTTGACA
TAGCTTCAATCGCACTTCTCTTAGGGGGTGTCACTCCACTTGACGTACAG
TATCCATTGGTTTTCATAATCTACTTGGCACCTGTTCTTATCTTTGGAAC
TCTGGCACATTTCTTGTTCACCTCCGGAGGCAAGGGACTTAACAAATCGG
CGGCTGGTAATCTCACATTTGAGACTATGTTCAGATACAGCACTATGAAA
GGCCTTTTTGAGTACATATTCAACGGAGAGAACATCGTTTTCAAGGTTAC
GGACAAGTCAGATCCCACGCGGAAGACAAAGCAGCAAGAAAATAGTGAAA
ACACGGATGATAGCCAGAGTACTTCCAATAATGGGGATGAAGATAGTATG
CTTGATTCCGAAGTGGCATTCTCTTCATCAGCCCGTGAACAATGTGAGCG
AACATCCAAATCAATCTCGAATGGTGAAAAGTTAGAAAGTGAATCGGTAG
ATCAATACGTCGAAATGGTTGTGAATCAACAACAAAGTCAAGGCGGGGCT
GGAACTTTGTCTTTTAAAAGTAAGACAGATAAGAATCGCGAAGAAAACAA
CTACCACAGTAAGGAAGTTTGGAAGAATCTGGAACGAATCTGGTTCAACG
TTTTGGCTGCAATTGTGCTGATTGTTTCAGTGGTATGGGGAATTGCACGA
CCTCCCACCGTAGACACGACGATCGATGGAAATCGTATATCAATTGCAAA
TGGAGATTTGTTTCCAATGGCAATGGCCATTGGGTTTACTGCTGCCAGCG
CGTTACCCCATTTACTGGTTGTTTTTTTGTGCTTCCGACCATATACCTCT
GGATGGATGTTGACCGACGTTGTGCATGGAAGGTGTGATCAGTTTGCTGC
ACACCATTCAAGTGGCAAGTTATATGTGCCTTGGTCATATATCAATTTGG
TTACCATAGGACGCATGATCTTTATTTTTGGATCGATAACATTTGTTCTA
GTTTACACTCTTTTGTCCTCTGATCCTATTCAAGTTGGGCTGCCCTAG

protein sequence of Ggra3642.t1

>Ggra3642.t1 ID=Ggra3642.t1|Name=Ggra3642.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=716bp
MQSRLRRIFYVLQVLATIAYLQFRARRTISIFDRSRTPAYVAYQIFFFAL
ECICVIPILFQMLQVWNVLRRNCVDFKRIPRHLIKPYFLRSPNYSSRPEY
SMYPTVAVYIPCYNEDVNLVRETVLGALRIDYPQGLFSVYLCDDGQDPQK
EAMISNLKLRHDNLCYVTRPEHQHAKAGNLNYALKRTESDLVITLDADFI
PRPNIIQRLMPYYFVWNPDSSLYEFNETLAVVQTPQHFRNLSPHDSDPLD
QRSLLFFDVVQHGKDWFNASTMVGTNNLISKAALKEAEYYPYYSVTEDSA
MSLQFHSLGYRTYYVNESLATGLATTSLRSNLRQRARWMKGDWQILFSKN
GLFAARGLTMIQKLMYFNMGLGRLMSFTFTFFDIASIALLLGGVTPLDVQ
YPLVFIIYLAPVLIFGTLAHFLFTSGGKGLNKSAAGNLTFETMFRYSTMK
GLFEYIFNGENIVFKVTDKSDPTRKTKQQENSENTDDSQSTSNNGDEDSM
LDSEVAFSSSAREQCERTSKSISNGEKLESESVDQYVEMVVNQQQSQGGA
GTLSFKSKTDKNREENNYHSKEVWKNLERIWFNVLAAIVLIVSVVWGIAR
PPTVDTTIDGNRISIANGDLFPMAMAIGFTAASALPHLLVVFLCFRPYTS
GWMLTDVVHGRCDQFAAHHSSGKLYVPWSYINLVTIGRMIFIFGSITFVL
VYTLLSSDPIQVGLP*

mRNA from alignment at tig00000850_pilon:704198..706345-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3642.t1 ID=Ggra3642.t1|Name=Ggra3642.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2148bp|location=Sequence derived from alignment at tig00000850_pilon:704198..706345- (Gracilaria gracilis GNS1m male)
ATGCAATCACGGCTTCGACGTATATTTTATGTGTTACAAGTTCTCGCGAC
GATCGCATATCTTCAATTCCGAGCCCGAAGAACGATTTCCATTTTTGATC
GCTCTCGAACCCCAGCCTACGTTGCGTATCAAATCTTTTTCTTTGCGCTG
GAATGTATATGTGTGATTCCGATTTTGTTCCAAATGCTTCAAGTATGGAA
TGTTCTCAGACGCAACTGTGTCGATTTTAAACGAATTCCGCGGCACTTGA
TCAAGCCGTACTTTCTACGCTCCCCAAACTACAGTTCAAGACCCGAATAC
TCCATGTACCCAACTGTGGCCGTGTACATCCCATGCTACAATGAGGATGT
TAATCTCGTGAGGGAGACAGTGCTTGGCGCTTTGAGAATCGATTACCCTC
AAGGTCTTTTCAGTGTATACCTCTGCGACGACGGACAAGACCCGCAGAAG
GAAGCGATGATCTCTAACCTAAAACTTCGACACGATAACTTGTGTTATGT
CACTCGACCGGAACACCAGCACGCTAAGGCCGGAAACCTCAACTACGCAT
TGAAACGGACTGAAAGTGATCTTGTGATCACTTTGGATGCTGACTTCATC
CCAAGACCAAACATCATTCAACGTCTCATGCCGTACTATTTTGTATGGAA
CCCAGACTCCAGTCTGTACGAGTTTAATGAGACTCTAGCCGTTGTGCAGA
CTCCGCAGCATTTTCGCAACCTCTCTCCCCACGACAGCGATCCTTTGGAT
CAGCGTTCTTTGTTGTTTTTCGATGTAGTACAGCACGGGAAAGATTGGTT
CAACGCCTCAACCATGGTAGGAACTAACAATCTCATCAGCAAAGCAGCTC
TTAAAGAAGCAGAGTACTATCCGTACTATTCCGTCACAGAAGACTCGGCT
ATGTCGCTCCAATTCCACAGCCTCGGATACCGTACCTACTATGTGAATGA
ATCGCTTGCAACTGGGCTGGCTACAACATCGCTTCGTAGCAATTTGCGGC
AACGTGCCAGATGGATGAAAGGTGATTGGCAGATCTTGTTTTCTAAGAAT
GGACTATTTGCTGCCCGGGGTTTGACGATGATTCAAAAACTCATGTACTT
TAACATGGGACTCGGAAGACTGATGTCCTTCACTTTCACGTTCTTTGACA
TAGCTTCAATCGCACTTCTCTTAGGGGGTGTCACTCCACTTGACGTACAG
TATCCATTGGTTTTCATAATCTACTTGGCACCTGTTCTTATCTTTGGAAC
TCTGGCACATTTCTTGTTCACCTCCGGAGGCAAGGGACTTAACAAATCGG
CGGCTGGTAATCTCACATTTGAGACTATGTTCAGATACAGCACTATGAAA
GGCCTTTTTGAGTACATATTCAACGGAGAGAACATCGTTTTCAAGGTTAC
GGACAAGTCAGATCCCACGCGGAAGACAAAGCAGCAAGAAAATAGTGAAA
ACACGGATGATAGCCAGAGTACTTCCAATAATGGGGATGAAGATAGTATG
CTTGATTCCGAAGTGGCATTCTCTTCATCAGCCCGTGAACAATGTGAGCG
AACATCCAAATCAATCTCGAATGGTGAAAAGTTAGAAAGTGAATCGGTAG
ATCAATACGTCGAAATGGTTGTGAATCAACAACAAAGTCAAGGCGGGGCT
GGAACTTTGTCTTTTAAAAGTAAGACAGATAAGAATCGCGAAGAAAACAA
CTACCACAGTAAGGAAGTTTGGAAGAATCTGGAACGAATCTGGTTCAACG
TTTTGGCTGCAATTGTGCTGATTGTTTCAGTGGTATGGGGAATTGCACGA
CCTCCCACCGTAGACACGACGATCGATGGAAATCGTATATCAATTGCAAA
TGGAGATTTGTTTCCAATGGCAATGGCCATTGGGTTTACTGCTGCCAGCG
CGTTACCCCATTTACTGGTTGTTTTTTTGTGCTTCCGACCATATACCTCT
GGATGGATGTTGACCGACGTTGTGCATGGAAGGTGTGATCAGTTTGCTGC
ACACCATTCAAGTGGCAAGTTATATGTGCCTTGGTCATATATCAATTTGG
TTACCATAGGACGCATGATCTTTATTTTTGGATCGATAACATTTGTTCTA
GTTTACACTCTTTTGTCCTCTGATCCTATTCAAGTTGGGCTGCCCTAG

Coding sequence (CDS) from alignment at tig00000850_pilon:704198..706345-

>Ggra3642.t1 ID=Ggra3642.t1|Name=Ggra3642.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2148bp|location=Sequence derived from alignment at tig00000850_pilon:704198..706345- (Gracilaria gracilis GNS1m male)
ATGCAATCACGGCTTCGACGTATATTTTATGTGTTACAAGTTCTCGCGAC
GATCGCATATCTTCAATTCCGAGCCCGAAGAACGATTTCCATTTTTGATC
GCTCTCGAACCCCAGCCTACGTTGCGTATCAAATCTTTTTCTTTGCGCTG
GAATGTATATGTGTGATTCCGATTTTGTTCCAAATGCTTCAAGTATGGAA
TGTTCTCAGACGCAACTGTGTCGATTTTAAACGAATTCCGCGGCACTTGA
TCAAGCCGTACTTTCTACGCTCCCCAAACTACAGTTCAAGACCCGAATAC
TCCATGTACCCAACTGTGGCCGTGTACATCCCATGCTACAATGAGGATGT
TAATCTCGTGAGGGAGACAGTGCTTGGCGCTTTGAGAATCGATTACCCTC
AAGGTCTTTTCAGTGTATACCTCTGCGACGACGGACAAGACCCGCAGAAG
GAAGCGATGATCTCTAACCTAAAACTTCGACACGATAACTTGTGTTATGT
CACTCGACCGGAACACCAGCACGCTAAGGCCGGAAACCTCAACTACGCAT
TGAAACGGACTGAAAGTGATCTTGTGATCACTTTGGATGCTGACTTCATC
CCAAGACCAAACATCATTCAACGTCTCATGCCGTACTATTTTGTATGGAA
CCCAGACTCCAGTCTGTACGAGTTTAATGAGACTCTAGCCGTTGTGCAGA
CTCCGCAGCATTTTCGCAACCTCTCTCCCCACGACAGCGATCCTTTGGAT
CAGCGTTCTTTGTTGTTTTTCGATGTAGTACAGCACGGGAAAGATTGGTT
CAACGCCTCAACCATGGTAGGAACTAACAATCTCATCAGCAAAGCAGCTC
TTAAAGAAGCAGAGTACTATCCGTACTATTCCGTCACAGAAGACTCGGCT
ATGTCGCTCCAATTCCACAGCCTCGGATACCGTACCTACTATGTGAATGA
ATCGCTTGCAACTGGGCTGGCTACAACATCGCTTCGTAGCAATTTGCGGC
AACGTGCCAGATGGATGAAAGGTGATTGGCAGATCTTGTTTTCTAAGAAT
GGACTATTTGCTGCCCGGGGTTTGACGATGATTCAAAAACTCATGTACTT
TAACATGGGACTCGGAAGACTGATGTCCTTCACTTTCACGTTCTTTGACA
TAGCTTCAATCGCACTTCTCTTAGGGGGTGTCACTCCACTTGACGTACAG
TATCCATTGGTTTTCATAATCTACTTGGCACCTGTTCTTATCTTTGGAAC
TCTGGCACATTTCTTGTTCACCTCCGGAGGCAAGGGACTTAACAAATCGG
CGGCTGGTAATCTCACATTTGAGACTATGTTCAGATACAGCACTATGAAA
GGCCTTTTTGAGTACATATTCAACGGAGAGAACATCGTTTTCAAGGTTAC
GGACAAGTCAGATCCCACGCGGAAGACAAAGCAGCAAGAAAATAGTGAAA
ACACGGATGATAGCCAGAGTACTTCCAATAATGGGGATGAAGATAGTATG
CTTGATTCCGAAGTGGCATTCTCTTCATCAGCCCGTGAACAATGTGAGCG
AACATCCAAATCAATCTCGAATGGTGAAAAGTTAGAAAGTGAATCGGTAG
ATCAATACGTCGAAATGGTTGTGAATCAACAACAAAGTCAAGGCGGGGCT
GGAACTTTGTCTTTTAAAAGTAAGACAGATAAGAATCGCGAAGAAAACAA
CTACCACAGTAAGGAAGTTTGGAAGAATCTGGAACGAATCTGGTTCAACG
TTTTGGCTGCAATTGTGCTGATTGTTTCAGTGGTATGGGGAATTGCACGA
CCTCCCACCGTAGACACGACGATCGATGGAAATCGTATATCAATTGCAAA
TGGAGATTTGTTTCCAATGGCAATGGCCATTGGGTTTACTGCTGCCAGCG
CGTTACCCCATTTACTGGTTGTTTTTTTGTGCTTCCGACCATATACCTCT
GGATGGATGTTGACCGACGTTGTGCATGGAAGGTGTGATCAGTTTGCTGC
ACACCATTCAAGTGGCAAGTTATATGTGCCTTGGTCATATATCAATTTGG
TTACCATAGGACGCATGATCTTTATTTTTGGATCGATAACATTTGTTCTA
GTTTACACTCTTTTGTCCTCTGATCCTATTCAAGTTGGGCTGCCCTAG