Ggra3635.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3635.t1
Unique NameGgra3635.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length349
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:377270..378674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3635Ggra3635Gracilaria gracilis GNS1m malegenetig00000850_pilon 377270..378674 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3635.t1Ggra3635.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 377270..378674 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3635.t1.start1Ggra3635.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 377270..377272 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3635.t1.CDS1Ggra3635.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 377270..377351 +
Ggra3635.t1.CDS2Ggra3635.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000850_pilon 377449..377724 +
Ggra3635.t1.CDS3Ggra3635.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000850_pilon 377811..378083 +
Ggra3635.t1.CDS4Ggra3635.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000850_pilon 378183..378458 +
Ggra3635.t1.CDS5Ggra3635.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000850_pilon 378535..378674 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3635.t1.exon1Ggra3635.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 377270..377351 +
Ggra3635.t1.exon2Ggra3635.t1.exon2Gracilaria gracilis GNS1m maleexontig00000850_pilon 377449..377724 +
Ggra3635.t1.exon3Ggra3635.t1.exon3Gracilaria gracilis GNS1m maleexontig00000850_pilon 377811..378083 +
Ggra3635.t1.exon4Ggra3635.t1.exon4Gracilaria gracilis GNS1m maleexontig00000850_pilon 378183..378458 +
Ggra3635.t1.exon5Ggra3635.t1.exon5Gracilaria gracilis GNS1m maleexontig00000850_pilon 378535..378674 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3635.t1.intron1Ggra3635.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000850_pilon 377352..377448 +
Ggra3635.t1.intron2Ggra3635.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000850_pilon 377725..377810 +
Ggra3635.t1.intron3Ggra3635.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000850_pilon 378084..378182 +
Ggra3635.t1.intron4Ggra3635.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000850_pilon 378459..378534 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3635.t1.stop1Ggra3635.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 378672..378674 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3635.t1 ID=Ggra3635.t1|Name=Ggra3635.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=349bp
MEDTRWKCKVQNEDRTKIRQHLLMQLEGAFPNSDHERARLEIERIERNAY
DIALSRQEYLETIVTCVSHLEQRERRNHYEMSVARQPILPSDVQENSWKR
EMPNEDRTKIHQHLLMQLKEAFPNSNHEQLRLESERIEGSAFDTARSRQE
YLETVATSITELEQRKRRTHNEMSVARQPTLPSEMQHSWQREMTKESRQR
VCQYVLSEIVGFISPSVSDFDWRRLEPATRRFEASMFNTATSVRNYLELV
AEKLSMIKQATGITTEPARENDGTDNALSSVGALFTLPPTAQGTSLNIDD
QMTLGEFDKAEAFLGLLHGTGWENETVDEMAVSFDINNASSNPRPRSA*
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spliced messenger RNA

>Ggra3635.t1 ID=Ggra3635.t1|Name=Ggra3635.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1047bp|location=Sequence derived from alignment at tig00000850_pilon:377270..378674+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGACACCCGCTGGAAATGCAAGGTGCAGAACGAGGATCGCACAAA
GATTCGTCAGCACCTTCTGATGCAGCTTGAAGGTGCCTTCCCCAATAGTG
ACCACGAACGGGCAAGACTTGAAATCGAACGCATCGAAAGGAATGCGTAT
GATATCGCTCTTTCCCGTCAAGAATATCTAGAAACGATTGTTACATGCGT
TTCTCATCTCGAACAACGCGAACGCCGAAATCACTATGAGATGTCTGTTG
CCAGGCAACCCATATTACCATCAGACGTGCAGGAGAACAGCTGGAAACGC
GAGATGCCGAACGAGGATCGCACAAAAATTCATCAGCACCTTCTGATGCA
GCTTAAAGAGGCCTTCCCCAACAGCAACCACGAACAACTTAGACTTGAAA
GCGAACGCATCGAAGGAAGTGCATTTGATACCGCTCGTTCGCGTCAAGAA
TATCTAGAAACGGTTGCTACAAGCATTACTGAGCTCGAACAGCGCAAACG
CCGGACTCACAATGAGATGTCTGTCGCCAGGCAACCCACATTACCATCGG
AAATGCAGCACAGCTGGCAACGCGAGATGACGAAGGAAAGCCGCCAACGA
GTCTGCCAATACGTTCTAAGCGAGATAGTCGGGTTCATCAGTCCTTCGGT
GTCCGACTTTGATTGGCGACGACTGGAACCTGCCACGAGGCGGTTTGAAG
CGAGTATGTTTAACACAGCGACTAGTGTACGCAACTACCTAGAGTTGGTT
GCTGAAAAGCTGTCTATGATCAAACAGGCCACAGGTATTACAACTGAACC
GGCTCGTGAAAACGATGGAACGGACAATGCGTTATCGTCAGTAGGCGCAC
TTTTCACTCTACCTCCCACTGCACAGGGAACTTCGCTGAATATAGACGAT
CAGATGACTCTCGGAGAGTTTGACAAGGCCGAAGCCTTCCTCGGTTTACT
ACATGGTACTGGTTGGGAGAATGAAACTGTTGACGAGATGGCTGTGTCAT
TTGACATCAACAACGCGTCAAGCAATCCGCGGCCAAGGAGTGCGTAA
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protein sequence of Ggra3635.t1

>Ggra3635.t1 ID=Ggra3635.t1|Name=Ggra3635.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=349bp
MEDTRWKCKVQNEDRTKIRQHLLMQLEGAFPNSDHERARLEIERIERNAY
DIALSRQEYLETIVTCVSHLEQRERRNHYEMSVARQPILPSDVQENSWKR
EMPNEDRTKIHQHLLMQLKEAFPNSNHEQLRLESERIEGSAFDTARSRQE
YLETVATSITELEQRKRRTHNEMSVARQPTLPSEMQHSWQREMTKESRQR
VCQYVLSEIVGFISPSVSDFDWRRLEPATRRFEASMFNTATSVRNYLELV
AEKLSMIKQATGITTEPARENDGTDNALSSVGALFTLPPTAQGTSLNIDD
QMTLGEFDKAEAFLGLLHGTGWENETVDEMAVSFDINNASSNPRPRSA*
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mRNA from alignment at tig00000850_pilon:377270..378674+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3635.t1 ID=Ggra3635.t1|Name=Ggra3635.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1405bp|location=Sequence derived from alignment at tig00000850_pilon:377270..378674+ (Gracilaria gracilis GNS1m male)
ATGGAAGACACCCGCTGGAAATGCAAGGTGCAGAACGAGGATCGCACAAA
GATTCGTCAGCACCTTCTGATGCAGCTTGAAGGTATGTAACTACCCTTTT
CCAAAAGCACCACACAACGCAGTGTTCCCGCGTTTCCCCAGTTTACTCAC
GTCATGCACATGTTCGGCATTGCTCGCAGGTGCCTTCCCCAATAGTGACC
ACGAACGGGCAAGACTTGAAATCGAACGCATCGAAAGGAATGCGTATGAT
ATCGCTCTTTCCCGTCAAGAATATCTAGAAACGATTGTTACATGCGTTTC
TCATCTCGAACAACGCGAACGCCGAAATCACTATGAGATGTCTGTTGCCA
GGCAACCCATATTACCATCAGACGTGCAGGAGAACAGCTGGAAACGCGAG
ATGCCGAACGAGGATCGCACAAAAATTCATCAGCACCTTCTGATGCAGCT
TAAAGGTATGTAACTACCCTTTTCCAAAAGCACCACACACGCGGTTTTCC
CGCGCTTCCCCATTTTACTCACACCATGTACTTGCTCGCAGAGGCCTTCC
CCAACAGCAACCACGAACAACTTAGACTTGAAAGCGAACGCATCGAAGGA
AGTGCATTTGATACCGCTCGTTCGCGTCAAGAATATCTAGAAACGGTTGC
TACAAGCATTACTGAGCTCGAACAGCGCAAACGCCGGACTCACAATGAGA
TGTCTGTCGCCAGGCAACCCACATTACCATCGGAAATGCAGCACAGCTGG
CAACGCGAGATGACGAAGGAAAGCCGCCAACGAGTCTGCCAATACGTTCT
AAGCGAGATAGTCGGTATGTAACAACCACTCTTTACAATCTTTCCCGCGC
AAGTAACGCATGAATTTCTAGTTTCTCATTGATGCTCGCTTTCGTTTTGC
GTATCATCCATAGGGTTCATCAGTCCTTCGGTGTCCGACTTTGATTGGCG
ACGACTGGAACCTGCCACGAGGCGGTTTGAAGCGAGTATGTTTAACACAG
CGACTAGTGTACGCAACTACCTAGAGTTGGTTGCTGAAAAGCTGTCTATG
ATCAAACAGGCCACAGGTATTACAACTGAACCGGCTCGTGAAAACGATGG
AACGGACAATGCGTTATCGTCAGTAGGCGCACTTTTCACTCTACCTCCCA
CTGCACAGGGAACTTCGCTGAATATAGACGATCAGATGAGTAAGCTGGTG
CACGAGTTGGGAGAGTTGAACATTTGAACAAGGCAGCAGTTTGCTAGACG
TCATTCTTGGAGTAGCTCTCGGAGAGTTTGACAAGGCCGAAGCCTTCCTC
GGTTTACTACATGGTACTGGTTGGGAGAATGAAACTGTTGACGAGATGGC
TGTGTCATTTGACATCAACAACGCGTCAAGCAATCCGCGGCCAAGGAGTG
CGTAA
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Coding sequence (CDS) from alignment at tig00000850_pilon:377270..378674+

>Ggra3635.t1 ID=Ggra3635.t1|Name=Ggra3635.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1047bp|location=Sequence derived from alignment at tig00000850_pilon:377270..378674+ (Gracilaria gracilis GNS1m male)
ATGGAAGACACCCGCTGGAAATGCAAGGTGCAGAACGAGGATCGCACAAA
GATTCGTCAGCACCTTCTGATGCAGCTTGAAGGTGCCTTCCCCAATAGTG
ACCACGAACGGGCAAGACTTGAAATCGAACGCATCGAAAGGAATGCGTAT
GATATCGCTCTTTCCCGTCAAGAATATCTAGAAACGATTGTTACATGCGT
TTCTCATCTCGAACAACGCGAACGCCGAAATCACTATGAGATGTCTGTTG
CCAGGCAACCCATATTACCATCAGACGTGCAGGAGAACAGCTGGAAACGC
GAGATGCCGAACGAGGATCGCACAAAAATTCATCAGCACCTTCTGATGCA
GCTTAAAGAGGCCTTCCCCAACAGCAACCACGAACAACTTAGACTTGAAA
GCGAACGCATCGAAGGAAGTGCATTTGATACCGCTCGTTCGCGTCAAGAA
TATCTAGAAACGGTTGCTACAAGCATTACTGAGCTCGAACAGCGCAAACG
CCGGACTCACAATGAGATGTCTGTCGCCAGGCAACCCACATTACCATCGG
AAATGCAGCACAGCTGGCAACGCGAGATGACGAAGGAAAGCCGCCAACGA
GTCTGCCAATACGTTCTAAGCGAGATAGTCGGGTTCATCAGTCCTTCGGT
GTCCGACTTTGATTGGCGACGACTGGAACCTGCCACGAGGCGGTTTGAAG
CGAGTATGTTTAACACAGCGACTAGTGTACGCAACTACCTAGAGTTGGTT
GCTGAAAAGCTGTCTATGATCAAACAGGCCACAGGTATTACAACTGAACC
GGCTCGTGAAAACGATGGAACGGACAATGCGTTATCGTCAGTAGGCGCAC
TTTTCACTCTACCTCCCACTGCACAGGGAACTTCGCTGAATATAGACGAT
CAGATGACTCTCGGAGAGTTTGACAAGGCCGAAGCCTTCCTCGGTTTACT
ACATGGTACTGGTTGGGAGAATGAAACTGTTGACGAGATGGCTGTGTCAT
TTGACATCAACAACGCGTCAAGCAATCCGCGGCCAAGGAGTGCGTAA
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