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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 31033.ENSTRUP00000040180 |
| Preferred name | PRIM2 |
| PFAMs | DNA_primase_lrg |
| Max annot lvl | 33208|Metazoa |
| KEGG rclass | RC02795 |
| KEGG ko | ko:K02685 |
| KEGG Reaction | R00375,R00376,R00377,R00378 |
| KEGG Pathway | ko00230,ko00240,ko01100,ko03030,map00230,map00240,map01100,map03030 |
| KEGG Module | M00261 |
| GOs | GO:0000082,GO:0000228,GO:0000278,GO:0000428,GO:0000723,GO:0001654,GO:0001745,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0003887,GO:0003896,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005658,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006269,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007275,GO:0007423,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009653,GO:0009887,GO:0009987,GO:0016043,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019725,GO:0022402,GO:0030880,GO:0030894,GO:0031974,GO:0031981,GO:0032200,GO:0032201,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0032993,GO:0033260,GO:0034061,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043601,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0046483,GO:0048513,GO:0048592,GO:0048731,GO:0048749,GO:0048856,GO:0051276,GO:0055029,GO:0060249,GO:0061695,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090596,GO:0097159,GO:0097747,GO:0140097,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1903047,GO:1990234 |
| Evalue | 4.81e-75 |
| EggNOG OGs | COG2219@1|root,KOG2267@2759|Eukaryota,38FWH@33154|Opisthokonta,3BFMC@33208|Metazoa,3CRN7@33213|Bilateria,486A4@7711|Chordata,491DZ@7742|Vertebrata,49YMY@7898|Actinopterygii |
| Description | DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication |
| COG category | L |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko03032 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra3621.t1.start1 | Ggra3621.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000850_pilon 329950..329952 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra3621.t1.stop1 | Ggra3621.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000850_pilon 332239..332241 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra3621.t1 ID=Ggra3621.t1|Name=Ggra3621.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=764bp MWMRDAGGRAVLTDECSQTFMACAERLTQADARREREPCVCASSRAVCKS FSLCARDAQPRALCTGNNSRRANVVCQRCLQPDPAHLAPLLTASCELPGA QPKQRAHAFSRQKALAAFDLLSCAALHRCIRTLNAGVFFVPLVLYFTPFI RFAATHALRFAMEVIRAATNAPADEGYTAQTHQGSSYAPLYTSSSLGMHP FDLEHLEAISIRRLKLLKDAEKVRSTQQLGVQRVHTALDAPKAKIRRAER THDMHIPPVGNLDRREKIRDDEASHFMVRMALCSTQRAWLLNTEYDLFTA RLDGTGAEFALNAIEKATGLVVKRVSSSELEHIRQELNAVALGPNRLRSN ENTRYYKIAFEEVPALVRHRKVFLRDGFAYVPESNILEVVAAQFRTLLSA GLAVTMNNVAVAERDDRMRPILRSIRQHFEADEQSKKAFDPNASIDRISL KELDQSLPAMPLCMHNMMVQLRQNHHLRHSARMQLGVFLKACGLTMEESL KFWKAEFGKGSITSDKFEKQYAYNIRHQYGKEGKRRNLPAFNCLKIINGR PGPGEHNGCPYREFEESRLRTSLRALGTAPDAIPVIVARAKEGNYQAACG MCFASSQPGHHPVSEYGLPEFIPDHPNSYFIEARRRRFGPPPETPSIDDE VDDEDLLMASEAVEAEHCVSKNELQANKGDNNAIGGPEDDQEAKHELQNK KGDTNDPDTKRVESVSNEKTGVSIAVDENQAKDPMEIVLPEEKLGAGSKP VEKPEGESKESEE* back to topspliced messenger RNA >Ggra3621.t1 ID=Ggra3621.t1|Name=Ggra3621.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2292bp|location=Sequence derived from alignment at tig00000850_pilon:329950..332241+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGTGGATGCGCGACGCGGGAGGCAGAGCAGTGCTCACAGACGAGTGCAG TCAAACATTCATGGCGTGCGCTGAAAGGCTAACACAGGCGGACGCGAGAC GCGAGCGCGAGCCGTGTGTGTGTGCGTCATCGCGGGCGGTGTGCAAGTCG TTCAGCTTATGCGCCCGTGACGCGCAACCGCGCGCCCTGTGCACGGGCAA CAATTCACGGCGTGCAAACGTTGTGTGTCAGCGCTGCTTACAGCCAGATC CGGCGCACCTCGCGCCCCTCCTCACCGCGTCGTGTGAGCTTCCGGGCGCG CAACCGAAACAGCGGGCGCACGCCTTTTCCCGCCAAAAAGCACTCGCCGC CTTCGATCTTCTGTCTTGCGCCGCGTTGCATCGATGCATTCGCACACTCA ATGCCGGCGTCTTCTTCGTGCCGCTCGTGCTTTACTTCACGCCCTTCATT CGCTTCGCTGCCACTCACGCGTTACGCTTCGCCATGGAGGTTATTCGCGC CGCCACAAACGCTCCCGCGGACGAAGGGTACACAGCGCAGACGCATCAGG GCTCGTCTTACGCGCCGTTGTACACCTCCTCTTCGCTGGGCATGCATCCA TTCGACCTGGAGCACCTGGAAGCCATTTCCATCAGGAGGCTCAAGTTACT CAAGGATGCTGAGAAGGTTCGCTCTACGCAACAGCTGGGTGTGCAGCGCG TCCACACTGCGCTCGACGCTCCGAAGGCCAAGATTCGTCGCGCTGAACGC ACACATGACATGCATATCCCGCCCGTGGGCAATCTCGACAGACGTGAAAA GATTCGCGATGATGAGGCTTCTCACTTTATGGTTAGAATGGCTCTTTGTT CTACCCAGCGCGCGTGGTTGCTCAACACCGAGTATGATCTTTTCACAGCC CGGCTGGACGGTACCGGTGCCGAATTTGCTCTCAACGCCATCGAAAAAGC CACCGGACTGGTTGTGAAGCGCGTGTCCAGCAGCGAACTCGAGCACATTC GTCAGGAGCTCAATGCTGTTGCTCTGGGCCCTAATAGATTAAGAAGCAAT GAAAACACCCGCTACTACAAGATTGCTTTCGAAGAGGTACCGGCGCTGGT GCGGCACAGAAAGGTTTTCTTGCGCGATGGTTTTGCATATGTACCAGAAA GCAACATCCTAGAAGTTGTGGCTGCTCAGTTTCGCACTTTGCTCAGCGCC GGTTTAGCCGTTACCATGAACAACGTGGCCGTCGCGGAGAGAGACGACAG AATGAGACCCATTCTCAGATCTATTCGGCAGCATTTCGAAGCTGACGAAC AATCCAAGAAGGCCTTTGATCCGAATGCATCTATTGACCGCATATCGCTC AAAGAGCTAGACCAATCGCTTCCGGCTATGCCATTGTGCATGCACAACAT GATGGTGCAATTACGACAAAATCATCATCTTCGTCATTCCGCCAGAATGC AACTTGGAGTGTTTCTAAAAGCTTGCGGGTTAACTATGGAAGAGTCTCTC AAGTTTTGGAAAGCAGAGTTTGGCAAGGGAAGCATAACGTCCGACAAGTT CGAAAAGCAGTATGCGTATAATATTCGCCATCAGTACGGGAAAGAAGGTA AACGTCGAAACCTTCCGGCGTTCAACTGTCTGAAAATAATCAATGGCAGA CCAGGCCCCGGAGAACATAACGGATGCCCATATCGAGAGTTTGAGGAATC CCGCTTGAGAACGTCCCTCAGGGCACTAGGAACTGCCCCTGACGCAATTC CAGTGATTGTGGCCAGGGCGAAGGAGGGCAACTACCAAGCGGCCTGTGGA ATGTGTTTTGCATCGTCTCAACCGGGTCATCACCCAGTCAGCGAATACGG TCTTCCCGAATTCATCCCGGACCATCCTAATTCATACTTCATCGAAGCTA GGAGGAGACGTTTCGGGCCCCCGCCAGAAACCCCCTCGATAGACGATGAG GTGGATGATGAGGACTTGCTGATGGCATCTGAGGCGGTTGAAGCGGAGCA TTGCGTATCAAAGAACGAGTTGCAAGCTAACAAGGGAGATAATAATGCAA TAGGCGGGCCTGAAGACGATCAGGAAGCGAAACACGAGCTTCAAAATAAG AAGGGCGATACAAATGATCCGGATACCAAACGAGTAGAGTCCGTTTCAAA CGAGAAGACTGGGGTCTCCATAGCAGTAGATGAGAACCAAGCGAAAGATC CGATGGAAATCGTTCTTCCAGAGGAAAAGCTAGGCGCAGGTAGCAAGCCA GTAGAGAAACCAGAGGGCGAATCAAAAGAATCCGAAGAGTAA back to topprotein sequence of Ggra3621.t1 >Ggra3621.t1 ID=Ggra3621.t1|Name=Ggra3621.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=764bp
MWMRDAGGRAVLTDECSQTFMACAERLTQADARREREPCVCASSRAVCKS FSLCARDAQPRALCTGNNSRRANVVCQRCLQPDPAHLAPLLTASCELPGA QPKQRAHAFSRQKALAAFDLLSCAALHRCIRTLNAGVFFVPLVLYFTPFI RFAATHALRFAMEVIRAATNAPADEGYTAQTHQGSSYAPLYTSSSLGMHP FDLEHLEAISIRRLKLLKDAEKVRSTQQLGVQRVHTALDAPKAKIRRAER THDMHIPPVGNLDRREKIRDDEASHFMVRMALCSTQRAWLLNTEYDLFTA RLDGTGAEFALNAIEKATGLVVKRVSSSELEHIRQELNAVALGPNRLRSN ENTRYYKIAFEEVPALVRHRKVFLRDGFAYVPESNILEVVAAQFRTLLSA GLAVTMNNVAVAERDDRMRPILRSIRQHFEADEQSKKAFDPNASIDRISL KELDQSLPAMPLCMHNMMVQLRQNHHLRHSARMQLGVFLKACGLTMEESL KFWKAEFGKGSITSDKFEKQYAYNIRHQYGKEGKRRNLPAFNCLKIINGR PGPGEHNGCPYREFEESRLRTSLRALGTAPDAIPVIVARAKEGNYQAACG MCFASSQPGHHPVSEYGLPEFIPDHPNSYFIEARRRRFGPPPETPSIDDE VDDEDLLMASEAVEAEHCVSKNELQANKGDNNAIGGPEDDQEAKHELQNK KGDTNDPDTKRVESVSNEKTGVSIAVDENQAKDPMEIVLPEEKLGAGSKP VEKPEGESKESEE* back to topmRNA from alignment at tig00000850_pilon:329950..332241+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra3621.t1 ID=Ggra3621.t1|Name=Ggra3621.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2292bp|location=Sequence derived from alignment at tig00000850_pilon:329950..332241+ (Gracilaria gracilis GNS1m male) ATGTGGATGCGCGACGCGGGAGGCAGAGCAGTGCTCACAGACGAGTGCAG
TCAAACATTCATGGCGTGCGCTGAAAGGCTAACACAGGCGGACGCGAGAC
GCGAGCGCGAGCCGTGTGTGTGTGCGTCATCGCGGGCGGTGTGCAAGTCG
TTCAGCTTATGCGCCCGTGACGCGCAACCGCGCGCCCTGTGCACGGGCAA
CAATTCACGGCGTGCAAACGTTGTGTGTCAGCGCTGCTTACAGCCAGATC
CGGCGCACCTCGCGCCCCTCCTCACCGCGTCGTGTGAGCTTCCGGGCGCG
CAACCGAAACAGCGGGCGCACGCCTTTTCCCGCCAAAAAGCACTCGCCGC
CTTCGATCTTCTGTCTTGCGCCGCGTTGCATCGATGCATTCGCACACTCA
ATGCCGGCGTCTTCTTCGTGCCGCTCGTGCTTTACTTCACGCCCTTCATT
CGCTTCGCTGCCACTCACGCGTTACGCTTCGCCATGGAGGTTATTCGCGC
CGCCACAAACGCTCCCGCGGACGAAGGGTACACAGCGCAGACGCATCAGG
GCTCGTCTTACGCGCCGTTGTACACCTCCTCTTCGCTGGGCATGCATCCA
TTCGACCTGGAGCACCTGGAAGCCATTTCCATCAGGAGGCTCAAGTTACT
CAAGGATGCTGAGAAGGTTCGCTCTACGCAACAGCTGGGTGTGCAGCGCG
TCCACACTGCGCTCGACGCTCCGAAGGCCAAGATTCGTCGCGCTGAACGC
ACACATGACATGCATATCCCGCCCGTGGGCAATCTCGACAGACGTGAAAA
GATTCGCGATGATGAGGCTTCTCACTTTATGGTTAGAATGGCTCTTTGTT
CTACCCAGCGCGCGTGGTTGCTCAACACCGAGTATGATCTTTTCACAGCC
CGGCTGGACGGTACCGGTGCCGAATTTGCTCTCAACGCCATCGAAAAAGC
CACCGGACTGGTTGTGAAGCGCGTGTCCAGCAGCGAACTCGAGCACATTC
GTCAGGAGCTCAATGCTGTTGCTCTGGGCCCTAATAGATTAAGAAGCAAT
GAAAACACCCGCTACTACAAGATTGCTTTCGAAGAGGTACCGGCGCTGGT
GCGGCACAGAAAGGTTTTCTTGCGCGATGGTTTTGCATATGTACCAGAAA
GCAACATCCTAGAAGTTGTGGCTGCTCAGTTTCGCACTTTGCTCAGCGCC
GGTTTAGCCGTTACCATGAACAACGTGGCCGTCGCGGAGAGAGACGACAG
AATGAGACCCATTCTCAGATCTATTCGGCAGCATTTCGAAGCTGACGAAC
AATCCAAGAAGGCCTTTGATCCGAATGCATCTATTGACCGCATATCGCTC
AAAGAGCTAGACCAATCGCTTCCGGCTATGCCATTGTGCATGCACAACAT
GATGGTGCAATTACGACAAAATCATCATCTTCGTCATTCCGCCAGAATGC
AACTTGGAGTGTTTCTAAAAGCTTGCGGGTTAACTATGGAAGAGTCTCTC
AAGTTTTGGAAAGCAGAGTTTGGCAAGGGAAGCATAACGTCCGACAAGTT
CGAAAAGCAGTATGCGTATAATATTCGCCATCAGTACGGGAAAGAAGGTA
AACGTCGAAACCTTCCGGCGTTCAACTGTCTGAAAATAATCAATGGCAGA
CCAGGCCCCGGAGAACATAACGGATGCCCATATCGAGAGTTTGAGGAATC
CCGCTTGAGAACGTCCCTCAGGGCACTAGGAACTGCCCCTGACGCAATTC
CAGTGATTGTGGCCAGGGCGAAGGAGGGCAACTACCAAGCGGCCTGTGGA
ATGTGTTTTGCATCGTCTCAACCGGGTCATCACCCAGTCAGCGAATACGG
TCTTCCCGAATTCATCCCGGACCATCCTAATTCATACTTCATCGAAGCTA
GGAGGAGACGTTTCGGGCCCCCGCCAGAAACCCCCTCGATAGACGATGAG
GTGGATGATGAGGACTTGCTGATGGCATCTGAGGCGGTTGAAGCGGAGCA
TTGCGTATCAAAGAACGAGTTGCAAGCTAACAAGGGAGATAATAATGCAA
TAGGCGGGCCTGAAGACGATCAGGAAGCGAAACACGAGCTTCAAAATAAG
AAGGGCGATACAAATGATCCGGATACCAAACGAGTAGAGTCCGTTTCAAA
CGAGAAGACTGGGGTCTCCATAGCAGTAGATGAGAACCAAGCGAAAGATC
CGATGGAAATCGTTCTTCCAGAGGAAAAGCTAGGCGCAGGTAGCAAGCCA
GTAGAGAAACCAGAGGGCGAATCAAAAGAATCCGAAGAGTAA back to topCoding sequence (CDS) from alignment at tig00000850_pilon:329950..332241+ >Ggra3621.t1 ID=Ggra3621.t1|Name=Ggra3621.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2292bp|location=Sequence derived from alignment at tig00000850_pilon:329950..332241+ (Gracilaria gracilis GNS1m male) ATGTGGATGCGCGACGCGGGAGGCAGAGCAGTGCTCACAGACGAGTGCAG TCAAACATTCATGGCGTGCGCTGAAAGGCTAACACAGGCGGACGCGAGAC GCGAGCGCGAGCCGTGTGTGTGTGCGTCATCGCGGGCGGTGTGCAAGTCG TTCAGCTTATGCGCCCGTGACGCGCAACCGCGCGCCCTGTGCACGGGCAA CAATTCACGGCGTGCAAACGTTGTGTGTCAGCGCTGCTTACAGCCAGATC CGGCGCACCTCGCGCCCCTCCTCACCGCGTCGTGTGAGCTTCCGGGCGCG CAACCGAAACAGCGGGCGCACGCCTTTTCCCGCCAAAAAGCACTCGCCGC CTTCGATCTTCTGTCTTGCGCCGCGTTGCATCGATGCATTCGCACACTCA ATGCCGGCGTCTTCTTCGTGCCGCTCGTGCTTTACTTCACGCCCTTCATT CGCTTCGCTGCCACTCACGCGTTACGCTTCGCCATGGAGGTTATTCGCGC CGCCACAAACGCTCCCGCGGACGAAGGGTACACAGCGCAGACGCATCAGG GCTCGTCTTACGCGCCGTTGTACACCTCCTCTTCGCTGGGCATGCATCCA TTCGACCTGGAGCACCTGGAAGCCATTTCCATCAGGAGGCTCAAGTTACT CAAGGATGCTGAGAAGGTTCGCTCTACGCAACAGCTGGGTGTGCAGCGCG TCCACACTGCGCTCGACGCTCCGAAGGCCAAGATTCGTCGCGCTGAACGC ACACATGACATGCATATCCCGCCCGTGGGCAATCTCGACAGACGTGAAAA GATTCGCGATGATGAGGCTTCTCACTTTATGGTTAGAATGGCTCTTTGTT CTACCCAGCGCGCGTGGTTGCTCAACACCGAGTATGATCTTTTCACAGCC CGGCTGGACGGTACCGGTGCCGAATTTGCTCTCAACGCCATCGAAAAAGC CACCGGACTGGTTGTGAAGCGCGTGTCCAGCAGCGAACTCGAGCACATTC GTCAGGAGCTCAATGCTGTTGCTCTGGGCCCTAATAGATTAAGAAGCAAT GAAAACACCCGCTACTACAAGATTGCTTTCGAAGAGGTACCGGCGCTGGT GCGGCACAGAAAGGTTTTCTTGCGCGATGGTTTTGCATATGTACCAGAAA GCAACATCCTAGAAGTTGTGGCTGCTCAGTTTCGCACTTTGCTCAGCGCC GGTTTAGCCGTTACCATGAACAACGTGGCCGTCGCGGAGAGAGACGACAG AATGAGACCCATTCTCAGATCTATTCGGCAGCATTTCGAAGCTGACGAAC AATCCAAGAAGGCCTTTGATCCGAATGCATCTATTGACCGCATATCGCTC AAAGAGCTAGACCAATCGCTTCCGGCTATGCCATTGTGCATGCACAACAT GATGGTGCAATTACGACAAAATCATCATCTTCGTCATTCCGCCAGAATGC AACTTGGAGTGTTTCTAAAAGCTTGCGGGTTAACTATGGAAGAGTCTCTC AAGTTTTGGAAAGCAGAGTTTGGCAAGGGAAGCATAACGTCCGACAAGTT CGAAAAGCAGTATGCGTATAATATTCGCCATCAGTACGGGAAAGAAGGTA AACGTCGAAACCTTCCGGCGTTCAACTGTCTGAAAATAATCAATGGCAGA CCAGGCCCCGGAGAACATAACGGATGCCCATATCGAGAGTTTGAGGAATC CCGCTTGAGAACGTCCCTCAGGGCACTAGGAACTGCCCCTGACGCAATTC CAGTGATTGTGGCCAGGGCGAAGGAGGGCAACTACCAAGCGGCCTGTGGA ATGTGTTTTGCATCGTCTCAACCGGGTCATCACCCAGTCAGCGAATACGG TCTTCCCGAATTCATCCCGGACCATCCTAATTCATACTTCATCGAAGCTA GGAGGAGACGTTTCGGGCCCCCGCCAGAAACCCCCTCGATAGACGATGAG GTGGATGATGAGGACTTGCTGATGGCATCTGAGGCGGTTGAAGCGGAGCA TTGCGTATCAAAGAACGAGTTGCAAGCTAACAAGGGAGATAATAATGCAA TAGGCGGGCCTGAAGACGATCAGGAAGCGAAACACGAGCTTCAAAATAAG AAGGGCGATACAAATGATCCGGATACCAAACGAGTAGAGTCCGTTTCAAA CGAGAAGACTGGGGTCTCCATAGCAGTAGATGAGAACCAAGCGAAAGATC CGATGGAAATCGTTCTTCCAGAGGAAAAGCTAGGCGCAGGTAGCAAGCCA GTAGAGAAACCAGAGGGCGAATCAAAAGAATCCGAAGAGTAA back to top
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