Ggra3625.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3625.t1
Unique NameGgra3625.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length241
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:338466..339188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ27666
PFAMsPRAI
Max annot lvl35493|Streptophyta
KEGG rclassRC00945
KEGG koko:K01817
KEGG ReactionR03509
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00023
GOsGO:0000162,GO:0003674,GO:0003824,GO:0004640,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009314,GO:0009411,GO:0009416,GO:0009507,GO:0009536,GO:0009628,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0032501,GO:0032502,GO:0034641,GO:0040007,GO:0042401,GO:0042430,GO:0042435,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0048856,GO:0050896,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue1.68e-41
EggNOG OGsCOG0135@1|root,KOG4202@2759|Eukaryota,37KQ9@33090|Viridiplantae,3GB5H@35493|Streptophyta
EC5.3.1.24
DescriptionN-(5'-phosphoribosyl)anthranilate isomerase
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3625Ggra3625Gracilaria gracilis GNS1m malegenetig00000850_pilon 338466..339188 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3625.t1.start1Ggra3625.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 338466..338468 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3625.t1.CDS1Ggra3625.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 338466..339188 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3625.t1.exon1Ggra3625.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 338466..339188 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3625.t1.stop1Ggra3625.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 339186..339188 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3625.t1Ggra3625.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 338466..339188 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3625.t1 ID=Ggra3625.t1|Name=Ggra3625.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=241bp
MKMPCLSFAAPFPSPTPALQAVKVCAVVSPEDAEMIVSAAKQVLPAHVDL
MIGMILWPHSRRSVDKSTAKQISAVASRSGAQPIAVFVDETVADMSETCR
QIGVDVAQLHGPNCRSHWSNDTDDTNLKWIDVRDVSTDGAVSTQTLSSRG
RPLWSIFDAKGGGTGKAFDWKQFTPPENPWLLAGGLDPQNVEEAVRTLRP
SGVDVATGVTCPDKCRKDEERLYEFLTTLVRSYSEDVVIQ*
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spliced messenger RNA

>Ggra3625.t1 ID=Ggra3625.t1|Name=Ggra3625.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=723bp|location=Sequence derived from alignment at tig00000850_pilon:338466..339188+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGATGCCTTGCTTGTCCTTCGCTGCCCCGTTCCCGTCCCCCACTCC
GGCACTACAGGCTGTGAAGGTTTGCGCAGTCGTAAGCCCCGAGGACGCCG
AGATGATTGTGTCCGCCGCCAAACAAGTCTTGCCCGCACACGTTGATCTC
ATGATCGGAATGATTCTGTGGCCACATTCTCGTCGCTCGGTAGATAAGAG
CACGGCGAAACAAATATCCGCCGTAGCGTCAAGATCGGGTGCGCAACCCA
TTGCAGTGTTTGTCGATGAGACGGTGGCGGACATGAGTGAGACCTGTCGC
CAGATTGGTGTGGATGTTGCGCAACTTCATGGACCGAACTGTCGATCACA
TTGGAGCAATGACACAGATGACACTAATCTAAAGTGGATTGATGTGCGCG
ATGTGTCGACGGACGGGGCTGTCTCCACGCAAACGCTCTCCTCTCGTGGT
CGTCCTCTATGGTCAATCTTTGATGCCAAAGGCGGAGGAACTGGAAAGGC
TTTTGACTGGAAGCAATTCACTCCACCTGAAAATCCTTGGTTGTTGGCCG
GTGGTCTCGATCCTCAAAATGTTGAAGAAGCTGTCCGGACCCTGCGGCCA
AGTGGGGTAGATGTGGCGACGGGCGTTACATGCCCTGACAAATGTCGAAA
GGATGAAGAACGGCTTTACGAATTCTTGACAACTCTAGTGCGGTCGTATT
CGGAAGATGTTGTCATTCAATAA
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protein sequence of Ggra3625.t1

>Ggra3625.t1 ID=Ggra3625.t1|Name=Ggra3625.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=241bp
MKMPCLSFAAPFPSPTPALQAVKVCAVVSPEDAEMIVSAAKQVLPAHVDL
MIGMILWPHSRRSVDKSTAKQISAVASRSGAQPIAVFVDETVADMSETCR
QIGVDVAQLHGPNCRSHWSNDTDDTNLKWIDVRDVSTDGAVSTQTLSSRG
RPLWSIFDAKGGGTGKAFDWKQFTPPENPWLLAGGLDPQNVEEAVRTLRP
SGVDVATGVTCPDKCRKDEERLYEFLTTLVRSYSEDVVIQ*
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mRNA from alignment at tig00000850_pilon:338466..339188+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3625.t1 ID=Ggra3625.t1|Name=Ggra3625.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=723bp|location=Sequence derived from alignment at tig00000850_pilon:338466..339188+ (Gracilaria gracilis GNS1m male)
ATGAAGATGCCTTGCTTGTCCTTCGCTGCCCCGTTCCCGTCCCCCACTCC
GGCACTACAGGCTGTGAAGGTTTGCGCAGTCGTAAGCCCCGAGGACGCCG
AGATGATTGTGTCCGCCGCCAAACAAGTCTTGCCCGCACACGTTGATCTC
ATGATCGGAATGATTCTGTGGCCACATTCTCGTCGCTCGGTAGATAAGAG
CACGGCGAAACAAATATCCGCCGTAGCGTCAAGATCGGGTGCGCAACCCA
TTGCAGTGTTTGTCGATGAGACGGTGGCGGACATGAGTGAGACCTGTCGC
CAGATTGGTGTGGATGTTGCGCAACTTCATGGACCGAACTGTCGATCACA
TTGGAGCAATGACACAGATGACACTAATCTAAAGTGGATTGATGTGCGCG
ATGTGTCGACGGACGGGGCTGTCTCCACGCAAACGCTCTCCTCTCGTGGT
CGTCCTCTATGGTCAATCTTTGATGCCAAAGGCGGAGGAACTGGAAAGGC
TTTTGACTGGAAGCAATTCACTCCACCTGAAAATCCTTGGTTGTTGGCCG
GTGGTCTCGATCCTCAAAATGTTGAAGAAGCTGTCCGGACCCTGCGGCCA
AGTGGGGTAGATGTGGCGACGGGCGTTACATGCCCTGACAAATGTCGAAA
GGATGAAGAACGGCTTTACGAATTCTTGACAACTCTAGTGCGGTCGTATT
CGGAAGATGTTGTCATTCAATAA
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Coding sequence (CDS) from alignment at tig00000850_pilon:338466..339188+

>Ggra3625.t1 ID=Ggra3625.t1|Name=Ggra3625.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=723bp|location=Sequence derived from alignment at tig00000850_pilon:338466..339188+ (Gracilaria gracilis GNS1m male)
ATGAAGATGCCTTGCTTGTCCTTCGCTGCCCCGTTCCCGTCCCCCACTCC
GGCACTACAGGCTGTGAAGGTTTGCGCAGTCGTAAGCCCCGAGGACGCCG
AGATGATTGTGTCCGCCGCCAAACAAGTCTTGCCCGCACACGTTGATCTC
ATGATCGGAATGATTCTGTGGCCACATTCTCGTCGCTCGGTAGATAAGAG
CACGGCGAAACAAATATCCGCCGTAGCGTCAAGATCGGGTGCGCAACCCA
TTGCAGTGTTTGTCGATGAGACGGTGGCGGACATGAGTGAGACCTGTCGC
CAGATTGGTGTGGATGTTGCGCAACTTCATGGACCGAACTGTCGATCACA
TTGGAGCAATGACACAGATGACACTAATCTAAAGTGGATTGATGTGCGCG
ATGTGTCGACGGACGGGGCTGTCTCCACGCAAACGCTCTCCTCTCGTGGT
CGTCCTCTATGGTCAATCTTTGATGCCAAAGGCGGAGGAACTGGAAAGGC
TTTTGACTGGAAGCAATTCACTCCACCTGAAAATCCTTGGTTGTTGGCCG
GTGGTCTCGATCCTCAAAATGTTGAAGAAGCTGTCCGGACCCTGCGGCCA
AGTGGGGTAGATGTGGCGACGGGCGTTACATGCCCTGACAAATGTCGAAA
GGATGAAGAACGGCTTTACGAATTCTTGACAACTCTAGTGCGGTCGTATT
CGGAAGATGTTGTCATTCAATAA
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