Ggra364.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra364.t1
Unique Name	Ggra364.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	333

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000950_pilon	contig	tig00000950_pilon:164423..165421 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3659.XP_004164683.1
PFAMs	Lactamase_B_2
Max annot lvl	35493\|Streptophyta
Evalue	1.49e-51
EggNOG OGs	COG1235@1\|root,2QWBK@2759\|Eukaryota,37S3Q@33090\|Viridiplantae,3GBUC@35493\|Streptophyta,4JKRY@91835\|fabids
Description	Hydrolase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra364	Ggra364	Gracilaria gracilis GNS1m male	gene	tig00000950_pilon 164423..165421 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra364.t1.start1	Ggra364.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000950_pilon 164423..164425 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra364.t1.CDS1	Ggra364.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000950_pilon 164423..165421 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra364.t1.exon1	Ggra364.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000950_pilon 164423..165421 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra364.t1.stop1	Ggra364.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000950_pilon 165419..165421 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra364.t1	Ggra364.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000950_pilon 164423..165421 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000950_pilon:164423..165421+
coding sequence from alignment at tig00000950_pilon:164423..165421+

mRNA sequence

>Ggra364.t1 ID=Ggra364.t1|Name=Ggra364.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=333bp
MSVANSFSDSPNEFVVLGSGVSTSIPKINCITRPSEDRPCLVCRHAFENP
LSKERRNNVCALVRHSGKTVLLDCGKTMRDATMRHFPKLGVRDVDAIVLT
HGHADAVLGLDDARDLQRGATYGRENGKVTRKEATHTPIYLNEETMETCR
RVFPYLMPPKEAAKNGQQVKKDIPRRVAALEWKVFDEHQYLKPFYPVKGA
GIQLTPIKMWHGGDYVCMGYLVRLEETIGSREKVVAYLSDLHALPTESLR
FLKGLPRIDLLVVDLLSDSPNRSHFNREDAINLVRELRPYEAVAVGMTCS
LGFHDKVNEQLADLRDEGIQFRLAYDGERFPC*

spliced messenger RNA

>Ggra364.t1 ID=Ggra364.t1|Name=Ggra364.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=999bp|location=Sequence derived from alignment at tig00000950_pilon:164423..165421+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGTCGCAAACTCTTTTTCAGACTCGCCGAATGAGTTTGTCGTTCT
GGGATCCGGTGTTTCGACATCGATTCCGAAGATAAACTGCATAACACGAC
CATCTGAAGACCGCCCATGCCTGGTTTGCAGGCATGCCTTTGAGAATCCC
TTATCGAAGGAGCGTCGAAATAACGTTTGCGCCTTGGTACGACACTCTGG
GAAGACCGTGTTGCTTGATTGTGGCAAGACTATGCGTGATGCCACTATGC
GCCATTTTCCCAAACTAGGTGTCCGTGATGTGGACGCCATCGTTCTAACG
CACGGCCATGCCGATGCCGTCTTGGGTTTAGATGACGCCAGAGATCTGCA
AAGAGGCGCCACTTACGGCAGGGAAAACGGCAAGGTGACACGGAAGGAGG
CAACACATACTCCAATCTATCTAAACGAGGAGACCATGGAAACGTGTAGA
CGAGTGTTCCCATACTTAATGCCGCCCAAAGAAGCTGCCAAGAATGGGCA
GCAAGTGAAGAAAGATATCCCAAGACGAGTTGCTGCGTTGGAGTGGAAAG
TTTTTGATGAACACCAATATCTAAAACCATTCTACCCCGTGAAGGGCGCA
GGCATTCAACTAACTCCGATAAAGATGTGGCACGGTGGCGATTACGTTTG
CATGGGATACCTTGTACGACTAGAAGAGACCATCGGCTCACGCGAGAAGG
TTGTTGCGTATCTCAGTGATCTTCATGCCCTGCCTACAGAATCATTGCGG
TTCCTTAAAGGACTGCCGAGGATTGATTTACTTGTTGTTGACTTGCTCTC
CGACTCACCAAATAGGTCACACTTCAACCGGGAGGACGCTATAAATCTTG
TTCGCGAACTGCGACCTTACGAAGCAGTTGCCGTTGGTATGACTTGCTCT
CTCGGGTTTCACGATAAAGTCAATGAGCAATTGGCGGACCTAAGGGATGA
AGGGATTCAGTTTAGATTAGCCTACGACGGAGAGAGATTCCCGTGTTGA

protein sequence of Ggra364.t1

>Ggra364.t1 ID=Ggra364.t1|Name=Ggra364.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=333bp
MSVANSFSDSPNEFVVLGSGVSTSIPKINCITRPSEDRPCLVCRHAFENP
LSKERRNNVCALVRHSGKTVLLDCGKTMRDATMRHFPKLGVRDVDAIVLT
HGHADAVLGLDDARDLQRGATYGRENGKVTRKEATHTPIYLNEETMETCR
RVFPYLMPPKEAAKNGQQVKKDIPRRVAALEWKVFDEHQYLKPFYPVKGA
GIQLTPIKMWHGGDYVCMGYLVRLEETIGSREKVVAYLSDLHALPTESLR
FLKGLPRIDLLVVDLLSDSPNRSHFNREDAINLVRELRPYEAVAVGMTCS
LGFHDKVNEQLADLRDEGIQFRLAYDGERFPC*

mRNA from alignment at tig00000950_pilon:164423..165421+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra364.t1 ID=Ggra364.t1|Name=Ggra364.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=999bp|location=Sequence derived from alignment at tig00000950_pilon:164423..165421+ (Gracilaria gracilis GNS1m male)
ATGAGCGTCGCAAACTCTTTTTCAGACTCGCCGAATGAGTTTGTCGTTCT
GGGATCCGGTGTTTCGACATCGATTCCGAAGATAAACTGCATAACACGAC
CATCTGAAGACCGCCCATGCCTGGTTTGCAGGCATGCCTTTGAGAATCCC
TTATCGAAGGAGCGTCGAAATAACGTTTGCGCCTTGGTACGACACTCTGG
GAAGACCGTGTTGCTTGATTGTGGCAAGACTATGCGTGATGCCACTATGC
GCCATTTTCCCAAACTAGGTGTCCGTGATGTGGACGCCATCGTTCTAACG
CACGGCCATGCCGATGCCGTCTTGGGTTTAGATGACGCCAGAGATCTGCA
AAGAGGCGCCACTTACGGCAGGGAAAACGGCAAGGTGACACGGAAGGAGG
CAACACATACTCCAATCTATCTAAACGAGGAGACCATGGAAACGTGTAGA
CGAGTGTTCCCATACTTAATGCCGCCCAAAGAAGCTGCCAAGAATGGGCA
GCAAGTGAAGAAAGATATCCCAAGACGAGTTGCTGCGTTGGAGTGGAAAG
TTTTTGATGAACACCAATATCTAAAACCATTCTACCCCGTGAAGGGCGCA
GGCATTCAACTAACTCCGATAAAGATGTGGCACGGTGGCGATTACGTTTG
CATGGGATACCTTGTACGACTAGAAGAGACCATCGGCTCACGCGAGAAGG
TTGTTGCGTATCTCAGTGATCTTCATGCCCTGCCTACAGAATCATTGCGG
TTCCTTAAAGGACTGCCGAGGATTGATTTACTTGTTGTTGACTTGCTCTC
CGACTCACCAAATAGGTCACACTTCAACCGGGAGGACGCTATAAATCTTG
TTCGCGAACTGCGACCTTACGAAGCAGTTGCCGTTGGTATGACTTGCTCT
CTCGGGTTTCACGATAAAGTCAATGAGCAATTGGCGGACCTAAGGGATGA
AGGGATTCAGTTTAGATTAGCCTACGACGGAGAGAGATTCCCGTGTTGA

Coding sequence (CDS) from alignment at tig00000950_pilon:164423..165421+

>Ggra364.t1 ID=Ggra364.t1|Name=Ggra364.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=999bp|location=Sequence derived from alignment at tig00000950_pilon:164423..165421+ (Gracilaria gracilis GNS1m male)
ATGAGCGTCGCAAACTCTTTTTCAGACTCGCCGAATGAGTTTGTCGTTCT
GGGATCCGGTGTTTCGACATCGATTCCGAAGATAAACTGCATAACACGAC
CATCTGAAGACCGCCCATGCCTGGTTTGCAGGCATGCCTTTGAGAATCCC
TTATCGAAGGAGCGTCGAAATAACGTTTGCGCCTTGGTACGACACTCTGG
GAAGACCGTGTTGCTTGATTGTGGCAAGACTATGCGTGATGCCACTATGC
GCCATTTTCCCAAACTAGGTGTCCGTGATGTGGACGCCATCGTTCTAACG
CACGGCCATGCCGATGCCGTCTTGGGTTTAGATGACGCCAGAGATCTGCA
AAGAGGCGCCACTTACGGCAGGGAAAACGGCAAGGTGACACGGAAGGAGG
CAACACATACTCCAATCTATCTAAACGAGGAGACCATGGAAACGTGTAGA
CGAGTGTTCCCATACTTAATGCCGCCCAAAGAAGCTGCCAAGAATGGGCA
GCAAGTGAAGAAAGATATCCCAAGACGAGTTGCTGCGTTGGAGTGGAAAG
TTTTTGATGAACACCAATATCTAAAACCATTCTACCCCGTGAAGGGCGCA
GGCATTCAACTAACTCCGATAAAGATGTGGCACGGTGGCGATTACGTTTG
CATGGGATACCTTGTACGACTAGAAGAGACCATCGGCTCACGCGAGAAGG
TTGTTGCGTATCTCAGTGATCTTCATGCCCTGCCTACAGAATCATTGCGG
TTCCTTAAAGGACTGCCGAGGATTGATTTACTTGTTGTTGACTTGCTCTC
CGACTCACCAAATAGGTCACACTTCAACCGGGAGGACGCTATAAATCTTG
TTCGCGAACTGCGACCTTACGAAGCAGTTGCCGTTGGTATGACTTGCTCT
CTCGGGTTTCACGATAAAGTCAATGAGCAATTGGCGGACCTAAGGGATGA
AGGGATTCAGTTTAGATTAGCCTACGACGGAGAGAGATTCCCGTGTTGA